F299408

General Info

Members Datasets Scaffolds Average Seq Length
194 151 388 268

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2945956166|2945956837
Length 327
Sequence DRPPVQEPVAQEPAAGEPEAQAPAGQEPDGHGPAAREPAVQRLAVQNSPAPGTRRRPSSGSLLASELKQLFRRRRTQAMLLALAAIPVVIAVVVHVSSAVPPGRGPAFLDRISQNGLFVAVTAMLVSVPLFLPLTIGVVAGDTIAGEAGLGTLRYLLVAPAGRVRLLLVKYAGAAVFCLSAPLAVALAGAGIGWVLFPVGPVALLSGDLVEPDEALVRMLLIAAYQAVSLLGLSAIGLFLSTLTDVPVGAMAATIVLSVVSQVLDQLPQLEWLHPWLFTHNWFGFADLLRQPIGWDSFADNALLQAGYIAVFGALAYGRFVSKDVLS

Samples

Sample ID Description Type Environment
1 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
13 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
14 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
15 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
16 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
17 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
18 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
19 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
20 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
21 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
22 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
23 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
24 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
25 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
26 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
27 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
35 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
36 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
37 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
38 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
39 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
40 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
41 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
42 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
43 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
44 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
45 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
46 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
47 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
48 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
49 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
50 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
51 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
52 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
53 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
54 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
55 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
56 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
57 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
58 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
59 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
60 3300042121 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 Metagenome Rhizosphere
61 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
62 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
63 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
64 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
65 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
66 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
67 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
68 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
69 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
70 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
71 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
72 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
73 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
74 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
75 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
76 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
77 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
78 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
79 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
80 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
81 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
82 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
83 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
84 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
85 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
86 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
87 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
88 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
89 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
90 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
91 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
92 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
93 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
94 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
95 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
96 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
99 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
100 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
105 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
106 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
