F300752

General Info

Members Datasets Scaffolds Average Seq Length
195 157 126 454

Family's Representative Sequence

Representative Sequence 3300050515|nmdc:mga0a205_30573_c1|nmdc:mga0a205_30573_c1_3171_4649
Length 492
Sequence LATGGEDQVPRFSIPRFPIYLIESSTARAHGRAVQTVPTLVIAGTHSGVGKTSVATALIAALARRGLKVQPFKIGPDFIDPTFHRAAAGRACRNLDGWMLPRETNLRLFARASEGADIAVVEGVMGLFDGHDGRTEAGSTAEMAKWLGSPVVLVADASALARSAGALVLGFETFDPDVDVAGVIFNRVGGPGHFAYLRDALAARCRSAPLGWLKQDPEVALPDRHLGLVMADEILTPARLDRLIAWLEANVDVDRLVQLARGRPPLQIDVPDTRETVPAPPPRIGVARDPAFSFYYEDNLDLLRRSGAALIEFSPIADAHLPEDVDGLYLGGGYPELHAAALAANASMRRDIAALARGGTPVYAECGGFMYLTEAIVDASGRVFEMAGVFPTRARMQTSLAALAYVEVEPSGGGGFLPRGRSARGHEFRWSAIDPMPDGVERCYRVKSKCGERADGFRIGQTLASYVHLHFESCPDFAARFVAACRRRKDHS

