F302117

General Info

Members Datasets Scaffolds Average Seq Length
196 130 392 198

Family's Representative Sequence

Representative Sequence 3300048929|Ga0496126_0092383|Ga0496126_0092383_393_1085
Length 230
Sequence MFGRVWQSGRGAQLERVGSRDEEARVIASVHGTVQKVRLDAAVIEVNGVGMLVQATPATLAGLRVGVSATLHTSLVVREDSLTLFGFAEDDEREVFEVVQTVSGVGPRLAMAMLAVHTPDGLRRAVVDEDLKALERVPGIGRKGAQRLVLELKDRIGAPAPVSVGGVQPVLVAGDRRDQVVEALVGLGWSAKIADDAVTTVLDGVEGPVGADEVAGVLRAALRTLGGGRG

Samples

Sample ID Description Type Environment
1 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
5 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
6 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
7 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
10 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
11 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
12 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
13 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
14 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
15 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
16 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
17 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
18 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
19 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
20 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
26 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
27 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
28 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
29 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
30 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
31 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
32 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
33 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
34 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
35 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
36 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
37 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
38 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
39 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
40 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
41 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
42 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
43 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
44 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
45 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
46 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
47 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
48 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
49 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
50 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
51 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
52 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
53 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
54 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
55 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
58 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
59 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
60 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
61 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
62 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
63 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
64 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
65 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
66 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
67 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
68 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
69 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
70 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
71 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
72 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
73 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
