F299266

General Info

Members Datasets Scaffolds Average Seq Length
194 161 175 311

Family's Representative Sequence

Representative Sequence 3300049584|Ga0501068_0023160|Ga0501068_0023160_514_1575
Length 353
Sequence LSIASTGWSRRITFKTDQSRQQKVNIVTKKHLGAALAAASLVLSISACSDDASSVAADGGSNDSDKPYIAIVSKGFQHQFWQAVKKGAEEEAAKEGVTITFEGPATEADIEDQMTMLTNALAKKPDAIGFAALDSQAAAPVLEQAKSEDIPVIAFDSGVDSDIPLTTAATDNLAAAGEAAEHMAELVGGKGKVALIVHDQTSLTGQQRRDGFIEWMKANAPDIELLPVQYGDGDQAKSADIAKSIIAANPDIKGIYGSNEGSAIGAVKGIEESGKKGLVVIGFDSGQAQIDAINAGIEAGAITQNPVGMGAAVVEAAVMAINGETLETTIDTGYYWYDKSNIDDPEIQAVLYQ

Samples

Sample ID Description Type Environment
1 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
2 2643221572 Leifsonia sp. Root60 Isolate Unclassified
3 2643221619 Agromyces sp. Root81 Isolate Unclassified
4 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
5 2738541317 Rhizobium halophytocola DSM 21600 Isolate Unclassified
6 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
7 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
8 2808606384 Burkholderia sp. SJZ089 Isolate Rhizosphere
9 2808606390 Burkholderia sp. SJZ115 Isolate Rhizosphere
10 2808606391 Burkholderia sp. SJZ091 Isolate Rhizosphere
11 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
12 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
13 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
14 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
15 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
16 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
17 2913308742 Rhizobium halophytocola DSM 21600 Isolate Unclassified
18 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
19 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
20 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
21 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
22 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
23 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
24 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
25 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
26 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
27 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
28 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
29 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
30 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
31 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
32 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
33 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
34 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
40 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
41 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
42 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
43 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
44 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
45 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
46 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
47 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
48 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
49 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
50 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
51 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
52 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
53 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
54 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
57 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
58 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
59 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
60 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
66 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
67 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
68 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
69 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
70 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
92 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
95 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
96 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
97 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
98 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
99 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
100 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
101 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
102 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
103 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
104 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
105 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
106 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
110 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
111 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
112 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
113 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
114 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
115 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
116 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
117 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
118 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