Samples

Sample ID Description Type Environment
1 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
2 2547132181 Kosakonia sacchari SP1 Isolate Stem
3 2554235234 Klebsiella michiganensis SA2 Isolate Unclassified
4 2561511199 Enterobacter sp. R4-368 Isolate Nodule
5 2599185169 Klebsiella quasipneumoniae NFPP35 Isolate Rhizoplane
6 2600255254 Klebsiella quasipneumoniae NFIX15 Isolate Rhizoplane
7 2600255255 Klebsiella quasipneumoniae NFIX23 Isolate Rhizoplane
8 2600255256 Enterobacter sp. NFIX08 Isolate Rhizoplane
9 2600255257 Enterobacter sp. NFIX03 Isolate Rhizoplane
10 2600255280 Klebsiella quasipneumoniae NFIX42 Isolate Rhizoplane
11 2600255281 Klebsiella quasipneumoniae NFIX43 Isolate Rhizoplane
12 2600255287 Klebsiella quasipneumoniae NFIX11 Isolate Rhizoplane
13 2600255288 Klebsiella quasipneumoniae NFIX14 Isolate Rhizoplane
14 2600255289 Klebsiella quasipneumoniae NFIX16 Isolate Rhizoplane
15 2600255290 Klebsiella quasipneumoniae NFIX17 Isolate Rhizoplane
16 2600255291 Klebsiella quasipneumoniae NFIX19 Isolate Rhizoplane
17 2600255298 Klebsiella quasipneumoniae NFIX21 Isolate Rhizoplane
18 2600255299 Klebsiella quasipneumoniae NFIX22 Isolate Rhizoplane
19 2600255300 Klebsiella quasipneumoniae NFIX30 Isolate Rhizoplane
20 2600255301 Klebsiella quasipneumoniae NFIX33 Isolate Rhizoplane
21 2600255302 Klebsiella quasipneumoniae NFIX35 Isolate Rhizoplane
22 2600255303 Klebsiella quasipneumoniae NFIX36 Isolate Rhizoplane
23 2600255304 Klebsiella quasipneumoniae NFIX37 Isolate Rhizoplane
24 2600255305 Klebsiella quasipneumoniae NFIX41 Isolate Rhizoplane
25 2600255306 Klebsiella quasipneumoniae NFIX44 Isolate Rhizoplane
26 2600255307 Klebsiella quasipneumoniae NFIX56 Isolate Rhizoplane
27 2600255309 Klebsiella sp. NFIX53 Isolate Rhizoplane
28 2600255310 Enterobacter sp. NFIX06 Isolate Rhizoplane
29 2600255311 Enterobacter sp. NFIX04 Isolate Rhizoplane
30 2600255392 Klebsiella quasipneumoniae NFIX54 Isolate Rhizoplane
31 2602042046 Enterobacter sp. NFIX09 Isolate Rhizoplane
32 2602042047 Enterobacter sp. NFIX59 Isolate Rhizoplane
33 2602042052 Klebsiella quasipneumoniae NFIX18 Isolate Rhizoplane
34 2602042053 Klebsiella quasipneumoniae NFIX12 Isolate Rhizoplane
35 2602042103 Klebsiella quasipneumoniae NFIX29 Isolate Rhizoplane
36 2602042104 Klebsiella quasipneumoniae NFIX26 Isolate Rhizoplane
37 2602042105 Klebsiella quasipneumoniae NFIX25 Isolate Rhizoplane
38 2602042106 Klebsiella quasipneumoniae NFIX13 Isolate Rhizoplane
39 2602042110 Klebsiella quasipneumoniae NFIX40 Isolate Rhizoplane
40 2602042111 Klebsiella quasipneumoniae NFIX20 Isolate Rhizoplane
41 2603880178 Klebsiella quasipneumoniae NFIX34 Isolate Rhizoplane
42 2603880184 Klebsiella quasipneumoniae NFIX27 Isolate Rhizoplane
43 2603880202 Klebsiella quasipneumoniae NFIX38 Isolate Rhizoplane
44 2603880211 Klebsiella quasipneumoniae NFIX24 Isolate Rhizoplane
45 2609459761 Enterobacter sp. NFR05 Isolate Rhizoplane
46 2636415599 Klebsiella variicola DX120E Isolate Unclassified
47 2675903046 Klebsiella quasipneumoniae NFIX52 Isolate Rhizoplane
48 2775506706 Enterobacter asburiae 1216 Isolate Unclassified
49 2775507074 Klebsiella sp. D5A Isolate Unclassified
50 2791354903 Mangrovibacter phragmitis MP23 Isolate Unclassified
51 2791355010 Kosakonia pseudosacchari NN143 Isolate Unclassified
52 2811995292 Kosakonia oryzae Ola 51 Isolate Unclassified
53 2814123068 Kosakonia radicincitans GXGL-4A Isolate Rhizosphere
54 2837183177 Egibacter rhizosphaerae EGI 80759 Isolate Unclassified
55 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
56 2904513164 Klebsiella variicola 1431 Isolate Rhizosphere
57 2919108558 Klebsiella sp. 1400 Isolate Rhizosphere
58 2929297113 Heliophilum fasciatum MTM Isolate Rhizosphere
59 2932406140 Serratia sp. 2723 Isolate Rhizosphere
60 2937539931 Pantoea sp. LS15 Isolate Unclassified
61 2939573065 Citrobacter sp. 506 Isolate Rhizosphere
62 2939577877 Serratia sp. 509 Isolate Rhizosphere
63 2945874760 Phytobacter diazotrophicus UAEU22 Isolate Rhizosphere
64 2969079654 Klebsiella variicola E57-7 Isolate Unclassified
65 2971820967 Klebsiella sp. MPUS7 Isolate Rhizosphere
66 2984559226 Klebsiella variicola SORGH_AS834 Isolate Aerial Root
67 2984595703 Klebsiella variicola SORGH_AS1070 Isolate Aerial Root
68 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
69 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
70 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
71 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
72 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
73 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
74 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
75 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
76 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
77 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
78 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
79 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
80 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
81 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
82 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
83 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
84 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
85 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
86 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
87 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
88 3300015679 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.4_F08 Metagenome Unclassified
89 3300015680 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.2_H03 Metagenome Rhizosphere
90 3300015685 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.5_G12 Metagenome Unclassified
91 3300015687 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 002.1_G08 Metagenome Rhizosphere
92 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
93 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
94 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
95 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
101 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
102 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
103 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
104 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
105 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
106 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
107 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
108 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
109 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
110 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
111 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
112 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
113 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
114 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
115 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
116 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
117 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
118 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
119 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
120 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
121 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
122 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
123 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
124 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
125 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
126 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
127 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
128 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
129 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
130 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
131 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
132 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
133 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
136 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
137 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
138 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
139 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
140 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
141 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
142 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
143 3300049650 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_A_0_drought Metagenome Rhizosphere
144 3300049655 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_B_0_drought Metagenome Rhizosphere
145 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
146 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
147 3300049708 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D14_A_3_control Metagenome Rhizosphere
148 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
149 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
150 3300049768 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_B_4_drought Metagenome Rhizosphere
151 3300049773 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_B_4_control Metagenome Rhizosphere
152 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
153 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
154 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
155 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
156 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
157 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 63.59
Metatranscriptomes 1.03
Isolates 35.38

