F305162

General Info

Members Datasets Scaffolds Average Seq Length
198 153 396 655

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2767802442|2770197985
Length 683
Sequence PFGFCLTGFQKRHLLIPRKTVTMTNSEKSNQMANAIRFLSAEAVEKANSGHPGLPMGAADIATVLFTRFLKFDPKAPHWPDRDRFVLSAGHGSMLLYSLLYLTGYEDMTIEEIKNFRQLGSRTAGHPEYGHASGIETTTGPLGQGLANSVGMALSERIMNAHFGDDLVNHYTYVIAGDGCLMEGISQEAIALAGHLKLNKLIVFWDDNHISIDGPVSLSDNTDQCARVEASGWNSQRVDGHDQDAIAAAIETAHKSDKPTLIACKTTIGFGAPTKAGTNKVHGSPLGAEELAGARKALGWTSEPFVVPADILDAWRSAGQRSAGDHAAWTQRLEAKDINTRSEFVRRIRGDLPGNFEEAIIAYKKKLSEDKPKVATRKASEMALEVINGVLAETIGGSADLTGSNNTKTSQTQNITPEDYGQRYVHYGIREHGMAAAMNGMALHGGLIPYSGTFLTFSDYARGAMRLTSLMGIRVIYVMTHDSIGLGEDGPTHQPVEHLAALRAIPNNYVFRPADVVETAECWELALKSRKTPSTIALTRQNLPTVRAEHTDENKCAYGAYELAAASGKAEVTIFATGSEVEIALNARTQLEANGHPASVVSVPCFELFEQQSEEYKRALIGDAPVKVAVEAAIRLGWDRFIGLDGIFIGMTGFGASGPIEALYKHFGITADAIVAAAEGKLK