119 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
123 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
124 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
125 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
126 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
127 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
132 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
138 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
139 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
140 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
141 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
142 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
143 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
144 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
145 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
146 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
147 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
148 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
149 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
150 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
151 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
152 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
153 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
154 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
155 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
156 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
157 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
158 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
159 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
160 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
161 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.6
Metatranscriptomes 3.61
Isolates 9.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.7
Nodule 0
Rhizoplane 7.73
Rhizosphere 72.16
Stem 0
Stem Tuber 0
Unclassified 13.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10054237 3300003316 Bacteria 2284
2 rootH1_10078847 3300003323 Bacteria 2297
3 Ga0058863_10070715 3300004799 Bacteria 1435
4 Ga0058861_11776299 3300004800 Bacteria 2124
5 Ga0070683_100140770 3300005329 Bacteria 2286
6 Ga0068869_100061037 3300005334 Bacteria 2764
7 Ga0068868_100204246 3300005338 Bacteria 1649
8 Ga0070668_100179551 3300005347 Bacteria 1728
9 Ga0070668_100237729 3300005347 Bacteria 1508
10 Ga0070669_100183964 3300005353 Bacteria 1636
11 Ga0070675_100051984 3300005354 Bacteria 3368
12 Ga0070711_100169048 3300005439 Bacteria 1665
13 Ga0070663_100301011 3300005455 Bacteria 1284
14 Ga0070684_100197104 3300005535 Bacteria 1834
15 Ga0070664_100143549 3300005564 Bacteria 2104
16 Ga0070664_100200530 3300005564 Bacteria 1780
17 Ga0068857_100326513 3300005577 Bacteria 1418
18 Ga0068864_100018782 3300005618 Bacteria 5778
19 Ga0068863_100034148 3300005841 Bacteria 4845
20 Ga0068858_100065138 3300005842 Bacteria 3372
21 Ga0081455_10236295 3300005937 Bacteria 1345
22 Ga0081538_10001098 3300005981 Bacteria 28674
23 Ga0081539_10009338 3300005985 Bacteria 8228
24 Ga0075365_10248138 3300006038 Bacteria 1251
25 Ga0075368_10026690 3300006042 Bacteria 2222
26 Ga0075363_100000053 3300006048 Bacteria 22667
27 Ga0075432_10001054 3300006058 Bacteria 8785
28 Ga0075367_10012521 3300006178 Bacteria 4527
29 Ga0068871_100132868 3300006358 Bacteria 2111
30 Ga0075428_100057687 3300006844 Bacteria 4250
31 Ga0075428_100162936 3300006844 Bacteria 2420
32 Ga0075428_100444366 3300006844 Bacteria 1389
33 Ga0075430_100048355 3300006846 Bacteria 3591
34 Ga0075431_100068985 3300006847 Bacteria 3648
35 Ga0075433_10002045 3300006852 Bacteria 15233
36 Ga0075434_100009664 3300006871 Bacteria 9011
37 Ga0075429_100004395 3300006880 Bacteria 12109
38 Ga0075429_100297178 3300006880 Bacteria 1414
39 Ga0075436_100007547 3300006914 Bacteria 7428
40 Ga0075435_100001107 3300007076 Bacteria 17163
41 Ga0111539_10134362 3300009094 Bacteria 2897
42 Ga0111539_10431798 3300009094 Bacteria 1534
43 Ga0105245_10332615 3300009098 Bacteria 1500
44 Ga0114129_10003852 3300009147 Bacteria 21156
45 Ga0114129_10175266 3300009147 Bacteria 2921
46 Ga0114129_10179948 3300009147 Bacteria 2878
47 Ga0105243_10072071 3300009148 Bacteria 2795
48 Ga0105248_10002720 3300009177 Bacteria 19640
49 Ga0105248_10353798 3300009177 Bacteria 1654
50 Ga0157378_10172412 3300013297 Bacteria 2030
51 Ga0163162_10211598 3300013306 Bacteria 2069
52 Ga0157372_10181035 3300013307 Bacteria 2439
53 Ga0163163_10024182 3300014325 Bacteria 5779
54 Ga0157380_10003518 3300014326 Bacteria 10767
55 Ga0157379_10025608 3300014968 Bacteria 5243
56 Ga0157379_10361654 3300014968 Bacteria 1330
57 Ga0157376_10090527 3300014969 Bacteria 2648
58 Ga0197907_11048522 3300020069 Bacteria 1634
59 Ga0206355_1085804 3300020076 Bacteria 1552
60 Ga0206354_10501993 3300020081 Bacteria 2577
61 Ga0207688_10074620 3300025901 Bacteria 1929
62 Ga0207681_10274958 3300025923 Bacteria 1324
63 Ga0207700_10090698 3300025928 Bacteria 2413
64 Ga0207706_10286027 3300025933 Bacteria 1437
65 Ga0207709_10149687 3300025935 Bacteria 1615
66 Ga0207691_10154026 3300025940 Bacteria 2020
67 Ga0207711_10019008 3300025941 Bacteria 5717