Biome Distribution

Category Percentage (%)
Aerial Root 2.05
Bulb 0
Endosphere 0.51
Nodule 1.54
Rhizoplane 22.56
Rhizosphere 53.33
Stem 0.51
Stem Tuber 0
Unclassified 19.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0058692_1002640 3300003856 Bacteria 5904
2 JGI25405J52794_10002389 3300003911 Bacteria 3227
3 Ga0070699_100020877 3300005518 Bacteria 5647
4 Ga0068855_100129499 3300005563 Bacteria 2883
5 Ga0068864_100221636 3300005618 Unclassified 1745
6 Ga0081455_10000364 3300005937 Bacteria 59805
7 Ga0070717_10066453 3300006028 Bacteria 2999
8 Ga0075428_100064502 3300006844 Bacteria 4011
9 Ga0075431_100166264 3300006847 Bacteria 2267
10 Ga0075433_10064758 3300006852 Bacteria 3205
11 Ga0075433_10117870 3300006852 Unclassified 2356
12 Ga0075433_10149436 3300006852 Bacteria 2078
13 Ga0079104_1000440 3300006946 Bacteria 47213
14 Ga0075435_100029733 3300007076 Bacteria 4289
15 Ga0105251_10008150 3300009011 Bacteria 6338
16 Ga0105251_10011619 3300009011 Bacteria 5024
17 Ga0105251_10017448 3300009011 Bacteria 3846
18 Ga0105251_10019683 3300009011 Bacteria 3559
19 Ga0105244_10001440 3300009036 Bacteria 19259
20 Ga0105244_10008559 3300009036 Bacteria 6381
21 Ga0105250_10000240 3300009092 Bacteria 45513
22 Ga0105250_10001726 3300009092 Bacteria 11527
23 Ga0105250_10003096 3300009092 Bacteria 8001
24 Ga0114129_10260879 3300009147 Unclassified 2323
25 Ga0163162_10147995 3300013306 Bacteria 2465
26 Ga0157380_10184234 3300014326 Bacteria 1837
27 Ga0183366_1001 3300015679 Bacteria 2743932
28 Ga0183370_1001 3300015680 Bacteria 2743932
29 Ga0183369_1001 3300015685 Bacteria 2743932
30 Ga0183368_1001 3300015687 Bacteria 2743932
31 Ga0206352_10260663 3300020078 Bacteria 3738
32 Ga0206350_10990978 3300020080 Bacteria 3544
33 Ga0213876_10000034 3300021384 Bacteria 202967
34 Ga0207696_1000053 3300025711 Bacteria 268590
35 Ga0207696_1000520 3300025711 Bacteria 31938
36 Ga0207655_1012727 3300025728 Bacteria 4887
37 Ga0207713_1000082 3300025735 Bacteria 164992
38 Ga0207713_1000880 3300025735 Bacteria 27401
39 Ga0207713_1022545 3300025735 Bacteria 2985
40 Ga0207713_1026424 3300025735 Bacteria 2660
41 Ga0207693_10126519 3300025915 Bacteria 2009
42 Ga0207652_10323460 3300025921 Bacteria 1392
43 Ga0209281_1000001 3300027111 Bacteria 1933496
44 Ga0209371_1000002 3300027312 Bacteria 1551985
45 Ga0209371_1000746 3300027312 Bacteria 27126
46 Ga0268256_1000002 3300030500 Bacteria 1535763
47 Ga0268256_1000504 3300030500 Bacteria 32957
48 Ga0307405_10054078 3300031731 Unclassified 2504
49 Ga0307416_100131355 3300032002 Bacteria 2255
50 Ga0373937_0201025 3300036401 Bacteria 1873
51 Ga0395898_0033464 3300037466 Bacteria 5129
52 Ga0400483_013864 3300039062 Bacteria 11864
53 Ga0436365_0868896 3300039437 Bacteria 14604
54 Ga0436365_0965775 3300039437 Bacteria 470291
55 Ga0436365_1640740 3300039437 Bacteria 2003
56 Ga0450906_011801 3300042145 Archaea 1628
57 Ga0439434_0009277 3300042435 Archaea 2890
58 Ga0451577_0150854 3300042876 Archaea 2091
59 Ga0466969_0000095 3300044656 Bacteria 46163
60 Ga0466969_0015592 3300044656 Unclassified 3982
61 Ga0453683_0000435 3300044673 Bacteria 47770