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
3 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
4 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
5 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
6 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
7 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
8 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
9 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
18 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
21 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
22 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
32 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
33 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
34 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
35 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
38 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
39 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
40 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
41 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
42 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
43 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
44 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
45 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
46 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
47 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
48 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
49 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
50 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
51 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
52 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
53 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
55 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
56 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
57 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
58 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
59 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
60 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
61 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
64 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
65 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
66 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
67 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
68 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
69 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
70 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
71 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
72 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
73 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
74 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
77 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
78 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
79 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
80 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
81 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
82 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
83 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
84 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
85 2510065059 Mesorhizobium ciceri WSM4083 Isolate Nodule
86 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
87 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
88 2534681786 Brucella suis 92/29 Isolate Unclassified
89 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
90 2551306087 Sinorhizobium meliloti A0643DD Isolate Nodule
91 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
92 2643221564 Mesorhizobium sp. Root157 Isolate Unclassified
93 2643221629 Devosia sp. Root105 Isolate Unclassified
94 2643221662 Devosia sp. Root413D1 Isolate Unclassified
95 2693429783 Mesorhizobium sp. LCM 4577 Isolate Rhizosphere
96 2751185800 Brucella pituitosa AA2 Isolate Unclassified
97 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
98 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
99 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
100 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
101 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
102 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
103 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
104 2841734538 Mesorhizobium sp. M6A.T.Cr.TU.016.01.1.1 Isolate Nodule
105 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
106 2844009547 Mesorhizobium sp. M7A.F.Ce.TU.012.03.2.1 Isolate Nodule
107 2854911287 Brucella lupini LUP21 Isolate Unclassified
108 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule
109 2856349417 Mesorhizobium sp. M4A.F.Ca.ET.090.04.2.1 Isolate Nodule
110 2869162929 Mesorhizobium sanjuanii BSA136 Isolate Nodule
111 2869256925 Mesorhizobium sp. M7A.F.Ca.MR.176.00.0.0 Isolate Nodule
112 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
113 2871474448 Mesorhizobium sp. M6A.T.Cr.TU.017.01.1.1 Isolate Nodule
114 2874123672 Mesorhizobium sp. M00.F.Ca.ET.216.01.1.1 Isolate Nodule
115 2878753008 Mesorhizobium sp. M4B.F.Ca.ET.150.01.1.1 Isolate Nodule
116 2881155292 Mesorhizobium sp. M4B.F.Ca.ET.058.02.1.1 Isolate Nodule
117 2881845957 Mesorhizobium sp. M4B.F.Ca.ET.019.03.1.1 Isolate Nodule
118 2881853255 Mesorhizobium sp. M4A.F.Ca.ET.020.02.1.1 Isolate Nodule
119 2881861095 Mesorhizobium sp. M4B.F.Ca.ET.049.02.1.2 Isolate Nodule
120 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
121 2882912400 Mesorhizobium sp. M4B.F.Ca.ET.013.02.1.1 Isolate Nodule
122 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
123 2885312484 Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 Isolate Nodule
124 2885318864 Mesorhizobium sp. M4B.F.Ca.ET.017.02.2.1 Isolate Nodule
125 2885342637 Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 Isolate Nodule
126 2885350715 Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 Isolate Nodule
127 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
128 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
129 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
130 2906386501 Mesorhizobium sp. M7A.F.Ca.CA.003.01.2.1 Isolate Nodule
131 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
132 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
133 2924784321 Mesorhizobium sp. M4B.F.Ca.ET.143.01.1.1 Isolate Nodule
134 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
135 2937836603 Mesorhizobium sp. M6A.T.Cr.TU.014.01.1.1 Isolate Nodule
136 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
137 2958071322 Mesorhizobium sp. M6A.T.Ce.TU.016.01.1.1 Isolate Nodule
138 2958137437 Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 Isolate Nodule
139 2961127735 Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 Isolate Nodule
140 2965102966 Mesorhizobium sp. M7A.F.Ca.AU.002.02.1.1 Isolate Nodule
141 2967996073 Mesorhizobium sp. M4B.F.Ca.ET.169.01.1.1 Isolate Nodule
142 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
143 2970524798 Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 Isolate Nodule
144 2977821940 Mesorhizobium sp. M4B.F.Ca.ET.214.01.1.1 Isolate Nodule
145 2977828996 Mesorhizobium sp. M4B.F.Ca.ET.089.01.1.1 Isolate Nodule
146 2977942078 Mesorhizobium sp. M2E.F.Ca.ET.209.01.1.1 Isolate Nodule
147 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
148 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
149 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule
150 8004374579 Mesorhizobium sp. M4B.F.Ca.ET.211.01.1.1 Isolate Nodule
151 8004633249 Mesorhizobium sp. M6A.T.Ce.TU.002.03.1.1 Isolate Nodule
152 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified
153 8055617313 Mesorhizobium onobrychidis OM4 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 64.65
Metatranscriptomes 0
Isolates 35.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.03
Nodule 21.72
Rhizoplane 1.01
Rhizosphere 64.65
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10027644 3300003320 Bacteria 18360
2 Ga0070668_100048648 3300005347 Bacteria 3261
3 Ga0070695_100004994 3300005545 Bacteria 7822
4 Ga0068855_100053637 3300005563 Bacteria 4742
5 Ga0068856_100046119 3300005614 Bacteria 4293
6 Ga0068852_100032061 3300005616 Bacteria 4346
7 Ga0068852_100065355 3300005616 Bacteria 3173
8 Ga0068861_100015618 3300005719 Bacteria 5356
9 Ga0068851_10000505 3300005834 Bacteria 17041