68 Ga0207711_10055280 3300025941 Bacteria 3408
69 Ga0207711_10092883 3300025941 Bacteria 2657
70 Ga0207661_10189169 3300025944 Bacteria 1804
71 Ga0207679_10098215 3300025945 Bacteria 2283
72 Ga0207712_10095259 3300025961 Bacteria 2201
73 Ga0207658_10192200 3300025986 Bacteria 1698
74 Ga0207677_10043586 3300026023 Bacteria 2984
75 Ga0207703_10019084 3300026035 Bacteria 5356
76 Ga0207678_10050588 3300026067 Bacteria 3590
77 Ga0207708_10150760 3300026075 Bacteria 1830
78 Ga0207702_10248273 3300026078 Bacteria 1670
79 Ga0207648_10102707 3300026089 Bacteria 2506
80 Ga0207676_10121384 3300026095 Bacteria 2205
81 Ga0207674_10027263 3300026116 Bacteria 6048
82 Ga0207674_10379219 3300026116 Bacteria 1367
83 Ga0207675_100069953 3300026118 Bacteria 3280
84 Ga0207683_10063645 3300026121 Bacteria 3249
85 Ga0209813_10013109 3300027866 Bacteria 2206
86 Ga0207428_10002114 3300027907 Bacteria 20025
87 Ga0268265_10431561 3300028380 Bacteria 1226
88 Ga0307515_10002752 3300028794 Bacteria 37583
89 Ga0307515_10169051 3300028794 Bacteria 2189
90 Ga0307515_10196704 3300028794 Bacteria 1906
91 Ga0307513_10006536 3300031456 Bacteria 15222
92 Ga0307513_10013375 3300031456 Bacteria 10075
93 Ga0307513_10140878 3300031456 Bacteria 2338
94 Ga0307509_10006894 3300031507 Bacteria 15094
95 Ga0307508_10211983 3300031616 Bacteria 1537
96 Ga0316576_10098571 3300031727 Bacteria 2183
97 Ga0316576_10199029 3300031727 Bacteria 1509
98 Ga0307410_10005817 3300031852 Bacteria 6578
99 Ga0307410_10073646 3300031852 Bacteria 2376
100 Ga0307409_100110056 3300031995 Bacteria 2308
101 Ga0307416_100036923 3300032002 Bacteria 3754
102 Ga0307416_100382024 3300032002 Bacteria 1439
103 Ga0307416_100525826 3300032002 Bacteria 1252
104 Ga0307415_100030719 3300032126 Bacteria 3452
105 Ga0307415_100035317 3300032126 Bacteria 3264
106 Ga0307415_100245410 3300032126 Bacteria 1451
107 Ga0307507_10147187 3300033179 Bacteria 1785
108 Ga0316588_1036923 3300033528 Bacteria 1161
109 Ga0316596_1027186 3300033541 Bacteria 1476
110 Ga0395899_0000005 3300037312 Bacteria 772966
111 Ga0395905_0104380 3300037471 Bacteria 2661
112 Ga0395901_0000026 3300038443 Bacteria 249248
113 Ga0395901_0105764 3300038443 Bacteria 2954
114 Ga0439442_001879 3300042002 Bacteria 4118
115 Ga0466963_0008937 3300044694 Bacteria 6014
116 Ga0466971_0016046 3300044719 Bacteria 3301
117 Ga0466958_0014148 3300045836 Bacteria 4553
118 Ga0466958_0061102 3300045836 Bacteria 2294
119 Ga0466967_0023537 3300045976 Bacteria 5050
120 Ga0466967_0302537 3300045976 Bacteria 1539
121 Ga0495603_0054898 3300046455 Bacteria 2361
122 Ga0495582_0086462 3300046473 Bacteria 1745
123 Ga0495594_0028831 3300046499 Bacteria 2997
124 Ga0495672_0003214 3300047320 Bacteria 14206
125 Ga0495686_0093474 3300047472 Bacteria 1823
126 Ga0496102_0129782 3300048905 Bacteria 2358
127 Ga0496104_0013208 3300048907 Bacteria 7444
128 Ga0496104_0096428 3300048907 Bacteria 2829
129 Ga0496105_0117232 3300048908 Bacteria 2196
130 Ga0496106_0000001 3300048909 Bacteria 497458
131 Ga0496109_0032098 3300048912 Bacteria 4717
132 Ga0496110_0003242 3300048913 Bacteria 12402
133 Ga0496110_0086054 3300048913 Bacteria 2806
134 Ga0496111_0054110 3300048914 Bacteria 2900
135 Ga0496112_0098426 3300048915 Bacteria 2894
136 Ga0496112_0135292 3300048915 Bacteria 2435
137 Ga0496113_0007927 3300048916 Bacteria 6875
138 Ga0496114_0000408 3300048917 Bacteria 31851
139 Ga0496114_0131177 3300048917 Bacteria 2164
140 Ga0496114_0654826 3300048917 Bacteria 923
141 Ga0496121_0025999 3300048924 Bacteria 5535
142 Ga0496122_0013672 3300048925 Bacteria 7922
143 Ga0496123_0006307 3300048926 Bacteria 11533
144 Ga0501033_0000347 3300049570 Bacteria 44046
145 Ga0501039_0048439 3300049575 Bacteria 3285
146 Ga0501040_0184990 3300049576 Bacteria 1477
147 Ga0501042_0215051 3300049578 Bacteria 1386
148 Ga0501046_0287827 3300049580 Bacteria 1202
149 Ga0501068_0023160 3300049584 Bacteria 3638
150 Ga0501071_0165112 3300049587 Bacteria 1656
151 Ga0501072_0018147 3300049588 Bacteria 5412
152 Ga0501074_0041222 3300049590 Bacteria 3343
153 Ga0501075_0013658 3300049591 Bacteria 5801
154 Ga0501035_0004815 3300049822 Bacteria 12793
155 Ga0501035_0036587 3300049822 Bacteria 4449
156 nmdc:mga03n38_3041_c1 3300050490 Bacteria 5313
157 nmdc:mga04h51_12925_c1 3300050495 Bacteria 2354
158 nmdc:mga05p37_381890_c1 3300050507 Bacteria 1650
159 nmdc:mga09592_155539_c1 3300050508 Bacteria 1974
160 nmdc:mga0qj67_168513_c1 3300050509 Bacteria 1778
161 nmdc:mga0qj67_58327_c1 3300050509 Bacteria 3061
162 nmdc:mga08y16_36425_c1 3300050511 Bacteria 5168
163 nmdc:mga0n895_27453_c1 3300050512 Bacteria 5408
164 nmdc:mga0rr50_11451_c1 3300050513 Bacteria 5680
165 nmdc:mga08x19_11984_c1 3300050514 Bacteria 5218
166 nmdc:mga0a205_6849_c1 3300050515 Bacteria 10307
167 Ga0500646_0000025 3300053090 Bacteria 44553
168 Ga0500583_0102472 3300053092 Bacteria 1403
169 Ga0500568_0000354 3300053139 Bacteria 35656
170 Ga0500573_0007611 3300053140 Bacteria 5919
171 Ga0500588_0004289 3300053146 Bacteria 3079
172 Ga0500616_0000113 3300053153 Bacteria 150722
173 Ga0501084_0141135 3300054114 Bacteria 2028
174 Ga0466962_0048186 3300061719 Bacteria 2036
175 Ga0530510_0021983 3300061734 Bacteria 4541