62 Ga0466966_0002844 3300044684 Bacteria 11388
63 Ga0466966_0011817 3300044684 Bacteria 5781
64 Ga0466961_0005147 3300044693 Bacteria 8226
65 Ga0466961_0009921 3300044693 Bacteria 6067
66 Ga0466964_0024515 3300044706 Bacteria 2351
67 Ga0453684_0000145 3300044712 Archaea 313029
68 Ga0453684_0006892 3300044712 Archaea 21318
69 Ga0453684_0020426 3300044712 Bacteria 9989
70 Ga0466968_0001856 3300044735 Bacteria 7638
71 Ga0466970_0003316 3300044765 Bacteria 7827
72 Ga0466957_0083140 3300044842 Unclassified 1996
73 Ga0466959_0004648 3300045049 Bacteria 9236
74 Ga0466959_0017927 3300045049 Bacteria 5194
75 Ga0466958_0003272 3300045836 Bacteria 8377
76 Ga0466967_0202107 3300045976 Bacteria 1882
77 Ga0495597_0000513 3300046542 Bacteria 32157
78 Ga0495597_0001091 3300046542 Bacteria 20586
79 Ga0495625_0002866 3300046660 Bacteria 18070
80 Ga0495588_0002116 3300046674 Bacteria 8523
81 Ga0495588_0003587 3300046674 Bacteria 6782
82 Ga0495674_0046416 3300047319 Bacteria 3856
83 Ga0495672_0000009 3300047320 Bacteria 557755
84 Ga0495679_000309 3300047446 Bacteria 39033
85 Ga0495681_0036591 3300047470 Bacteria 2426
86 Ga0496104_0000154 3300048907 Bacteria 62631
87 Ga0496105_0000613 3300048908 Bacteria 23855
88 Ga0496116_0004301 3300048919 Bacteria 13631
89 Ga0496117_0033217 3300048920 Bacteria 3904
90 Ga0496118_0002312 3300048921 Bacteria 25885
91 Ga0496119_0004225 3300048922 Bacteria 14409
92 Ga0496119_0011961 3300048922 Bacteria 7110
93 Ga0496120_0000725 3300048923 Bacteria 48287
94 Ga0496121_0000554 3300048924 Bacteria 70589
95 Ga0496122_0001144 3300048925 Bacteria 45511
96 Ga0496122_0015165 3300048925 Bacteria 7385
97 Ga0496122_0015568 3300048925 Bacteria 7260
98 Ga0496123_0000917 3300048926 Bacteria 46208
99 Ga0496123_0002345 3300048926 Bacteria 23746
100 Ga0496123_0030343 3300048926 Bacteria 3958
101 Ga0496123_0103642 3300048926 Bacteria 1647
102 Ga0496125_0000065 3300048928 Bacteria 249830
103 Ga0496125_0000978 3300048928 Bacteria 44685
104 Ga0496125_0009564 3300048928 Bacteria 9932
105 Ga0496126_0000860 3300048929 Bacteria 53466
106 Ga0496126_0001812 3300048929 Bacteria 31279
107 Ga0496126_0121940 3300048929 Bacteria 2260
108 Ga0496126_0225402 3300048929 Bacteria 1572
109 Ga0501199_002852 3300049650 Archaea 1635
110 Ga0501208_003855 3300049655 Archaea 1720
111 Ga0501235_002372 3300049669 Archaea 4062
112 Ga0501234_000843 3300049707 Archaea 4808
113 Ga0501245_001202 3300049708 Archaea 3342
114 Ga0501265_003582 3300049762 Archaea 1764
115 Ga0501266_000558 3300049763 Archaea 4934
116 Ga0501271_000485 3300049768 Archaea 3456
117 Ga0501276_000694 3300049773 Archaea 2111
118 nmdc:mga05p37_352751_c1 3300050507 Bacteria 1732
119 nmdc:mga09592_142839_c1 3300050508 Unclassified 2064
120 nmdc:mga0n895_480818_c1 3300050512 Archaea 1252
121 nmdc:mga0n895_83355_c1 3300050512 Bacteria 3188
122 nmdc:mga08x19_24040_c1 3300050514 Bacteria 3783
123 nmdc:mga0a205_21129_c1 3300050515 Bacteria 6155
124 nmdc:mga0a205_30573_c1 3300050515 Bacteria 5157
125 nmdc:mga0a205_46123_c1 3300050515 Bacteria 4203
126 Ga0500628_000250 3300053129 Bacteria 10328