10 Ga0068858_100101302 3300005842 Bacteria 2686
11 Ga0081455_10000196 3300005937 Bacteria 76949
12 Ga0075365_10015198 3300006038 Bacteria 4650
13 Ga0075367_10020060 3300006178 Bacteria 3718
14 Ga0075428_100010140 3300006844 Bacteria 10467
15 Ga0075431_100004683 3300006847 Bacteria 13436
16 Ga0111539_10021804 3300009094 Bacteria 7876
17 Ga0105238_10056181 3300009551 Bacteria 3950
18 Ga0157371_10049042 3300013102 Bacteria 3000
19 Ga0157370_10090376 3300013104 Bacteria 2875
20 Ga0157369_10035043 3300013105 Bacteria 5504
21 Ga0157369_10072310 3300013105 Bacteria 3701
22 Ga0213872_10001604 3300021361 Bacteria 14345
23 Ga0213872_10012561 3300021361 Bacteria 3983
24 Ga0213876_10000463 3300021384 Bacteria 32527
25 Ga0207657_10051848 3300025919 Bacteria 3565
26 Ga0207694_10009867 3300025924 Bacteria 7206
27 Ga0207669_10007537 3300025937 Bacteria 5041
28 Ga0207667_10003549 3300025949 Bacteria 19289
29 Ga0207667_10006111 3300025949 Bacteria 14633
30 Ga0207667_10156514 3300025949 Bacteria 2344
31 Ga0207639_10001554 3300026041 Bacteria 15394
32 Ga0207678_10081378 3300026067 Bacteria 2772
33 Ga0207675_100057388 3300026118 Bacteria 3632
34 Ga0207698_10017306 3300026142 Bacteria 4887
35 Ga0268266_10032639 3300028379 Bacteria 4424
36 Ga0265318_10000018 3300028577 Bacteria 173038
37 Ga0265338_10079262 3300028800 Bacteria 2765
38 Ga0265325_10004355 3300031241 Bacteria 8962
39 Ga0265339_10006286 3300031249 Bacteria 7806
40 Ga0265339_10043243 3300031249 Bacteria 2491
41 Ga0265331_10003239 3300031250 Bacteria 10608
42 Ga0265327_10004868 3300031251 Bacteria 11609
43 Ga0265313_10001390 3300031595 Bacteria 22705
44 Ga0373932_0007725 3300035112 Bacteria 2566
45 Ga0373939_0004998 3300035114 Bacteria 3152
46 Ga0373931_0000325 3300035691 Bacteria 20047
47 Ga0373931_0007456 3300035691 Bacteria 5153
48 Ga0395899_0000288 3300037312 Bacteria 64881
49 Ga0395899_0023548 3300037312 Bacteria 4662
50 Ga0395899_0024744 3300037312 Bacteria 4537
51 Ga0395900_0000246 3300037418 Bacteria 85104
52 Ga0395898_0000447 3300037466 Bacteria 85103
53 Ga0395905_0000228 3300037471 Bacteria 85103
54 Ga0395901_0000167 3300038443 Bacteria 85844
55 Ga0436365_0173869 3300039437 Bacteria 89108
56 Ga0436361_0207399 3300039447 Bacteria 2270
57 Ga0436361_0453677 3300039447 Bacteria 28726
58 Ga0436361_1001866 3300039447 Bacteria 37490
59 Ga0436362_1104355 3300039453 Bacteria 6184
60 Ga0451577_0018734 3300042876 Bacteria 6370
61 Ga0501031_0000141 3300049568 Bacteria 40452
62 Ga0501031_0010503 3300049568 Bacteria 6030
63 Ga0501031_0048472 3300049568 Bacteria 2768
64 Ga0501032_0000301 3300049569 Bacteria 41571
65 Ga0501033_0011287 3300049570 Bacteria 6839
66 Ga0501034_0000675 3300049571 Bacteria 51860
67 Ga0501034_0000715 3300049571 Bacteria 50444
68 Ga0501034_0011671 3300049571 Bacteria 9092
69 Ga0501034_0024402 3300049571 Bacteria 6151
70 Ga0501034_0028779 3300049571 Bacteria 5653
71 Ga0501034_0064928 3300049571 Bacteria 3663
72 Ga0501034_0075875 3300049571 Bacteria 3368
73 Ga0501036_0000043 3300049572 Bacteria 79310
74 Ga0501036_0090387 3300049572 Bacteria 2586
75 Ga0501037_0000263 3300049573 Bacteria 45324
76 Ga0501037_0034396 3300049573 Bacteria 3739
77 Ga0501038_0000131 3300049574 Bacteria 63880
78 Ga0501038_0020011 3300049574 Bacteria 6024
79 Ga0501039_0000106 3300049575 Bacteria 56453
80 Ga0501039_0011532 3300049575 Bacteria 6727
81 Ga0501039_0052858 3300049575 Bacteria 3142
82 Ga0501042_0042227 3300049578 Bacteria 3245
83 Ga0501042_0081827 3300049578 Bacteria 2314
84 Ga0501043_0000074 3300049579 Bacteria 87396
85 Ga0501043_0035799 3300049579 Bacteria 3905
86 Ga0501043_0039461 3300049579 Bacteria 3710
87 Ga0501046_0000074 3300049580 Bacteria 104319
88 Ga0501047_0000301 3300049581 Bacteria 56886
89 Ga0501047_0033766 3300049581 Bacteria 4938
90 Ga0501048_0000738 3300049582 Bacteria 23971
91 Ga0501048_0076803 3300049582 Bacteria 2357
92 Ga0501067_0000669 3300049583 Bacteria 18444
93 Ga0501069_0001738 3300049585 Bacteria 10869
94 Ga0501070_0021638 3300049586 Bacteria 5393
95 Ga0501070_0029525 3300049586 Bacteria 4596
96 Ga0501070_0038773 3300049586 Bacteria 3975
97 Ga0501070_0051994 3300049586 Bacteria 3400
98 Ga0501071_0020115 3300049587 Bacteria 4638