107 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
108 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
109 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
110 2643221616 Leifsonia sp. Root227 Isolate Unclassified
111 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
112 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
113 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
114 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
115 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
116 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
117 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
118 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
119 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
120 2808606372 Agromyces sp. 23-23 Isolate Unclassified
121 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
122 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
123 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
124 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
125 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
126 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
127 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
128 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
129 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
130 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
131 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
132 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
133 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
134 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
135 2928153084 Leifsonia sp. 563 Isolate Unclassified
136 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
137 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
138 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
139 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
140 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
141 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
142 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
143 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
144 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
145 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
146 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
147 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
148 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
149 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
150 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
151 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 77.84
Metatranscriptomes 0
Isolates 22.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.7
Nodule 0
Rhizoplane 7.22
Rhizosphere 72.68
Stem 0
Stem Tuber 0.52
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1001729 3300002772 Bacteria 4391
2 JGI25152J39213_1000124 3300002773 Bacteria 52334
3 JGI25165J46597_1000004 3300003214 Bacteria 667510
4 Ga0065714_10079034 3300005288 Bacteria 2548
5 Ga0070676_10017551 3300005328 Bacteria 3959
6 Ga0070668_100014447 3300005347 Bacteria 5901
7 Ga0070675_100064771 3300005354 Bacteria 3021
8 Ga0070671_100005327 3300005355 Bacteria 10263
9 Ga0070673_100004872 3300005364 Bacteria 8546
10 Ga0070667_100068582 3300005367 Bacteria 3017
11 Ga0070678_100315293 3300005456 Bacteria 1334
12 Ga0105251_10005191 3300009011 Bacteria 8594
13 Ga0105244_10105897 3300009036 Bacteria 1372
14 Ga0105245_10032295 3300009098 Bacteria 4635
15 Ga0105247_10260044 3300009101 Bacteria 1190
16 Ga0105243_10376088 3300009148 Bacteria 1312
17 Ga0105248_10181839 3300009177 Bacteria 2369
18 Ga0105246_10060596 3300011119 Bacteria 2630
19 Ga0105246_10344936 3300011119 Bacteria 1218
20 Ga0157373_10019010 3300013100 Bacteria 5001
21 Ga0157369_10109265 3300013105 Bacteria 2941
22 Ga0157369_10445677 3300013105 Bacteria 1341
23 Ga0163162_10114254 3300013306 Bacteria 2799
24 Ga0207427_100052 3300025231 Bacteria 218228
25 Ga0209437_100893 3300025233 Bacteria 12012
26 Ga0209129_1000067 3300025258 Bacteria 219974
27 Ga0209233_1000001 3300025261 Bacteria 2992747
28 Ga0209025_1000971 3300025294 Bacteria 42988
29 Ga0207697_10000923 3300025315 Bacteria 16587
30 Ga0207682_10000721 3300025893 Bacteria 15331
31 Ga0207645_10001044 3300025907 Bacteria 22915
32 Ga0207687_10061193 3300025927 Bacteria 2658
33 Ga0207709_10033433 3300025935 Bacteria 3020
34 Ga0207691_10000652 3300025940 Bacteria 34259
35 Ga0207683_10001443 3300026121 Bacteria 21514
36 Ga0307408_100019257 3300031548 Bacteria 4593
37 Ga0307408_100057251 3300031548 Bacteria 2829
38 Ga0307408_100067254 3300031548 Bacteria 2634
39 Ga0307408_100097490 3300031548 Bacteria 2233
40 Ga0307408_100127518 3300031548 Bacteria 1981
41 Ga0307408_100270063 3300031548 Bacteria 1411
42 Ga0307405_10027247 3300031731 Bacteria 3310
43 Ga0307405_10040063 3300031731 Bacteria 2835
44 Ga0307405_10068048 3300031731 Bacteria 2277
45 Ga0307405_10189993 3300031731 Bacteria 1482
46 Ga0307413_10003787 3300031824 Bacteria 6448
47 Ga0307413_10050768 3300031824 Bacteria 2494
48 Ga0307413_10081156 3300031824 Bacteria 2078
49 Ga0307410_10044078 3300031852 Bacteria 2960
50 Ga0307410_10155464 3300031852 Bacteria 1707
51 Ga0307410_10191026 3300031852 Bacteria 1557
52 Ga0307406_10031675 3300031901 Bacteria 3221