74 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
75 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
76 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
77 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
78 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
82 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
83 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
84 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
85 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
86 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
87 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
98 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
99 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
100 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
103 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
107 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
108 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
109 2558860280 Kutzneria sp. 744 Isolate Unclassified
110 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
111 2643221679 Angustibacter sp. Root456 Isolate Unclassified
112 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
113 2643221694 Cellulomonas sp. Root137 Isolate Unclassified
114 2643221711 Terrabacter sp. Root85 Isolate Unclassified
115 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
116 2728369276 Kineococcus rhizosphaerae DSM 19711 Isolate Rhizosphere
117 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
118 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
119 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
120 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
121 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
122 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
123 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
124 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
125 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
126 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
127 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
128 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
129 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
130 8057568493 Actinorhabdospora filicis NBRC 111898 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.78
Metatranscriptomes 0
Isolates 11.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 18.88
Rhizosphere 62.76
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496126_0092383 3300048929 Bacteria 2659
2 rootH1_10249490 3300003323 Bacteria 1391
3 Ga0070683_100476260 3300005329 Bacteria 1192
4 Ga0070684_100503329 3300005535 Bacteria 1122
5 Ga0068853_100168457 3300005539 Bacteria 1981
6 Ga0070696_100000369 3300005546 Bacteria 27465
7 Ga0068852_100207232 3300005616 Bacteria 1858
8 Ga0068852_100583519 3300005616 Bacteria 1121
9 Ga0081455_10008506 3300005937 Bacteria 10661
10 Ga0105243_10205850 3300009148 Bacteria 1729
11 Ga0105238_10074201 3300009551 Bacteria 3395
12 Ga0105238_11314226 3300009551 Bacteria 749
13 Ga0157369_10122155 3300013105 Bacteria 2762
14 Ga0163162_10630593 3300013306 Bacteria 1196
15 Ga0157372_10084855 3300013307 Bacteria 3591
16 Ga0157375_10158525 3300013308 Bacteria 2404
17 Ga0157375_10349043 3300013308 Bacteria 1645
18 Ga0157375_10515252 3300013308 Bacteria 1360
19 Ga0163163_10305795 3300014325 Bacteria 1642
20 Ga0163163_10690404 3300014325 Bacteria 1084
21 Ga0157380_10060226 3300014326 Bacteria 3033
22 Ga0182008_10311076 3300014497 Bacteria 827
23 Ga0163161_10401819 3300017792 Bacteria 1099
24 Ga0213875_10008316 3300021388 Bacteria 5319
25 Ga0207661_10110708 3300025944 Bacteria 2322
26 Ga0207639_10010182 3300026041 Bacteria 6506
27 Ga0207678_10307140 3300026067 Bacteria 1364
28 Ga0207674_10065998 3300026116 Bacteria 3646
29 Ga0207698_10501100 3300026142 Bacteria 1182
30 Ga0207698_10924833 3300026142 Bacteria 880
31 Ga0307515_10049601 3300028794 Bacteria 6309