99 Ga0501071_0068669 3300049587 Bacteria 2579
100 Ga0501071_0076807 3300049587 Bacteria 2439
101 Ga0501072_0037033 3300049588 Bacteria 3826
102 Ga0501073_0001905 3300049589 Bacteria 15550
103 Ga0501073_0034640 3300049589 Bacteria 3592
104 Ga0501074_0061167 3300049590 Bacteria 2713
105 Ga0501076_0088603 3300049592 Bacteria 2487
106 Ga0501079_0011966 3300049741 Bacteria 6622
107 Ga0501080_0001211 3300049742 Bacteria 21422
108 Ga0501080_0073019 3300049742 Bacteria 3192
109 Ga0501080_0089636 3300049742 Bacteria 2857
110 Ga0501080_0109148 3300049742 Bacteria 2564
111 Ga0501083_0001289 3300049744 Bacteria 16957
112 Ga0501083_0020978 3300049744 Bacteria 4541
113 Ga0501083_0031192 3300049744 Bacteria 3658
114 Ga0501035_0009395 3300049822 Bacteria 9091
115 Ga0501044_0000667 3300049823 Bacteria 41447
116 Ga0501044_0017492 3300049823 Bacteria 7695
117 Ga0501044_0089975 3300049823 Bacteria 3097
118 Ga0501044_0136038 3300049823 Bacteria 2448
119 Ga0501045_0020082 3300049824 Bacteria 4769
120 Ga0501045_0027102 3300049824 Bacteria 4126
121 Ga0501045_0091389 3300049824 Bacteria 2250
122 nmdc:mga0yw44_16605_c1 3300050492 Bacteria 3982
123 nmdc:mga07m45_31551_c2 3300050496 Bacteria 2360
124 nmdc:mga0qj67_63274_c1 3300050509 Bacteria 2942
125 nmdc:mga0a205_88136_c1 3300050515 Bacteria 2999
126 Ga0500595_001104 3300053119 Bacteria 14966
127 Ga0500616_0013027 3300053153 Bacteria 4844
128 Ga0501084_0016960 3300054114 Bacteria 6053
129 2770197985 2767802442 Bacteria 5747986
130 2510317945 2510065059 Bacteria 6847884
131 2511392489 2511231027 Bacteria 5013807
132 2514587004 2513237351 Bacteria 6968952
133 2535485798 2534681786 Bacteria 3308809
134 2551693865 2551306086 Bacteria 6843938
135 2551698545 2551306087 Bacteria 7351905
136 2551711404 2551306089 Bacteria 7162724
137 2643837039 2643221564 Bacteria 4193379
138 2644168175 2643221629 Bacteria 5850260
139 2644348869 2643221662 Bacteria 5851492
140 2694634114 2693429783 Bacteria 7019804
141 2753360187 2751185800 Bacteria 5467370
142 2757570481 2757320392 Bacteria 3737298
143 2758642510 2758568016 Bacteria 5645291
144 2765467461 2765235802 Bacteria 5618596
145 2776269817 2775506902 Bacteria 6208009
146 2776280932 2775506904 Bacteria 5954060
147 2839993132 2839993093 Bacteria 5512535
148 2840766137 2840764183 Bacteria 6358399
149 2841737139 2841734538 Bacteria 6784580
150 2842874857 2842871566 Bacteria 4827117
151 2844011962 2844009547 Bacteria 6728125
152 2854912990 2854911287 Bacteria 5582813
153 2856349056 2856342000 Bacteria 7176905
154 2856352975 2856349417 Bacteria 6230045
155 2869163660 2869162929 Bacteria 6399702
156 2869263251 2869256925 Bacteria 6981691
157 2871453407 2871451962 Bacteria 7336357
158 2871478595 2871474448 Bacteria 6806570
159 2874128665 2874123672 Bacteria 7238285
160 2878754653 2878753008 Bacteria 6922523
161 2881160493 2881155292 Bacteria 6461656
162 2881850012 2881845957 Bacteria 6611900
163 2881856418 2881853255 Bacteria 6698367
164 2881861929 2881861095 Bacteria 7128710
165 2882638247 2882632389 Bacteria 8154593
166 2882915011 2882912400 Bacteria 6801539
167 2884298927 2884298095 Bacteria 3823049
168 2885313399 2885312484 Bacteria 6415165
169 2885321392 2885318864 Bacteria 6729568
170 2885344563 2885342637 Bacteria 7011821
171 2885351519 2885350715 Bacteria 6787678
172 2894653972 2894652903 Bacteria 4587256
173 2903495866 2903492973 Bacteria 13473544
174 2904580215 2904578770 Bacteria 5302906
175 2906392712 2906386501 Bacteria 5977019
176 2915654231 2915650412 Bacteria 4288180
177 2919120111 2919119836 Bacteria 5208557
178 2924790316 2924784321 Bacteria 7416538
179 2928523001 2928521798 Bacteria 4960112
180 2937837384 2937836603 Bacteria 6811263
181 2954013634 2954011201 Bacteria 4762601
182 2958073418 2958071322 Bacteria 6815895
183 2958139328 2958137437 Bacteria 6050276
184 2961134564 2961127735 Bacteria 7196641
185 2965110666 2965102966 Bacteria 6800987
186 2967996242 2967996073 Bacteria 6787468
187 2970491245 2970489779 Bacteria 6517260
188 2970526826 2970524798 Bacteria 6840927
189 2977823870 2977821940 Bacteria 6906439
190 2977831050 2977828996 Bacteria 7007971
191 2977942940 2977942078 Bacteria 7570577
192 2996315576 2996310559 Bacteria 6357320
