F300605

General Info

Members Datasets Scaffolds Average Seq Length
195 134 390 568

Family's Representative Sequence

Representative Sequence 3300047321|Ga0495676_0049794|Ga0495676_0049794_1435_3339
Length 634
Sequence LTPSSRTAILPAIATHQPAEETMPEHETDTPPVEREDFIREIVKADLASGAARSIVTRFPPEPNGYLHIGHAKSICLNFGIARQFSGVCNLRMDDTNPAKEDVEYEDSIVADVKWLISGWADQCLGLKPAGATARHEMKNGQEDFHLPAVTSAQPAGGGLEAFRASDYFEALHAYAVRLIERGKAYVCDHTPQEVDRMRGAPGAPGEESHYRGRAVADSLDLFGRMKAGEFPDGARTLRARIDMSSPNVWLRDPVLYRIRHVAHHNTGDRWCVYPMYDFAHGLSDYIEGVTHSVCTLEFVPHRPLYDWLLEALDLPRPLPHQYEFARLDMTHTLMSKRKLLRLVQEGRVRGWDDPRMPTLSGMRRRGYPAAALRDFSERIGVARRENRVELALLEHCVREDLNRRALRRMAVLRPLKVVLENYPAGKVEHFEIPNNPEDPAAGTRKVPLSRELWIEQEDFRETPPPKFFRLSPGAEVRLRGAYLVRCTSVVKDPATGELTEVRASYDPATSSGNAPDGRKVKATIHWVSAVHALEGEVRLYDTLFTQEDPEDVPEGADFTEGINPASIEVLQGCKLEPMLAEASPGEPIQLERVGYFVLDPDSRPGALVLNRTVTLKDAWARIEKRQGAAAGSR