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050507 nmdc:mga05p37_352751_c1 nmdc:mga05p37_352751_c1_78_1148 346
2 3300050512 nmdc:mga0n895_480818_c1 nmdc:mga0n895_480818_c1_20_1129 364
3 3300042145 Ga0450906_011801 Ga0450906_011801_93_1268 367
4 3300046542 Ga0495597_0000513 Ga0495597_0000513_28692_29873 393
5 3300048929 Ga0496126_0225402 Ga0496126_0225402_310_1491 393
6 3300044712 Ga0453684_0006892 Ga0453684_0006892_7176_8429 402
7 3300025921 Ga0207652_10323460 Ga0207652_103234601 405
8 3300036401 Ga0373937_0201025 Ga0373937_0201025_375_1625 412
9 3300039437 Ga0436365_0868896 Ga0436365_0868896_2496_3746 412
10 3300042876 Ga0451577_0150854 Ga0451577_0150854_33_1286 415
11 3300044712 Ga0453684_0000145 Ga0453684_0000145_232500_233753 415
12 3300048926 Ga0496123_0103642 Ga0496123_0103642_360_1616 418
13 3300039062 Ga0400483_013864 Ga0400483_013864_7986_9353 423
14 3300037466 Ga0395898_0033464 Ga0395898_0033464_298_1605 426
15 3300003911 JGI25405J52794_10002389 JGI25405J52794_100023893 429
16 3300005937 Ga0081455_10000364 Ga0081455_1000036434 429
17 3300032002 Ga0307416_100131355 Ga0307416_1001313552 429
18 iso_pu_bacteria 2990265787 2990267984 429
19 iso_pu_bacteria 2993693658 2993696997 429
20 3300006028 Ga0070717_10066453 Ga0070717_100664533 431
21 3300042435 Ga0439434_0009277 Ga0439434_0009277_1494_2861 431
22 3300049655 Ga0501208_003855 Ga0501208_003855_228_1595 431
23 3300049708 Ga0501245_001202 Ga0501245_001202_227_1594 431
24 3300031731 Ga0307405_10054078 Ga0307405_100540782 432
25 3300049650 Ga0501199_002852 Ga0501199_002852_227_1594 432
26 3300049669 Ga0501235_002372 Ga0501235_002372_1795_3162 432
27 3300049707 Ga0501234_000843 Ga0501234_000843_1645_3012 432
28 3300049762 Ga0501265_003582 Ga0501265_003582_79_1446 432
29 3300049763 Ga0501266_000558 Ga0501266_000558_1768_3135 432
30 3300049768 Ga0501271_000485 Ga0501271_000485_100_1467 432
31 3300049773 Ga0501276_000694 Ga0501276_000694_619_1986 432
32 3300006844 Ga0075428_100064502 Ga0075428_1000645022 434
33 3300006847 Ga0075431_100166264 Ga0075431_1001662642 436
34 3300009147 Ga0114129_10260879 Ga0114129_102608792 436
35 3300050512 nmdc:mga0n895_83355_c1 nmdc:mga0n895_83355_c1_1204_2550 436
36 3300009011 Ga0105251_10017448 Ga0105251_100174483 438
37 3300025735 Ga0207713_1026424 Ga0207713_10264242 438
38 3300027312 Ga0209371_1000746 Ga0209371_100074618 438
39 3300030500 Ga0268256_1000504 Ga0268256_100050420 438
40 3300005563 Ga0068855_100129499 Ga0068855_1001294993 440
41 iso_pu_bacteria 2837183177 2837185186 441
42 3300025915 Ga0207693_10126519 Ga0207693_101265192 444
43 3300014326 Ga0157380_10184234 Ga0157380_101842341 447
44 3300009011 Ga0105251_10011619 Ga0105251_100116192 449
45 3300025735 Ga0207713_1022545 Ga0207713_10225452 449
46 3300044656 Ga0466969_0015592 Ga0466969_0015592_2276_3661 449
47 3300044684 Ga0466966_0002844 Ga0466966_0002844_4809_6194 449
48 3300044693 Ga0466961_0005147 Ga0466961_0005147_1919_3304 449
49 3300044712 Ga0453684_0020426 Ga0453684_0020426_4953_6320 449
50 3300044842 Ga0466957_0083140 Ga0466957_0083140_55_1440 449
51 3300045049 Ga0466959_0004648 Ga0466959_0004648_4546_5931 449
52 3300045836 Ga0466958_0003272 Ga0466958_0003272_892_2277 449
53 3300039437 Ga0436365_1640740 Ga0436365_1640740_161_1525 450
54 3300044673 Ga0453683_0000435 Ga0453683_0000435_43942_45315 450
55 iso_pu_bacteria 2929297113 2929299117 450
56 3300005618 Ga0068864_100221636 Ga0068864_1002216361 453
57 3300013306 Ga0163162_10147995 Ga0163162_101479952 453
58 3300053129 Ga0500628_000250 Ga0500628_000250_6951_8330 453
59 iso_pu_bacteria 2561511199 2562463308 453
60 3300005518 Ga0070699_100020877 Ga0070699_1000208774 454