193 3002141441 3002141150 Bacteria 5254435
194 8004318661 8004312739 Bacteria 7444653
195 8004376233 8004374579 Bacteria 6898112
196 8004635014 8004633249 Bacteria 6723080
197 8045868401 8045864390 Bacteria 5043873
198 8055618672 8055617313 Bacteria 7548464
199 rootH2_10027644
200 Ga0070668_100048648
201 Ga0070695_100004994
202 Ga0068855_100053637
203 Ga0068856_100046119
204 Ga0068852_100032061
205 Ga0068852_100065355
206 Ga0068861_100015618
207 Ga0068851_10000505
208 Ga0068858_100101302
209 Ga0081455_10000196
210 Ga0075365_10015198
211 Ga0075367_10020060
212 Ga0075428_100010140
213 Ga0075431_100004683
214 Ga0111539_10021804
215 Ga0105238_10056181
216 Ga0157371_10049042
217 Ga0157370_10090376
218 Ga0157369_10035043
219 Ga0157369_10072310
220 Ga0213872_10001604
221 Ga0213872_10012561
222 Ga0213876_10000463
223 Ga0207657_10051848
224 Ga0207694_10009867
225 Ga0207669_10007537
226 Ga0207667_10003549
227 Ga0207667_10006111
228 Ga0207667_10156514
229 Ga0207639_10001554
230 Ga0207678_10081378
231 Ga0207675_100057388
232 Ga0207698_10017306
233 Ga0268266_10032639
234 Ga0265318_10000018
235 Ga0265338_10079262
236 Ga0265325_10004355
237 Ga0265339_10006286
238 Ga0265339_10043243
239 Ga0265331_10003239
240 Ga0265327_10004868
241 Ga0265313_10001390
242 Ga0373932_0007725
243 Ga0373939_0004998
244 Ga0373931_0000325
245 Ga0373931_0007456
246 Ga0395899_0000288
247 Ga0395899_0023548
248 Ga0395899_0024744
249 Ga0395900_0000246
250 Ga0395898_0000447
251 Ga0395905_0000228
252 Ga0395901_0000167
253 Ga0436365_0173869
254 Ga0436361_0207399
255 Ga0436361_0453677
256 Ga0436361_1001866
257 Ga0436362_1104355
258 Ga0451577_0018734
259 Ga0501031_0000141
260 Ga0501031_0010503
261 Ga0501031_0048472
262 Ga0501032_0000301
263 Ga0501033_0011287
264 Ga0501034_0000675
265 Ga0501034_0000715
266 Ga0501034_0011671
267 Ga0501034_0024402
268 Ga0501034_0028779
269 Ga0501034_0064928
270 Ga0501034_0075875
271 Ga0501036_0000043
272 Ga0501036_0090387
273 Ga0501037_0000263
274 Ga0501037_0034396
275 Ga0501038_0000131
276 Ga0501038_0020011
277 Ga0501039_0000106
278 Ga0501039_0011532
279 Ga0501039_0052858
280 Ga0501042_0042227
281 Ga0501042_0081827
282 Ga0501043_0000074
283 Ga0501043_0035799
284 Ga0501043_0039461
285 Ga0501046_0000074
286 Ga0501047_0000301
287 Ga0501047_0033766
288 Ga0501048_0000738
289 Ga0501048_0076803
290 Ga0501067_0000669
291 Ga0501069_0001738
292 Ga0501070_0021638
293 Ga0501070_0029525
294 Ga0501070_0038773
295 Ga0501070_0051994
296 Ga0501071_0020115
297 Ga0501071_0068669
298 Ga0501071_0076807
299 Ga0501072_0037033
300 Ga0501073_0001905
301 Ga0501073_0034640
302 Ga0501074_0061167
303 Ga0501076_0088603
304 Ga0501079_0011966
305 Ga0501080_0001211
306 Ga0501080_0073019
307 Ga0501080_0089636
308 Ga0501080_0109148
309 Ga0501083_0001289
310 Ga0501083_0020978
311 Ga0501083_0031192
312 Ga0501035_0009395
313 Ga0501044_0000667
314 Ga0501044_0017492
315 Ga0501044_0089975
316 Ga0501044_0136038
317 Ga0501045_0020082
318 Ga0501045_0027102
319 Ga0501045_0091389
320 nmdc:mga0yw44_16605_c1
321 nmdc:mga07m45_31551_c2
322 nmdc:mga0qj67_63274_c1
323 nmdc:mga0a205_88136_c1
324 Ga0500595_001104
325 Ga0500616_0013027
326 Ga0501084_0016960
327 2770197985
328 2510317945
329 2511392489
330 2514587004
331 2535485798
332 2551693865
333 2551698545
334 2551711404
335 2643837039
336 2644168175
337 2644348869
338 2694634114
339 2753360187
340 2757570481
341 2758642510
342 2765467461
343 2776269817
344 2776280932
345 2839993132
346 2840766137
347 2841737139
348 2842874857
349 2844011962
350 2854912990
351 2856349056
352 2856352975
353 2869163660
354 2869263251
355 2871453407
356 2871478595
357 2874128665
358 2878754653
359 2881160493
360 2881850012
361 2881856418
362 2881861929
363 2882638247
364 2882915011
365 2884298927
366 2885313399
367 2885321392
368 2885344563
369 2885351519
370 2894653972
371 2903495866
372 2904580215
373 2906392712
374 2915654231
375 2919120111
376 2924790316
377 2928523001
378 2937837384
379 2954013634
380 2958073418
381 2958139328
382 2961134564
383 2965110666
384 2967996242
385 2970491245
386 2970526826
387 2977823870
388 2977831050
389 2977942940
390 2996315576
391 3002141441
392 8004318661
393 8004376233
394 8004635014
395 8045868401
396 8055618672