Samples

Sample ID Description Type Environment
1 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
13 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
31 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
47 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
48 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
69 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
70 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
71 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
72 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
77 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
78 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
79 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
80 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
81 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
82 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
83 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
84 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
85 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
86 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
87 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
88 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
89 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
90 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
91 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
92 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
93 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
94 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
95 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
96 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
97 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
98 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
99 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
102 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
103 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
104 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
105 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
108 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
115 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
119 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
120 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
121 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
125 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
126 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
127 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
128 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
129 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
130 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
131 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
132 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
133 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
134 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.03
Nodule 0
Rhizoplane 1.54
Rhizosphere 95.38
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495676_0049794 3300047321 Bacteria 3365
2 Ga0065712_10067837 3300005290 Bacteria 26727
3 Ga0065715_10119143 3300005293 Bacteria 2294
4 Ga0065707_10002122 3300005295 Bacteria 6179
5 Ga0070670_100001689 3300005331 Bacteria 17939
6 Ga0070670_100003517 3300005331 Bacteria 13022
7 Ga0070666_10015471 3300005335 Bacteria 4868
8 Ga0068868_100006348 3300005338 Bacteria 8360
9 Ga0070689_100001389 3300005340 Bacteria 15404
10 Ga0070689_100002616 3300005340 Bacteria 11789
11 Ga0070689_100059242 3300005340 Bacteria 2976
12 Ga0070687_100004066 3300005343 Bacteria 5778
13 Ga0070669_100013714 3300005353 Bacteria 5762
14 Ga0070675_100005223 3300005354 Bacteria 9909
15 Ga0070675_100053250 3300005354 Bacteria 3328
16 Ga0070673_100014010 3300005364 Bacteria 5569
17 Ga0070688_100000593 3300005365 Bacteria 18141
18 Ga0070688_100022528 3300005365 Bacteria 3694
19 Ga0070698_100077846 3300005471 Bacteria 3315
20 Ga0070699_100061975 3300005518 Bacteria 3241
21 Ga0070679_100159072 3300005530 Bacteria 2233
22 Ga0068853_100005805 3300005539 Bacteria 9724
23 Ga0070672_100020459 3300005543 Bacteria 4827
24 Ga0070686_100004355 3300005544 Bacteria 7802