32 Ga0307515_10125403 3300028794 Bacteria 2873
33 Ga0307511_10001289 3300030521 Bacteria 26561
34 Ga0307408_100230823 3300031548 Bacteria 1516
35 Ga0316575_10000003 3300031665 Bacteria 134789
36 Ga0316575_10000807 3300031665 Bacteria 9486
37 Ga0316575_10084308 3300031665 Bacteria 1283
38 Ga0316579_10024273 3300031691 Bacteria 2728
39 Ga0316579_10083283 3300031691 Bacteria 1524
40 Ga0316576_10019366 3300031727 Bacteria 4662
41 Ga0316576_10070517 3300031727 Bacteria 2577
42 Ga0316576_10247809 3300031727 Bacteria 1337
43 Ga0316578_10011918 3300031728 Bacteria 4568
44 Ga0316577_10011156 3300031733 Bacteria 4863
45 Ga0307518_10000188 3300031838 Bacteria 47000
46 Ga0307407_10068204 3300031903 Bacteria 2106
47 Ga0316583_10036614 3300032133 Bacteria 1740
48 Ga0316585_10003128 3300032137 Bacteria 4518
49 Ga0316585_10031624 3300032137 Bacteria 1665
50 Ga0316580_10002506 3300032139 Bacteria 5065
51 Ga0316574_0007167 3300035398 Bacteria 6091
52 Ga0316574_0025216 3300035398 Bacteria 3567
53 Ga0316574_0166091 3300035398 Bacteria 1421
54 Ga0316574_0292414 3300035398 Bacteria 1037
55 Ga0316582_0012571 3300036647 Bacteria 4731
56 Ga0316582_0015805 3300036647 Bacteria 4327
57 Ga0316584_0003212 3300036712 Bacteria 10580
58 Ga0316584_0049144 3300036712 Bacteria 3152
59 Ga0436364_0722735 3300037853 Bacteria 11583
60 Ga0395901_0417871 3300038443 Bacteria 1376
61 Ga0395901_0882978 3300038443 Bacteria 877
62 Ga0436363_1341962 3300039450 Bacteria 1251
63 Ga0451853_3026115 3300041512 Bacteria 670
64 Ga0439433_0019948 3300041999 Bacteria 1495
65 Ga0466969_0001304 3300044656 Bacteria 13441
66 Ga0466969_0011431 3300044656 Bacteria 4700
67 Ga0466972_0037549 3300044658 Bacteria 2368
68 Ga0466965_0251551 3300044683 Bacteria 948
69 Ga0466965_0263850 3300044683 Bacteria 926
70 Ga0466966_0000471 3300044684 Bacteria 25873
71 Ga0466966_0119018 3300044684 Bacteria 1624
72 Ga0466961_0012862 3300044693 Bacteria 5353
73 Ga0466961_0234996 3300044693 Bacteria 1127
74 Ga0466963_0545358 3300044694 Bacteria 819
75 Ga0466963_0621121 3300044694 Bacteria 763
76 Ga0466971_0035739 3300044719 Bacteria 2228
77 Ga0466970_0014437 3300044765 Bacteria 4056
78 Ga0466970_0018789 3300044765 Bacteria 3581
79 Ga0466970_0108494 3300044765 Bacteria 1515
80 Ga0466957_0660285 3300044842 Bacteria 736
81 Ga0466959_0003571 3300045049 Bacteria 10234
82 Ga0466959_0568810 3300045049 Bacteria 764
83 Ga0466967_0107029 3300045976 Bacteria 2564
84 Ga0495651_0352806 3300046462 Bacteria 972
85 Ga0495608_0562823 3300046511 Bacteria 686
86 Ga0495667_0029071 3300046559 Bacteria 3720
87 Ga0495658_0023735 3300046683 Bacteria 3259
88 Ga0495658_0240889 3300046683 Bacteria 1136
89 Ga0495670_0205799 3300046691 Bacteria 1043
90 Ga0495604_0593493 3300047317 Bacteria 711
91 Ga0495676_0025378 3300047321 Bacteria 5118
92 Ga0495680_0173169 3300047322 Bacteria 1562
93 Ga0495602_0186787 3300048088 Bacteria 1593
94 Ga0496100_0007052 3300048903 Bacteria 6167
95 Ga0496100_0102440 3300048903 Bacteria 1975
96 Ga0496100_0147013 3300048903 Bacteria 1677
97 Ga0496102_0059224 3300048905 Bacteria 3502
98 Ga0496102_0240382 3300048905 Bacteria 1707
99 Ga0496103_0504239 3300048906 Bacteria 774
100 Ga0496104_0017792 3300048907 Bacteria 6481
101 Ga0496104_0219486 3300048907 Bacteria 1813
102 Ga0496104_0390818 3300048907 Bacteria 1303
103 Ga0496104_0733933 3300048907 Bacteria 895
104 Ga0496104_1076146 3300048907 Bacteria 708
105 Ga0496105_0161446 3300048908 Bacteria 1840
106 Ga0496105_0191199 3300048908 Bacteria 1673
107 Ga0496105_0383876 3300048908 Bacteria 1117
108 Ga0496106_0300155 3300048909 Bacteria 1288
109 Ga0496108_0054012 3300048911 Bacteria 3371
110 Ga0496108_0142482 3300048911 Bacteria 2065
111 Ga0496109_0039223 3300048912 Bacteria 4286
112 Ga0496109_0383933 3300048912 Bacteria 1327
113 Ga0496110_0017277 3300048913 Bacteria 6034
114 Ga0496110_0103132 3300048913 Bacteria 2558
115 Ga0496110_0234013 3300048913 Bacteria 1671
116 Ga0496110_0254140 3300048913 Bacteria 1600