53 Ga0307406_10054790 3300031901 Bacteria 2546
54 Ga0307406_10122277 3300031901 Bacteria 1812
55 Ga0307406_10293679 3300031901 Bacteria 1245
56 Ga0307407_10037583 3300031903 Bacteria 2676
57 Ga0307407_10066169 3300031903 Bacteria 2131
58 Ga0307407_10075614 3300031903 Bacteria 2019
59 Ga0307407_10120403 3300031903 Bacteria 1663
60 Ga0307412_10000590 3300031911 Bacteria 21490
61 Ga0307412_10003599 3300031911 Bacteria 8605
62 Ga0307412_10030979 3300031911 Bacteria 3373
63 Ga0307412_10057427 3300031911 Bacteria 2598
64 Ga0307412_10163524 3300031911 Bacteria 1657
65 Ga0307409_100012212 3300031995 Bacteria 5462
66 Ga0307409_100147188 3300031995 Bacteria 2038
67 Ga0307409_100197530 3300031995 Bacteria 1796
68 Ga0307416_100022126 3300032002 Bacteria 4581
69 Ga0307416_100070119 3300032002 Bacteria 2904
70 Ga0307416_100154727 3300032002 Bacteria 2109
71 Ga0307416_100221524 3300032002 Bacteria 1815
72 Ga0307414_10026443 3300032004 Bacteria 3735
73 Ga0307414_10547041 3300032004 Bacteria 1031
74 Ga0307415_100073364 3300032126 Bacteria 2414
75 Ga0395899_0009713 3300037312 Bacteria 7385
76 Ga0395900_0022945 3300037418 Bacteria 6386
77 Ga0395898_0105358 3300037466 Bacteria 2704
78 Ga0395901_0088279 3300038443 Bacteria 3243
79 Ga0395901_0256405 3300038443 Bacteria 1821
80 Ga0439436_0003670 3300041404 Bacteria 4679
81 Ga0439438_015483 3300041405 Bacteria 2243
82 Ga0439439_0000026 3300041406 Bacteria 19793
83 Ga0451797_1342009 3300041453 Bacteria 1225
84 Ga0439433_0000029 3300041999 Bacteria 17883
85 Ga0439442_004590 3300042002 Bacteria 2744
86 Ga0439442_010924 3300042002 Bacteria 1844
87 Ga0439432_001598 3300042006 Bacteria 8487
88 Ga0439449_0012201 3300042007 Bacteria 3231
89 Ga0439452_019439 3300042010 Bacteria 1795
90 Ga0439457_007272 3300042014 Bacteria 2666
91 Ga0439462_0000103 3300042015 Bacteria 13216
92 Ga0450919_002982 3300042121 Bacteria 2163
93 Ga0450920_015702 3300042122 Bacteria 1441
94 Ga0450907_005859 3300042146 Bacteria 2063
95 Ga0439446_0060348 3300042156 Bacteria 1145
96 Ga0439434_0000522 3300042435 Bacteria 10973
97 Ga0450918_001501 3300042531 Bacteria 4615
98 Ga0466961_0114862 3300044693 Bacteria 1692
99 Ga0466970_0014436 3300044765 Bacteria 4056
100 Ga0466959_0148474 3300045049 Bacteria 1654
101 Ga0466958_0240016 3300045836 Bacteria 1158
102 Ga0495580_0007396 3300046472 Bacteria 8832
103 Ga0495639_0003252 3300046475 Bacteria 7056
104 Ga0495662_0030838 3300046476 Bacteria 2588
105 Ga0495664_0040099 3300046477 Bacteria 2768
106 Ga0495594_0033591 3300046499 Bacteria 2790
107 Ga0495642_0023785 3300046528 Bacteria 2420
108 Ga0495665_0001891 3300046531 Bacteria 11287
109 Ga0495586_0007607 3300046535 Bacteria 5783
110 Ga0495587_0011612 3300046536 Bacteria 5577
111 Ga0495645_0008434 3300046543 Bacteria 7199
112 Ga0495645_0059357 3300046543 Bacteria 2774
113 Ga0495667_0014340 3300046559 Bacteria 5353
114 Ga0495656_0052167 3300046615 Bacteria 1753
115 Ga0495634_0095401 3300046642 Bacteria 1927
116 Ga0495588_0004629 3300046674 Bacteria 6073
117 Ga0495657_0083968 3300046675 Bacteria 2055
118 Ga0495670_0067619 3300046691 Bacteria 1804
119 Ga0495600_0002610 3300046809 Bacteria 10390
120 Ga0495581_0002073 3300047315 Bacteria 11275
121 Ga0495581_0008294 3300047315 Bacteria 6022
122 Ga0495581_0330201 3300047315 Bacteria 890
123 Ga0495675_0021609 3300047444 Bacteria 4099
124 Ga0496100_0087975 3300048903 Bacteria 2113
125 Ga0496101_0002429 3300048904 Bacteria 11446
126 Ga0496101_0209263 3300048904 Bacteria 1510
127 Ga0496102_0293824 3300048905 Bacteria 1531
128 Ga0496103_0052707 3300048906 Bacteria 2520
129 Ga0496106_0007607 3300048909 Bacteria 8015
130 Ga0496106_0064855 3300048909 Bacteria 2779
131 Ga0496107_0036953 3300048910 Bacteria 3504
132 Ga0496109_0135777 3300048912 Bacteria 2298
133 Ga0496111_0025121 3300048914 Bacteria 4201
134 Ga0496112_0188136 3300048915 Bacteria 2027
135 Ga0496112_0393101 3300048915 Bacteria 1327
136 Ga0496113_0064582 3300048916 Bacteria 2768
137 Ga0496117_0000071 3300048920 Bacteria 242170
138 Ga0496117_0003826 3300048920 Bacteria 17111
139 Ga0496118_0000290 3300048921 Bacteria 87438
140 Ga0496119_0006128 3300048922 Bacteria 11253
141 Ga0496122_0025617 3300048925 Bacteria 5116
142 Ga0496122_0063429 3300048925 Bacteria 2697
143 Ga0496123_0006310 3300048926 Bacteria 11532
144 Ga0496123_0018087 3300048926 Bacteria 5633
145 Ga0496124_0000040 3300048927 Bacteria 307061
146 Ga0500650_0021709 3300053098 Bacteria 2832
147 Ga0500559_0001378 3300053136 Bacteria 13874
148 Ga0500559_0019536 3300053136 Bacteria 2863
149 Ga0500559_0123433 3300053136 Bacteria 1205
150 Ga0500577_0050278 3300053142 Bacteria 1562
151 Ga0466962_0098921 3300061719 Bacteria 1400
152 2945956837 2945956166 Bacteria 5110334
153 2644096157 2643221616 Bacteria 4066575
154 2644183734 2643221632 Bacteria 3406696
155 2644384023 2643221669 Bacteria 3611286
156 2691512487 2690315906 Bacteria 4517044
157 2775657746 2775506735 Bacteria 4556596
158 2808829736 2808606357 Bacteria 4466944
159 2808850916 2808606360 Bacteria 4404006
160 2808876572 2808606366 Bacteria 4415912
161 2808893991 2808606370 Bacteria 4942454
162 2808898069 2808606371 Bacteria 4251511
163 2808900323 2808606372 Bacteria 4649509
164 2810365197 2808606700 Bacteria 3482157
165 2812318561 2811994871 Bacteria 4497550
166 2844853305 2844852863 Bacteria 3849151