25 Ga0068855_100055762 3300005563 Bacteria 4640
26 Ga0068854_100123628 3300005578 Bacteria 1968
27 Ga0068859_100034282 3300005617 Bacteria 5095
28 Ga0068859_100083152 3300005617 Bacteria 3244
29 Ga0068864_100018190 3300005618 Bacteria 5866
30 Ga0068864_100099866 3300005618 Bacteria 2572
31 Ga0068863_100022059 3300005841 Bacteria 6080
32 Ga0068863_100048055 3300005841 Bacteria 4046
33 Ga0068863_100099297 3300005841 Bacteria 2766
34 Ga0068860_100001838 3300005843 Bacteria 22607
35 Ga0068871_100065446 3300006358 Bacteria 2977
36 Ga0075428_100003595 3300006844 Bacteria 16987
37 Ga0075430_100007720 3300006846 Bacteria 9089
38 Ga0075430_100012909 3300006846 Bacteria 7119
39 Ga0075430_100072894 3300006846 Bacteria 2880
40 Ga0075434_100000019 3300006871 Bacteria 73391
41 Ga0075434_100063543 3300006871 Bacteria 3674
42 Ga0075429_100000262 3300006880 Bacteria 36688
43 Ga0075429_100007790 3300006880 Bacteria 9303
44 Ga0075429_100017982 3300006880 Bacteria 6113
45 Ga0075436_100000160 3300006914 Bacteria 41885
46 Ga0075436_100004835 3300006914 Bacteria 9258
47 Ga0097620_100034284 3300006931 Bacteria 5095
48 Ga0097620_100083154 3300006931 Bacteria 3244
49 Ga0075435_100000041 3300007076 Bacteria 66202
50 Ga0075435_100001039 3300007076 Bacteria 17577
51 Ga0075435_100062208 3300007076 Bacteria 3029
52 Ga0111539_10000080 3300009094 Bacteria 97114
53 Ga0111539_10001003 3300009094 Bacteria 36985
54 Ga0111539_10009036 3300009094 Bacteria 12611
55 Ga0111539_10023354 3300009094 Bacteria 7597
56 Ga0111539_10113974 3300009094 Bacteria 3171
57 Ga0105245_10020877 3300009098 Bacteria 5742
58 Ga0114129_10015059 3300009147 Bacteria 11009
59 Ga0114129_10056464 3300009147 Bacteria 5499
60 Ga0105248_10015104 3300009177 Bacteria 8503
61 Ga0105249_10108756 3300009553 Bacteria 2618
62 Ga0157373_10020151 3300013100 Bacteria 4851
63 Ga0157369_10066660 3300013105 Bacteria 3872
64 Ga0157374_10005953 3300013296 Bacteria 10312
65 Ga0157374_10013862 3300013296 Bacteria 7043
66 Ga0163163_10105943 3300014325 Bacteria 2837
67 Ga0157380_10077439 3300014326 Bacteria 2710
68 Ga0157380_10128974 3300014326 Bacteria 2155
69 Ga0182008_10020145 3300014497 Bacteria 3437
70 Ga0157377_10018366 3300014745 Bacteria 3633
71 Ga0157376_10012827 3300014969 Bacteria 6234
72 Ga0213876_10030310 3300021384 Bacteria 2853
73 Ga0207680_10027950 3300025903 Bacteria 3149
74 Ga0207693_10005854 3300025915 Bacteria 10200
75 Ga0207663_10032592 3300025916 Bacteria 3095
76 Ga0207662_10000189 3300025918 Bacteria 28915
77 Ga0207662_10029440 3300025918 Bacteria 3182
78 Ga0207652_10163359 3300025921 Bacteria 1996
79 Ga0207650_10062020 3300025925 Bacteria 2792
80 Ga0207659_10003395 3300025926 Bacteria 9549
81 Ga0207659_10077503 3300025926 Bacteria 2446
82 Ga0207690_10028184 3300025932 Bacteria 3558
83 Ga0207670_10000370 3300025936 Bacteria 25957
84 Ga0207670_10003115 3300025936 Bacteria 8774
85 Ga0207670_10027998 3300025936 Bacteria 3571
86 Ga0207665_10082029 3300025939 Bacteria 2222
87 Ga0207691_10006367 3300025940 Bacteria 11407
88 Ga0207691_10050608 3300025940 Bacteria 3803
89 Ga0207679_10018082 3300025945 Bacteria 4714
90 Ga0207679_10071098 3300025945 Bacteria 2624
91 Ga0207677_10004685 3300026023 Bacteria 7368
92 Ga0207639_10084029 3300026041 Bacteria 2528
93 Ga0207641_10042716 3300026088 Bacteria 3804
94 Ga0207641_10054552 3300026088 Bacteria 3392
95 Ga0207676_10038610 3300026095 Bacteria 3646
96 Ga0207675_100056869 3300026118 Bacteria 3649
97 Ga0207675_100084262 3300026118 Bacteria 2983
98 Ga0207683_10038054 3300026121 Bacteria 4190
99 Ga0207428_10003296 3300027907 Bacteria 15699
100 Ga0207428_10011372 3300027907 Bacteria 7868
101 Ga0207428_10014110 3300027907 Bacteria 6957
102 Ga0268264_10005311 3300028381 Bacteria 10907
103 Ga0265332_10000162 3300031238 Bacteria 54127
104 Ga0265328_10002073 3300031239 Bacteria 9054
105 Ga0265325_10003672 3300031241 Bacteria 9938
106 Ga0265329_10006706 3300031242 Bacteria 4544
107 Ga0265331_10000034 3300031250 Bacteria 200155
108 Ga0265327_10005833 3300031251 Bacteria 10098
109 Ga0265316_10025225 3300031344 Bacteria 4964
110 Ga0265314_10000883 3300031711 Bacteria 35735
111 Ga0265314_10012669 3300031711 Bacteria 6861
112 Ga0265314_10040309 3300031711 Bacteria 3353
113 Ga0307407_10001867 3300031903 Bacteria 7932