61 3300006852 Ga0075433_10064758 Ga0075433_100647583 454
62 3300006852 Ga0075433_10117870 Ga0075433_101178703 454
63 3300006852 Ga0075433_10149436 Ga0075433_101494361 454
64 3300007076 Ga0075435_100029733 Ga0075435_1000297333 454
65 3300047319 Ga0495674_0046416 Ga0495674_0046416_1902_3308 454
66 3300050508 nmdc:mga09592_142839_c1 nmdc:mga09592_142839_c1_518_1894 454
67 3300050514 nmdc:mga08x19_24040_c1 nmdc:mga08x19_24040_c1_352_1728 454
68 3300050515 nmdc:mga0a205_21129_c1 nmdc:mga0a205_21129_c1_3970_5346 454
69 3300050515 nmdc:mga0a205_46123_c1 nmdc:mga0a205_46123_c1_654_2030 454
70 iso_pu_bacteria 2636415599 2637223534 454
71 iso_pu_bacteria 2775507074 2777019850 454
72 iso_pu_bacteria 2904513164 2904516818 454
73 iso_pu_bacteria 2969079654 2969080568 454
74 iso_pu_bacteria 2984559226 2984563009 454
75 iso_pu_bacteria 2984595703 2984601067 454
76 3300020078 Ga0206352_10260663 Ga0206352_102606633 455
77 3300020080 Ga0206350_10990978 Ga0206350_109909783 455
78 3300044693 Ga0466961_0009921 Ga0466961_0009921_3496_4896 455
79 3300045976 Ga0466967_0202107 Ga0466967_0202107_45_1430 455
80 iso_pu_bacteria 2512564039 2512735890 455
81 iso_pu_bacteria 2547132181 2547697151 455
82 iso_pu_bacteria 2554235234 2555258479 455
83 iso_pu_bacteria 2599185169 2599409922 455
84 iso_pu_bacteria 2600255254 2601523116 455
85 iso_pu_bacteria 2600255255 2601528275 455
86 iso_pu_bacteria 2600255280 2601615108 455
87 iso_pu_bacteria 2600255281 2601619966 455
88 iso_pu_bacteria 2600255287 2601643574 455
89 iso_pu_bacteria 2600255288 2601648371 455
90 iso_pu_bacteria 2600255289 2601653160 455
91 iso_pu_bacteria 2600255290 2601658719 455
92 iso_pu_bacteria 2600255291 2601663397 455
93 iso_pu_bacteria 2600255298 2601696720 455
94 iso_pu_bacteria 2600255299 2601701030 455
95 iso_pu_bacteria 2600255300 2601705815 455
96 iso_pu_bacteria 2600255301 2601711400 455
97 iso_pu_bacteria 2600255302 2601716418 455
98 iso_pu_bacteria 2600255303 2601721746 455
99 iso_pu_bacteria 2600255304 2601726824 455
100 iso_pu_bacteria 2600255305 2601731364 455
101 iso_pu_bacteria 2600255306 2601736376 455
102 iso_pu_bacteria 2600255307 2601740640 455
103 iso_pu_bacteria 2600255309 2601751577 455
104 iso_pu_bacteria 2600255392 2602018563 455
105 iso_pu_bacteria 2602042047 2603643004 455
106 iso_pu_bacteria 2602042052 2603660781 455
107 iso_pu_bacteria 2602042053 2603666054 455
108 iso_pu_bacteria 2602042103 2603838759 455
109 iso_pu_bacteria 2602042104 2603843981 455
110 iso_pu_bacteria 2602042105 2603848915 455
111 iso_pu_bacteria 2602042106 2603853986 455
112 iso_pu_bacteria 2602042110 2603872040 455
113 iso_pu_bacteria 2602042111 2603876866 455
114 iso_pu_bacteria 2603880178 2606049222 455
115 iso_pu_bacteria 2603880184 2606070487 455
116 iso_pu_bacteria 2603880202 2606146905 455
117 iso_pu_bacteria 2603880211 2606176631 455
118 iso_pu_bacteria 2609459761 2609909905 455
119 iso_pu_bacteria 2675903046 2676408291 455
120 iso_pu_bacteria 2775506706 2775542198 455
121 iso_pu_bacteria 2791355010 2792310383 455
122 iso_pu_bacteria 2919108558 2919110335 455
123 iso_pu_bacteria 2937539931 2937543364 455
124 iso_pu_bacteria 2939573065 2939573114 455
125 iso_pu_bacteria 2945874760 2945877104 455
126 iso_pu_bacteria 2971820967 2971821949 455
127 3300048929 Ga0496126_0121940 Ga0496126_0121940_661_2067 456
128 iso_pu_bacteria 2791354903 2791922007 456
129 iso_pu_bacteria 2891670763 2891672183 456
130 iso_pu_bacteria 2932406140 2932409784 456
131 iso_pu_bacteria 2939577877 2939578902 456
132 3300044656 Ga0466969_0000095 Ga0466969_0000095_453_1886 457
133 3300044684 Ga0466966_0011817 Ga0466966_0011817_440_1873 457
134 3300044706 Ga0466964_0024515 Ga0466964_0024515_359_1792 457