117 Ga0496111_0008580 3300048914 Bacteria 6771
118 Ga0496111_0013837 3300048914 Bacteria 5502
119 Ga0496111_0130628 3300048914 Bacteria 1858
120 Ga0496111_0261418 3300048914 Bacteria 1284
121 Ga0496112_0388863 3300048915 Bacteria 1335
122 Ga0496113_0276277 3300048916 Bacteria 1343
123 Ga0496113_0341782 3300048916 Bacteria 1200
124 Ga0496113_0500629 3300048916 Bacteria 975
125 Ga0496114_0042599 3300048917 Bacteria 3763
126 Ga0496114_0092564 3300048917 Bacteria 2568
127 Ga0496114_0106625 3300048917 Bacteria 2397
128 Ga0496114_0161531 3300048917 Bacteria 1948
129 Ga0496114_0253860 3300048917 Bacteria 1547
130 Ga0496114_0528622 3300048917 Bacteria 1043
131 Ga0496117_0001642 3300048920 Bacteria 31427
132 Ga0496118_0007657 3300048921 Bacteria 11371
133 Ga0496119_0002900 3300048922 Bacteria 18300
134 Ga0496120_0058926 3300048923 Bacteria 2154
135 Ga0496122_0000240 3300048925 Bacteria 123001
136 Ga0496122_0000275 3300048925 Bacteria 114580
137 Ga0496123_0000076 3300048926 Bacteria 194050
138 Ga0496123_0000166 3300048926 Bacteria 131527
139 Ga0496124_0000205 3300048927 Bacteria 116897
140 Ga0496124_0002643 3300048927 Bacteria 23026
141 Ga0496125_0003396 3300048928 Bacteria 19363
142 Ga0496126_0019963 3300048929 Bacteria 6584
143 Ga0496126_0445757 3300048929 Bacteria 1043
144 Ga0501031_0010666 3300049568 Bacteria 5985
145 Ga0501032_0019259 3300049569 Bacteria 4775
146 Ga0501033_0132646 3300049570 Bacteria 1804
147 Ga0501034_0004950 3300049571 Bacteria 14662
148 Ga0501034_0015763 3300049571 Bacteria 7761
149 Ga0501034_0145988 3300049571 Bacteria 2343
150 Ga0501034_1014900 3300049571 Bacteria 713
151 Ga0501036_0017598 3300049572 Bacteria 5978
152 Ga0501037_0516785 3300049573 Bacteria 809
153 Ga0501038_0018578 3300049574 Bacteria 6278
154 Ga0501038_0041602 3300049574 Bacteria 4006
155 Ga0501038_0068050 3300049574 Bacteria 3028
156 Ga0501038_0106284 3300049574 Bacteria 2330
157 Ga0501041_0296287 3300049577 Bacteria 1019
158 Ga0501046_0017519 3300049580 Bacteria 5974
159 Ga0501047_0024632 3300049581 Bacteria 5776
160 Ga0501067_0004052 3300049583 Bacteria 8079
161 Ga0501069_0126978 3300049585 Bacteria 1459
162 Ga0501070_0247313 3300049586 Bacteria 1459
163 Ga0501071_0141792 3300049587 Bacteria 1790
164 Ga0501074_0041170 3300049590 Bacteria 3345
165 Ga0501080_0521128 3300049742 Bacteria 1061
166 Ga0501083_0007075 3300049744 Bacteria 7963
167 Ga0501035_0007453 3300049822 Bacteria 10220
168 Ga0501035_0201660 3300049822 Bacteria 1706
169 Ga0501044_0003438 3300049823 Bacteria 17846
170 Ga0501044_0107280 3300049823 Bacteria 2804
171 Ga0501044_0159621 3300049823 Bacteria 2232
172 Ga0501084_0052130 3300054114 Bacteria 3424
173 Ga0501082_0065320 3300060353 Bacteria 3133
174 Ga0466962_0019371 3300061719 Bacteria 3270
175 2559424682 2558860280 Bacteria 11429938
176 2586060662 2585427649 Bacteria 9053857
177 2644445285 2643221679 Bacteria 3839507
178 2644503796 2643221690 Bacteria 4654705
179 2644527134 2643221694 Bacteria 4392972
180 2644609630 2643221711 Bacteria 4865335
181 2644670137 2643221722 Bacteria 4247614
182 2729904864 2728369276 Bacteria 5610032
183 2784472081 2784132109 Bacteria 3141763
184 2809589207 2808606522 Bacteria 9488490
185 2812374864 2811994882 Bacteria 4688362
186 2819427601 2818991318 Bacteria 5266538
187 2819666459 2818991458 Bacteria 4794049
188 2819691625 2818991462 Bacteria 4320267
189 2819729595 2818991469 Bacteria 4644110
190 2861520878 2861520306 Bacteria 8348283
191 2884995579 2884994152 Bacteria 4492978
192 2915771495 2915768154 Bacteria 8424322
193 2946033792 2946033335 Bacteria 3835514
194 8055036123 8055034563 Bacteria 3562128
195 8055038364 8055037949 Bacteria 3337834
196 8057568749 8057568493 Bacteria 7221719
197 Ga0496126_0092383
198 rootH1_10249490
199 Ga0070683_100476260
200 Ga0070684_100503329
201 Ga0068853_100168457
202 Ga0070696_100000369
203 Ga0068852_100207232
204 Ga0068852_100583519
205 Ga0081455_10008506
206 Ga0105243_10205850
207 Ga0105238_10074201