114 Ga0307411_10006649 3300032005 Bacteria 5806
115 Ga0373930_0001589 3300034816 Bacteria 3414
116 Ga0373950_0006045 3300034818 Bacteria 1829
117 Ga0373928_0004549 3300035084 Bacteria 2644
118 Ga0373929_0002027 3300035085 Bacteria 3771
119 Ga0373934_0001947 3300035086 Bacteria 7571
120 Ga0373932_0000424 3300035112 Bacteria 12878
121 Ga0373941_0002558 3300035115 Bacteria 4023
122 Ga0373945_0023579 3300035116 Bacteria 2127
123 Ga0373956_0011021 3300035119 Bacteria 3722
124 Ga0373960_0000225 3300035121 Bacteria 10467
125 Ga0373955_0006070 3300035172 Bacteria 5484
126 Ga0373961_0000571 3300035241 Bacteria 13919
127 Ga0373962_0003603 3300035242 Bacteria 3723
128 Ga0316574_0004496 3300035398 Bacteria 7317
129 Ga0373931_0017210 3300035691 Bacteria 3570
130 Ga0373937_0007228 3300036401 Bacteria 9606
131 Ga0400484_24899 3300038725 Bacteria 3104
132 Ga0400490_49690 3300038726 Bacteria 4410
133 Ga0436365_1558596 3300039437 Bacteria 10408
134 Ga0439435_0000507 3300042436 Bacteria 6218
135 Ga0451577_0020915 3300042876 Bacteria 5999
136 Ga0451577_0064335 3300042876 Bacteria 3271
137 Ga0453683_0006397 3300044673 Bacteria 8084
138 Ga0453683_0069259 3300044673 Bacteria 2206
139 Ga0453684_0000022 3300044712 Bacteria 860785
140 Ga0453684_0000939 3300044712 Bacteria 96146
141 Ga0453684_0003002 3300044712 Bacteria 39261
142 Ga0453684_0007462 3300044712 Bacteria 20080
143 Ga0453684_0008761 3300044712 Bacteria 17964
144 Ga0453684_0008786 3300044712 Bacteria 17930
145 Ga0451576_0031545 3300045051 Bacteria 5648
146 Ga0451576_0046240 3300045051 Bacteria 4583
147 Ga0451576_0056898 3300045051 Bacteria 4088
148 Ga0451576_0160424 3300045051 Bacteria 2346
149 Ga0495608_0027177 3300046511 Bacteria 3894
150 Ga0495628_0001604 3300046516 Bacteria 20736
151 Ga0495680_0028432 3300047322 Bacteria 4584
152 Ga0496106_0096609 3300048909 Bacteria 2287
153 Ga0496112_0010596 3300048915 Bacteria 8375
154 Ga0496115_0033679 3300048918 Bacteria 4046
155 Ga0501034_0027792 3300049571 Bacteria 5752
156 Ga0501038_0083549 3300049574 Bacteria 2688
157 Ga0501038_0102348 3300049574 Bacteria 2383
158 Ga0501040_0010836 3300049576 Bacteria 5959
159 Ga0501041_0017208 3300049577 Bacteria 4302
160 Ga0501042_0008812 3300049578 Bacteria 6688
161 Ga0501042_0029768 3300049578 Bacteria 3851
162 Ga0501047_0039458 3300049581 Bacteria 4566
163 Ga0501070_0007967 3300049586 Bacteria 8973
164 Ga0501072_0034602 3300049588 Bacteria 3960
165 Ga0501075_0021244 3300049591 Bacteria 4731
166 Ga0501076_0017362 3300049592 Bacteria 5469
167 Ga0501076_0047686 3300049592 Bacteria 3387
168 Ga0501045_0102885 3300049824 Bacteria 2115
169 nmdc:mga05p37_105504_c1 3300050507 Bacteria 3466
170 nmdc:mga05p37_30114_c1 3300050507 Bacteria 6622
171 nmdc:mga09592_15574_c1 3300050508 Bacteria 6213
172 nmdc:mga09592_4033_c1 3300050508 Bacteria 11849
173 nmdc:mga09592_78806_c1 3300050508 Bacteria 2804
174 nmdc:mga0qj67_1620_c1 3300050509 Bacteria 15833
175 nmdc:mga06r32_4330_c1 3300050510 Bacteria 12708
176 nmdc:mga08y16_10274_c1 3300050511 Bacteria 9823
177 nmdc:mga08y16_144146_c1 3300050511 Bacteria 2476
178 nmdc:mga08y16_18946_c2 3300050511 Bacteria 6736
179 nmdc:mga08y16_20419_c1 3300050511 Bacteria 6992
180 nmdc:mga08y16_55_c1 3300050511 Bacteria 102176
181 nmdc:mga0n895_81_c1 3300050512 Bacteria 54736
182 nmdc:mga0rr50_1_c1 3300050513 Bacteria 558123
183 nmdc:mga0rr50_2883_c1 3300050513 Bacteria 9808
184 nmdc:mga08x19_21825_c1 3300050514 Bacteria 3957
185 nmdc:mga08x19_265_c1 3300050514 Bacteria 39740
186 nmdc:mga08x19_926_c1 3300050514 Bacteria 18484
187 Ga0495595_0004465 3300053084 Bacteria 5632
188 Ga0500616_0003775 3300053153 Bacteria 11272
189 Ga0500616_0017179 3300053153 Bacteria 4109
190 Ga0501084_0047762 3300054114 Bacteria 3585
191 Ga0590071_001857 3300059421 Bacteria 5446
192 Ga0590074_000785 3300059423 Bacteria 4879
193 Ga0590075_000331 3300059424 Bacteria 13179
194 Ga0590077_001467 3300059426 Bacteria 5513
195 Ga0530510_0006760 3300061734 Bacteria 7993
196 Ga0495676_0049794
197 Ga0065712_10067837
198 Ga0065715_10119143
199 Ga0065707_10002122
200 Ga0070670_100001689
201 Ga0070670_100003517
202 Ga0070666_10015471
203 Ga0068868_100006348
204 Ga0070689_100001389
205 Ga0070689_100002616
206 Ga0070689_100059242
207 Ga0070687_100004066