167 2862996229 2862993130 Bacteria 3860849
168 2884765522 2884763398 Bacteria 4091164
169 2895662252 2895660088 Bacteria 3782833
170 2904498313 2904497146 Bacteria 4731781
171 2904777673 2904776348 Bacteria 4658726
172 2905928438 2905926851 Bacteria 4423176
173 2909076659 2909074476 Bacteria 3436050
174 2919035045 2919034639 Bacteria 4763403
175 2919039272 2919039151 Bacteria 3391018
176 2919391908 2919391150 Bacteria 4884741
177 2919540502 2919538618 Bacteria 4677069
178 2928156454 2928153084 Bacteria 4020257
179 2933422458 2933418574 Bacteria 4476724
180 2939661555 2939660829 Bacteria 3784848
181 2939675186 2939674588 Bacteria 4844420
182 2945916321 2945916053 Bacteria 4555517
183 2945923540 2945920336 Bacteria 4501603
184 2945944796 2945941187 Bacteria 4682474
185 2946003605 2946003308 Bacteria 3857229
186 2946040735 2946037020 Bacteria 4900426
187 2954001977 2953998280 Bacteria 4812144
188 2964328873 2964326757 Bacteria 3290868
189 2966923389 2966921586 Bacteria 3092803
190 2966925732 2966924647 Bacteria 3268643
191 2974304273 2974302888 Bacteria 4369871
192 8004028328 8004025490 Bacteria 4327753
193 8056038577 8056037122 Bacteria 3854319
194 8057346369 8057345674 Bacteria 4160394
195 JGI25164J39214_1001729
196 JGI25152J39213_1000124
197 JGI25165J46597_1000004
198 Ga0065714_10079034
199 Ga0070676_10017551
200 Ga0070668_100014447
201 Ga0070675_100064771
202 Ga0070671_100005327
203 Ga0070673_100004872
204 Ga0070667_100068582
205 Ga0070678_100315293
206 Ga0105251_10005191
207 Ga0105244_10105897
208 Ga0105245_10032295
209 Ga0105247_10260044
210 Ga0105243_10376088
211 Ga0105248_10181839
212 Ga0105246_10060596
213 Ga0105246_10344936
214 Ga0157373_10019010
215 Ga0157369_10109265
216 Ga0157369_10445677
217 Ga0163162_10114254
218 Ga0207427_100052
219 Ga0209437_100893
220 Ga0209129_1000067
221 Ga0209233_1000001
222 Ga0209025_1000971
223 Ga0207697_10000923
224 Ga0207682_10000721
225 Ga0207645_10001044
226 Ga0207687_10061193
227 Ga0207709_10033433
228 Ga0207691_10000652
229 Ga0207683_10001443
230 Ga0307408_100019257
231 Ga0307408_100057251
232 Ga0307408_100067254
233 Ga0307408_100097490
234 Ga0307408_100127518
235 Ga0307408_100270063
236 Ga0307405_10027247
237 Ga0307405_10040063
238 Ga0307405_10068048
239 Ga0307405_10189993
240 Ga0307413_10003787
241 Ga0307413_10050768
242 Ga0307413_10081156
243 Ga0307410_10044078
244 Ga0307410_10155464
245 Ga0307410_10191026
246 Ga0307406_10031675
247 Ga0307406_10054790
248 Ga0307406_10122277
249 Ga0307406_10293679
250 Ga0307407_10037583
251 Ga0307407_10066169
252 Ga0307407_10075614
253 Ga0307407_10120403
254 Ga0307412_10000590
255 Ga0307412_10003599
256 Ga0307412_10030979
257 Ga0307412_10057427
258 Ga0307412_10163524
259 Ga0307409_100012212
260 Ga0307409_100147188
261 Ga0307409_100197530
262 Ga0307416_100022126
263 Ga0307416_100070119
264 Ga0307416_100154727
265 Ga0307416_100221524
266 Ga0307414_10026443
267 Ga0307414_10547041
268 Ga0307415_100073364
269 Ga0395899_0009713
270 Ga0395900_0022945
271 Ga0395898_0105358
272 Ga0395901_0088279
273 Ga0395901_0256405
274 Ga0439436_0003670
275 Ga0439438_015483
276 Ga0439439_0000026
277 Ga0451797_1342009
278 Ga0439433_0000029
279 Ga0439442_004590
280 Ga0439442_010924
281 Ga0439432_001598
282 Ga0439449_0012201
283 Ga0439452_019439
284 Ga0439457_007272
285 Ga0439462_0000103
286 Ga0450919_002982
287 Ga0450920_015702
288 Ga0450907_005859
289 Ga0439446_0060348
290 Ga0439434_0000522
291 Ga0450918_001501
292 Ga0466961_0114862
293 Ga0466970_0014436
294 Ga0466959_0148474
295 Ga0466958_0240016
296 Ga0495580_0007396
297 Ga0495639_0003252
298 Ga0495662_0030838
299 Ga0495664_0040099
300 Ga0495594_0033591
301 Ga0495642_0023785
302 Ga0495665_0001891
303 Ga0495586_0007607
304 Ga0495587_0011612
305 Ga0495645_0008434
306 Ga0495645_0059357
307 Ga0495667_0014340
308 Ga0495656_0052167
309 Ga0495634_0095401
310 Ga0495588_0004629
311 Ga0495657_0083968
312 Ga0495670_0067619
313 Ga0495600_0002610
314 Ga0495581_0002073
315 Ga0495581_0008294
316 Ga0495581_0330201
317 Ga0495675_0021609
318 Ga0496100_0087975
319 Ga0496101_0002429
320 Ga0496101_0209263
321 Ga0496102_0293824
322 Ga0496103_0052707
323 Ga0496106_0007607
324 Ga0496106_0064855
325 Ga0496107_0036953
326 Ga0496109_0135777
327 Ga0496111_0025121
328 Ga0496112_0188136
329 Ga0496112_0393101
330 Ga0496113_0064582
331 Ga0496117_0000071
332 Ga0496117_0003826
333 Ga0496118_0000290
334 Ga0496119_0006128
335 Ga0496122_0025617
336 Ga0496122_0063429
337 Ga0496123_0006310
338 Ga0496123_0018087
339 Ga0496124_0000040
340 Ga0500650_0021709
341 Ga0500559_0001378
342 Ga0500559_0019536
343 Ga0500559_0123433
344 Ga0500577_0050278
345 Ga0466962_0098921
346 2945956837
347 2644096157
348 2644183734
349 2644384023
350 2691512487
351 2775657746
352 2808829736
353 2808850916
354 2808876572
355 2808893991
356 2808898069
357 2808900323
358 2810365197
359 2812318561
360 2844853305
361 2862996229
362 2884765522
363 2895662252
364 2904498313
365 2904777673
366 2905928438
367 2909076659
368 2919035045
369 2919039272
370 2919391908
371 2919540502
372 2928156454
373 2933422458
374 2939661555
375 2939675186
376 2945916321
377 2945923540
378 2945944796
379 2946003605
380 2946040735
381 2954001977
382 2964328873
383 2966923389
384 2966925732
385 2974304273
386 8004028328
387 8056038577
388 8057346369