208 Ga0105238_11314226
209 Ga0157369_10122155
210 Ga0163162_10630593
211 Ga0157372_10084855
212 Ga0157375_10158525
213 Ga0157375_10349043
214 Ga0157375_10515252
215 Ga0163163_10305795
216 Ga0163163_10690404
217 Ga0157380_10060226
218 Ga0182008_10311076
219 Ga0163161_10401819
220 Ga0213875_10008316
221 Ga0207661_10110708
222 Ga0207639_10010182
223 Ga0207678_10307140
224 Ga0207674_10065998
225 Ga0207698_10501100
226 Ga0207698_10924833
227 Ga0307515_10049601
228 Ga0307515_10125403
229 Ga0307511_10001289
230 Ga0307408_100230823
231 Ga0316575_10000003
232 Ga0316575_10000807
233 Ga0316575_10084308
234 Ga0316579_10024273
235 Ga0316579_10083283
236 Ga0316576_10019366
237 Ga0316576_10070517
238 Ga0316576_10247809
239 Ga0316578_10011918
240 Ga0316577_10011156
241 Ga0307518_10000188
242 Ga0307407_10068204
243 Ga0316583_10036614
244 Ga0316585_10003128
245 Ga0316585_10031624
246 Ga0316580_10002506
247 Ga0316574_0007167
248 Ga0316574_0025216
249 Ga0316574_0166091
250 Ga0316574_0292414
251 Ga0316582_0012571
252 Ga0316582_0015805
253 Ga0316584_0003212
254 Ga0316584_0049144
255 Ga0436364_0722735
256 Ga0395901_0417871
257 Ga0395901_0882978
258 Ga0436363_1341962
259 Ga0451853_3026115
260 Ga0439433_0019948
261 Ga0466969_0001304
262 Ga0466969_0011431
263 Ga0466972_0037549
264 Ga0466965_0251551
265 Ga0466965_0263850
266 Ga0466966_0000471
267 Ga0466966_0119018
268 Ga0466961_0012862
269 Ga0466961_0234996
270 Ga0466963_0545358
271 Ga0466963_0621121
272 Ga0466971_0035739
273 Ga0466970_0014437
274 Ga0466970_0018789
275 Ga0466970_0108494
276 Ga0466957_0660285
277 Ga0466959_0003571
278 Ga0466959_0568810
279 Ga0466967_0107029
280 Ga0495651_0352806
281 Ga0495608_0562823
282 Ga0495667_0029071
283 Ga0495658_0023735
284 Ga0495658_0240889
285 Ga0495670_0205799
286 Ga0495604_0593493
287 Ga0495676_0025378
288 Ga0495680_0173169
289 Ga0495602_0186787
290 Ga0496100_0007052
291 Ga0496100_0102440
292 Ga0496100_0147013
293 Ga0496102_0059224
294 Ga0496102_0240382
295 Ga0496103_0504239
296 Ga0496104_0017792
297 Ga0496104_0219486
298 Ga0496104_0390818
299 Ga0496104_0733933
300 Ga0496104_1076146
301 Ga0496105_0161446
302 Ga0496105_0191199
303 Ga0496105_0383876
304 Ga0496106_0300155
305 Ga0496108_0054012
306 Ga0496108_0142482
307 Ga0496109_0039223
308 Ga0496109_0383933
309 Ga0496110_0017277
310 Ga0496110_0103132
311 Ga0496110_0234013
312 Ga0496110_0254140
313 Ga0496111_0008580
314 Ga0496111_0013837
315 Ga0496111_0130628
316 Ga0496111_0261418
317 Ga0496112_0388863
318 Ga0496113_0276277
319 Ga0496113_0341782
320 Ga0496113_0500629
321 Ga0496114_0042599
322 Ga0496114_0092564
323 Ga0496114_0106625
324 Ga0496114_0161531
325 Ga0496114_0253860
326 Ga0496114_0528622
327 Ga0496117_0001642
328 Ga0496118_0007657
329 Ga0496119_0002900
330 Ga0496120_0058926
331 Ga0496122_0000240
332 Ga0496122_0000275
333 Ga0496123_0000076
334 Ga0496123_0000166
335 Ga0496124_0000205
336 Ga0496124_0002643
337 Ga0496125_0003396
338 Ga0496126_0019963
339 Ga0496126_0445757
340 Ga0501031_0010666
341 Ga0501032_0019259
342 Ga0501033_0132646
343 Ga0501034_0004950
344 Ga0501034_0015763
345 Ga0501034_0145988
346 Ga0501034_1014900
347 Ga0501036_0017598
348 Ga0501037_0516785
349 Ga0501038_0018578
350 Ga0501038_0041602
351 Ga0501038_0068050
352 Ga0501038_0106284
353 Ga0501041_0296287
354 Ga0501046_0017519
355 Ga0501047_0024632
356 Ga0501067_0004052
357 Ga0501069_0126978
358 Ga0501070_0247313
359 Ga0501071_0141792
360 Ga0501074_0041170
361 Ga0501080_0521128
362 Ga0501083_0007075
363 Ga0501035_0007453
364 Ga0501035_0201660
365 Ga0501044_0003438
366 Ga0501044_0107280
367 Ga0501044_0159621
368 Ga0501084_0052130
369 Ga0501082_0065320
370 Ga0466962_0019371
371 2559424682
372 2586060662
373 2644445285
374 2644503796
375 2644527134
376 2644609630
377 2644670137
378 2729904864
379 2784472081
380 2809589207
381 2812374864
382 2819427601
383 2819666459
384 2819691625
385 2819729595
386 2861520878
387 2884995579
388 2915771495
389 2946033792
390 8055036123
391 8055038364
392 8057568749