208 Ga0070669_100013714
209 Ga0070675_100005223
210 Ga0070675_100053250
211 Ga0070673_100014010
212 Ga0070688_100000593
213 Ga0070688_100022528
214 Ga0070698_100077846
215 Ga0070699_100061975
216 Ga0070679_100159072
217 Ga0068853_100005805
218 Ga0070672_100020459
219 Ga0070686_100004355
220 Ga0068855_100055762
221 Ga0068854_100123628
222 Ga0068859_100034282
223 Ga0068859_100083152
224 Ga0068864_100018190
225 Ga0068864_100099866
226 Ga0068863_100022059
227 Ga0068863_100048055
228 Ga0068863_100099297
229 Ga0068860_100001838
230 Ga0068871_100065446
231 Ga0075428_100003595
232 Ga0075430_100007720
233 Ga0075430_100012909
234 Ga0075430_100072894
235 Ga0075434_100000019
236 Ga0075434_100063543
237 Ga0075429_100000262
238 Ga0075429_100007790
239 Ga0075429_100017982
240 Ga0075436_100000160
241 Ga0075436_100004835
242 Ga0097620_100034284
243 Ga0097620_100083154
244 Ga0075435_100000041
245 Ga0075435_100001039
246 Ga0075435_100062208
247 Ga0111539_10000080
248 Ga0111539_10001003
249 Ga0111539_10009036
250 Ga0111539_10023354
251 Ga0111539_10113974
252 Ga0105245_10020877
253 Ga0114129_10015059
254 Ga0114129_10056464
255 Ga0105248_10015104
256 Ga0105249_10108756
257 Ga0157373_10020151
258 Ga0157369_10066660
259 Ga0157374_10005953
260 Ga0157374_10013862
261 Ga0163163_10105943
262 Ga0157380_10077439
263 Ga0157380_10128974
264 Ga0182008_10020145
265 Ga0157377_10018366
266 Ga0157376_10012827
267 Ga0213876_10030310
268 Ga0207680_10027950
269 Ga0207693_10005854
270 Ga0207663_10032592
271 Ga0207662_10000189
272 Ga0207662_10029440
273 Ga0207652_10163359
274 Ga0207650_10062020
275 Ga0207659_10003395
276 Ga0207659_10077503
277 Ga0207690_10028184
278 Ga0207670_10000370
279 Ga0207670_10003115
280 Ga0207670_10027998
281 Ga0207665_10082029
282 Ga0207691_10006367
283 Ga0207691_10050608
284 Ga0207679_10018082
285 Ga0207679_10071098
286 Ga0207677_10004685
287 Ga0207639_10084029
288 Ga0207641_10042716
289 Ga0207641_10054552
290 Ga0207676_10038610
291 Ga0207675_100056869
292 Ga0207675_100084262
293 Ga0207683_10038054
294 Ga0207428_10003296
295 Ga0207428_10011372
296 Ga0207428_10014110
297 Ga0268264_10005311
298 Ga0265332_10000162
299 Ga0265328_10002073
300 Ga0265325_10003672
301 Ga0265329_10006706
302 Ga0265331_10000034
303 Ga0265327_10005833
304 Ga0265316_10025225
305 Ga0265314_10000883
306 Ga0265314_10012669
307 Ga0265314_10040309
308 Ga0307407_10001867
309 Ga0307411_10006649
310 Ga0373930_0001589
311 Ga0373950_0006045
312 Ga0373928_0004549
313 Ga0373929_0002027
314 Ga0373934_0001947
315 Ga0373932_0000424
316 Ga0373941_0002558
317 Ga0373945_0023579
318 Ga0373956_0011021
319 Ga0373960_0000225
320 Ga0373955_0006070
321 Ga0373961_0000571
322 Ga0373962_0003603
323 Ga0316574_0004496
324 Ga0373931_0017210
325 Ga0373937_0007228
326 Ga0400484_24899
327 Ga0400490_49690
328 Ga0436365_1558596
329 Ga0439435_0000507
330 Ga0451577_0020915
331 Ga0451577_0064335
332 Ga0453683_0006397
333 Ga0453683_0069259
334 Ga0453684_0000022
335 Ga0453684_0000939
336 Ga0453684_0003002
337 Ga0453684_0007462
338 Ga0453684_0008761
339 Ga0453684_0008786
340 Ga0451576_0031545
341 Ga0451576_0046240
342 Ga0451576_0056898
343 Ga0451576_0160424
344 Ga0495608_0027177
345 Ga0495628_0001604
346 Ga0495680_0028432
347 Ga0496106_0096609
348 Ga0496112_0010596
349 Ga0496115_0033679
350 Ga0501034_0027792
351 Ga0501038_0083549
352 Ga0501038_0102348
353 Ga0501040_0010836
354 Ga0501041_0017208
355 Ga0501042_0008812
356 Ga0501042_0029768
357 Ga0501047_0039458
358 Ga0501070_0007967
359 Ga0501072_0034602
360 Ga0501075_0021244
361 Ga0501076_0017362
362 Ga0501076_0047686
363 Ga0501045_0102885
364 nmdc:mga05p37_105504_c1
365 nmdc:mga05p37_30114_c1
366 nmdc:mga09592_15574_c1
367 nmdc:mga09592_4033_c1
368 nmdc:mga09592_78806_c1
369 nmdc:mga0qj67_1620_c1
370 nmdc:mga06r32_4330_c1
371 nmdc:mga08y16_10274_c1
372 nmdc:mga08y16_144146_c1
373 nmdc:mga08y16_18946_c2
374 nmdc:mga08y16_20419_c1
375 nmdc:mga08y16_55_c1
376 nmdc:mga0n895_81_c1
377 nmdc:mga0rr50_1_c1
378 nmdc:mga0rr50_2883_c1
379 nmdc:mga08x19_21825_c1
380 nmdc:mga08x19_265_c1
381 nmdc:mga08x19_926_c1
382 Ga0495595_0004465
383 Ga0500616_0003775
384 Ga0500616_0017179
385 Ga0501084_0047762
386 Ga0590071_001857
387 Ga0590074_000785
388 Ga0590075_000331
389 Ga0590077_001467
390 Ga0530510_0006760