135 3300044735 Ga0466968_0001856 Ga0466968_0001856_446_1879 457
136 3300044765 Ga0466970_0003316 Ga0466970_0003316_3663_5096 457
137 3300045049 Ga0466959_0017927 Ga0466959_0017927_396_1829 457
138 3300006946 Ga0079104_1000440 Ga0079104_100044030 459
139 3300009011 Ga0105251_10008150 Ga0105251_100081502 459
140 3300009011 Ga0105251_10019683 Ga0105251_100196834 459
141 3300009036 Ga0105244_10001440 Ga0105244_100014402 459
142 3300009092 Ga0105250_10000240 Ga0105250_1000024032 459
143 3300009092 Ga0105250_10001726 Ga0105250_1000172612 459
144 3300015679 Ga0183366_1001 Ga0183366_1001777 459
145 3300015680 Ga0183370_1001 Ga0183370_1001777 459
146 3300015685 Ga0183369_1001 Ga0183369_1001777 459
147 3300015687 Ga0183368_1001 Ga0183368_1001777 459
148 3300021384 Ga0213876_10000034 Ga0213876_1000003485 459
149 3300025711 Ga0207696_1000053 Ga0207696_100005328 459
150 3300025711 Ga0207696_1000520 Ga0207696_10005202 459
151 3300025728 Ga0207655_1012727 Ga0207655_10127274 459
152 3300025735 Ga0207713_1000082 Ga0207713_100008261 459
153 3300025735 Ga0207713_1000880 Ga0207713_100088011 459
154 3300027111 Ga0209281_1000001 Ga0209281_100000160 459
155 3300039437 Ga0436365_0965775 Ga0436365_0965775_362464_363843 459
156 3300046674 Ga0495588_0003587 Ga0495588_0003587_5158_6537 459
157 3300047470 Ga0495681_0036591 Ga0495681_0036591_376_1755 459
158 3300048907 Ga0496104_0000154 Ga0496104_0000154_25121_26500 459
159 3300048908 Ga0496105_0000613 Ga0496105_0000613_4970_6349 459
160 3300048919 Ga0496116_0004301 Ga0496116_0004301_10540_11919 459
161 3300048920 Ga0496117_0033217 Ga0496117_0033217_236_1615 459
162 3300048921 Ga0496118_0002312 Ga0496118_0002312_6739_8118 459
163 3300048922 Ga0496119_0004225 Ga0496119_0004225_8356_9735 459
164 3300048922 Ga0496119_0011961 Ga0496119_0011961_1003_2382 459
165 3300048923 Ga0496120_0000725 Ga0496120_0000725_22955_24334 459
166 3300048924 Ga0496121_0000554 Ga0496121_0000554_35047_36426 459
167 3300048925 Ga0496122_0001144 Ga0496122_0001144_15269_16648 459
168 3300048925 Ga0496122_0015165 Ga0496122_0015165_1606_2985 459
169 3300048925 Ga0496122_0015568 Ga0496122_0015568_1003_2382 459
170 3300048926 Ga0496123_0000917 Ga0496123_0000917_29561_30940 459
171 3300048926 Ga0496123_0002345 Ga0496123_0002345_17245_18624 459
172 3300048926 Ga0496123_0030343 Ga0496123_0030343_1502_2881 459
173 3300048928 Ga0496125_0000065 Ga0496125_0000065_118122_119501 459
174 3300048928 Ga0496125_0000978 Ga0496125_0000978_36182_37561 459
175 3300048928 Ga0496125_0009564 Ga0496125_0009564_4080_5459 459
176 3300048929 Ga0496126_0000860 Ga0496126_0000860_45545_46924 459
177 3300048929 Ga0496126_0001812 Ga0496126_0001812_23372_24751 459
178 3300009036 Ga0105244_10008559 Ga0105244_100085592 460
179 3300009092 Ga0105250_10003096 Ga0105250_100030967 460
180 3300046542 Ga0495597_0001091 Ga0495597_0001091_13274_14656 460
181 3300046660 Ga0495625_0002866 Ga0495625_0002866_1516_2898 460
182 3300046674 Ga0495588_0002116 Ga0495588_0002116_1659_3041 460
183 3300047320 Ga0495672_0000009 Ga0495672_0000009_484294_485676 460
184 3300047446 Ga0495679_000309 Ga0495679_000309_15389_16771 460
185 3300050515 nmdc:mga0a205_30573_c1 nmdc:mga0a205_30573_c1_3171_4649 476
186 iso_pu_bacteria 2600255256 2601534793 482
187 iso_pu_bacteria 2600255257 2601539578 482
188 iso_pu_bacteria 2600255310 2601757928 482
189 iso_pu_bacteria 2600255311 2601764286 482
190 iso_pu_bacteria 2602042046 2603637103 482
191 iso_pu_bacteria 2811995292 2813728120 482
192 iso_pu_bacteria 2814123068 2814695664 482
193 3300003856 Ga0058692_1002640 Ga0058692_10026403 486
194 3300027312 Ga0209371_1000002 Ga0209371_10000021290 486
195 3300030500 Ga0268256_1000002 Ga0268256_1000002172 486