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22613

Transketolase_C_1

Transketolase-like TK C-terminal domain

559

670

0.99

PF00456

Transketolase_N

Transketolase, thiamine diphosphate binding domain

28

353

0.98

PF02779

Transket_pyr

Transketolase, pyrimidine binding domain

372

546

0.98

PF02780

Transketolase_C

Transketolase, C-terminal domain

563

674

0.94

PF00676

E1_dh

Dehydrogenase E1 component

98

267

0.78

PF13292

DXP_synthase_N

1-deoxy-D-xylulose-5-phosphate synthase

16

230

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
2r8p-assembly1.cif.gz_A transketolase from e. coli in complex with substrate d-fructose-6-phosphate 0.9675 20 672
3l84-assembly1.cif.gz_A high resolution crystal structure of transketolase from campylobacter jejuni subsp. jejuni nctc 11168 0.966 22 669
1qgd-assembly1.cif.gz_B transketolase from escherichia coli 0.9639 20 672
5hht-assembly1.cif.gz_B crystal structure of e. coli transketolase triple variant ser385tyr/asp469thr/arg520gln 0.9635 20 672
3uk1-assembly1.cif.gz_B crystal structure of a transketolase from burkholderia thailandensis with an oxidized cysteinesulfonic acid in the active site 0.9542 20 672
ID Description Score Start End Superfamily
af_A0A1D6P5P4_1_115_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9706 175 285 3.40.50.970
3m7iA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9673 22 333 3.40.50.970
af_C6KSV3_9_337_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9662 23 328 3.40.50.970
2e6kA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.963 363 539 3.40.50.970
5hjeA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.962 22 328 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A7S0YJV0-F1-model_v4 Transketolase N-terminal domain-containing protein 0.9887 165 303 GO:0004802
GO:0005829
GO:0006098
AF-A0A383B260-F1-model_v4 Transketolase N-terminal domain-containing protein 0.9868 62 309 GO:0004802
GO:0005829
GO:0006098
AF-A0A4V1SJD7-F1-model_v4 Transketolase (EC 2.2.1.1) 0.9843 26 262 GO:0004802
GO:0005829
GO:0006098
GO:0046872
AF-A0A0C1UZT8-F1-model_v4 deleted 0.9843 26 235
AF-A0A3B9FG77-F1-model_v4 Transketolase (EC 2.2.1.1) 0.9833 18 313 GO:0004802
GO:0005829
GO:0006098
GO:0046872

Map