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03950

tRNA-synt_1c_C

tRNA synthetases class I (E and Q), anti-codon binding domain

406

507

0.98

PF00749

tRNA-synt_1c

tRNA synthetases class I (E and Q), catalytic domain

54

404

0.97

PF20974

tRNA-synt_1c_C2

tRNA synthetases class I (E and Q), anti-codon binding domain

524

600

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jyz-assembly1.cif.gz_A crystal structure of e. coli glutaminyl-trna synthetase bound to atp and native trna(gln) containing the cmnm5s2u34 anticodon wobble base 0.9295 13 534
4jxx-assembly1.cif.gz_A crystal structure of e coli e. coli glutaminyl-trna synthetase bound to trna(gln)(cug) and atp from novel cryostabilization conditions 0.9242 13 534
4jxz-assembly1.cif.gz_A structure of e. coli glutaminyl-trna synthetase bound to atp and a trna(gln) acceptor containing a uug anticodon 0.9227 13 534
5bnz-assembly1.cif.gz_A crystal structure of glutamine-trna ligase /glutaminyl-trna synthetase (glnrs) from pseudomonas aeruginosa 0.9191 15 534
1qrs-assembly1.cif.gz_A glutaminyl-trna synthetase mutant d235n complexed with glutamine transfer rna 0.9138 14 533
ID Description Score Start End Superfamily
1gtrA03 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.9903 245 321 1.10.1160.10
af_A4I608_275_352_1.10.1160.10 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.963 245 320 1.10.1160.10
af_F1QP23_424_501_1.10.1160.10 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.9614 245 321 1.10.1160.10
1nylA01 Mainly Beta;Beta Barrel;Ribosomal Protein L25; Chain P;Ribosomal Protein L25; Chain P 0.9604 333 449 2.40.240.10
2hz7A03 Mainly Alpha;Orthogonal Bundle;Glutamyl-tRNA Synthetase; domain 2;Glutamyl-trna Synthetase; Domain 2 0.9555 245 323 1.10.1160.10
ID Description Score Start End GO Terms
AF-A0A3D2U6D0-F1-model_v4 Glutamine--tRNA ligase (EC 6.1.1.18) 0.9948 285 411 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A3D2DPR0-F1-model_v4 Glutamine--tRNA ligase (EC 6.1.1.18) 0.994 83 167 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A3C0CVA7-F1-model_v4 Glutamine--tRNA ligase (EC 6.1.1.18) 0.9918 82 175 GO:0004819
GO:0005524
GO:0005829
GO:0006425
AF-A0A351EAC5-F1-model_v4 deleted 0.9877 314 412
AF-A0A3D0WQF6-F1-model_v4 Glutamine--tRNA ligase (EC 6.1.1.18) 0.9858 250 457 GO:0004819
GO:0005524
GO:0005829
GO:0006425

Map