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01656

CbiA

CobQ/CobB/MinD/ParA nucleotide binding domain

40

229

0.93

PF07685

GATase_3

CobB/CobQ-like glutamine amidotransferase domain

283

475

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3zn8-assembly1.cif.gz_A structural basis of signal sequence surveillance and selection by the srp-sr complex 0.7429 31 210
5n9m-assembly2.cif.gz_B crystal structure of gatd - a glutamine amidotransferase from staphylococcus aureus involved in peptidoglycan amidation 0.7404 278 484
2wjz-assembly3.cif.gz_D crystal structure of (hish) k181a y138a mutant of imidazoleglycerolphosphate synthase (hish hisf) which displays constitutive glutaminase activity 0.7404 278 482
1dts-assembly1.cif.gz_A-2 crystal structure of an atp dependent carboxylase, dethiobiotin synthase, at 1.65 angstroms resolution 0.7359 32 215
7ac8-assembly3.cif.gz_F error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.7343 278 482
ID Description Score Start End Superfamily
af_Q58816_43_191_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9288 75 220 3.40.50.300
af_P9WP97_251_439_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9271 278 471 3.40.50.880
af_P9WP97_251_439_3.40.50.880 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Class I glutamine amidotransferase (GATase) domain 0.9082 278 471 3.40.50.880
af_Q58816_43_191_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9052 75 220 3.40.50.300
af_Q57602_240_429_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.7801 31 216 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A2J5PQC3-F1-model_v4 Cobyrinic acid a,c-diamide synthase 0.9949 295 486 GO:0006541
GO:0009236
GO:0042242
AF-A0A381GL07-F1-model_v4 deleted 0.9919 365 486
AF-P29946-F1-model_v4 Cobyrinate a,c-diamide synthase (EC 6.3.5.11) (Cobyrinic acid a,c-diamide synthetase) [Cleaved into: Cobyrinate a,c-diamide synthase, N-terminally processed] 0.9913 28 486 GO:0005524
GO:0009236
GO:0042242
AF-P29946-F1-model_v4 Cobyrinate a,c-diamide synthase (EC 6.3.5.11) (Cobyrinic acid a,c-diamide synthetase) [Cleaved into: Cobyrinate a,c-diamide synthase, N-terminally processed] 0.9892 28 486 GO:0005524
GO:0009236
GO:0042242
AF-A0A378BD84-F1-model_v4 Cobyrinate a,c-diamide synthase (EC 6.3.5.11) (Cobyrinic acid a,c-diamide synthetase) 0.9878 31 432 GO:0005524
GO:0006541
GO:0009236
GO:0042242

Feature Viewer

pLDDT pTM Quality
86.93 0.86 High
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Predicted Structure (AlphaFold2)

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