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01330

RuvA_N

RuvA N terminal domain

27

86

0.99

PF07499

RuvA_C

RuvA, C-terminal domain

175

226

0.92

PF14520

HHH_5

Helix-hairpin-helix domain

96

154

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2zte-assembly1.cif.gz_A mtruva form iv 0.9836 2 130
7pbu-assembly1.cif.gz_F ruvab branch migration motor complexed to the holliday junction - ruva-hj core [t2 dataset] 0.9578 1 130
2zte-assembly1.cif.gz_A mtruva form iv 0.9474 2 130
1ixr-assembly1.cif.gz_A ruva-ruvb complex 0.9456 1 131
7x7q-assembly1.cif.gz_G cryoem structure of ruva-ruvb-holliday junction complex 0.9443 1 133
ID Description Score Start End Superfamily
2ztdA01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9909 2 64 2.40.50.140
2h5xC02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9885 66 132 1.10.150.20
2zteA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9871 64 130 1.10.150.20
2h5xD02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9862 66 132 1.10.150.20
2h5xB02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9824 66 132 1.10.150.20
ID Description Score Start End GO Terms
AF-V7KDP7-F1-model_v4 deleted 0.9953 1 133
AF-A0A355BKX3-F1-model_v4 Holliday junction branch migration protein RuvA 0.9921 3 62 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A7V2NQE7-F1-model_v4 Holliday junction branch migration protein RuvA (EC 3.6.4.12) 0.9904 1 130 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
GO:0016787
GO:0036121
GO:0061749
GO:1990518
AF-A0A349AWV7-F1-model_v4 Holliday junction branch migration protein RuvA 0.9858 1 103 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
AF-W1V4X5-F1-model_v4 Holliday junction ATP-dependent DNA helicase RuvA 0.9856 1 66 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378

Map