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12679

ABC2_membrane_2

ABC-2 family transporter protein

61

325

0.74

PF12730

ABC2_membrane_4

ABC-2 family transporter protein

62

261

0.62

Structural Annotation

Top 5 Hits

ID Description Score Start End
6xjh-assembly1.cif.gz_A pmtcd abc exporter without the basket domain at c2 symmetry 0.5975 26 276
7r87-assembly1.cif.gz_B the structure of human abcg5-wt/abcg8-i419e 0.5892 58 279
6xjh-assembly1.cif.gz_A pmtcd abc exporter without the basket domain at c2 symmetry 0.5769 26 276
7o17-assembly1.cif.gz_E abc transporter nosdfy e154q, atp-bound in lipid nanodisc 0.5667 26 275
7znq-assembly1.cif.gz_y abc transporter complex nosdfyl in gdn 0.5653 26 275
ID Description Score Start End Superfamily
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6073 69 271 3.40.1710.10
af_Q9VMM9_322_706_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.5547 69 268 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.4517 69 271 3.40.1710.10
af_X1WEU3_262_422_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.4325 61 214 1.20.1250.20
af_A0A0R0K6H1_306_469_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.4177 32 216 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A0K8QEV1-F1-model_v4 ABC transporter permease 0.957 77 279 GO:0005886
GO:0140359
AF-A0A166HEW2-F1-model_v4 ABC-2 family transporter protein 0.9499 115 279 GO:0016020
AF-A0A0K8QEV1-F1-model_v4 ABC transporter permease 0.948 77 279 GO:0005886
GO:0140359
AF-S3AQH0-F1-model_v4 ABC transporter permease 0.9282 135 276 GO:0016020
AF-A0A536LXN7-F1-model_v4 ABC transporter permease 0.9265 67 279 GO:0016020

Map