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046473 Ga0495582_0086462 Ga0495582_0086462_352_1422 268
2 3300053140 Ga0500573_0007611 Ga0500573_0007611_1381_2391 275
3 3300046499 Ga0495594_0028831 Ga0495594_0028831_158_1228 278
4 3300047320 Ga0495672_0003214 Ga0495672_0003214_12225_13202 280
5 3300046455 Ga0495603_0054898 Ga0495603_0054898_379_1449 281
6 3300006880 Ga0075429_100297178 Ga0075429_1002971782 283
7 3300044694 Ga0466963_0008937 Ga0466963_0008937_2941_3921 284
8 3300044719 Ga0466971_0016046 Ga0466971_0016046_391_1371 284
9 3300045836 Ga0466958_0014148 Ga0466958_0014148_1974_2954 284
10 3300045976 Ga0466967_0023537 Ga0466967_0023537_2074_3054 284
11 3300061719 Ga0466962_0048186 Ga0466962_0048186_211_1191 284
12 3300013297 Ga0157378_10172412 Ga0157378_101724122 286
13 3300031852 Ga0307410_10073646 Ga0307410_100736463 286
14 3300045836 Ga0466958_0061102 Ga0466958_0061102_40_1032 286
15 3300005334 Ga0068869_100061037 Ga0068869_1000610373 287
16 3300005347 Ga0070668_100237729 Ga0070668_1002377292 287
17 3300031456 Ga0307513_10013375 Ga0307513_100133757 287
18 3300031456 Ga0307513_10140878 Ga0307513_101408782 287
19 3300006844 Ga0075428_100444366 Ga0075428_1004443661 288
20 3300009098 Ga0105245_10332615 Ga0105245_103326151 288
21 3300025933 Ga0207706_10286027 Ga0207706_102860272 288
22 3300025935 Ga0207709_10149687 Ga0207709_101496872 288
23 3300025940 Ga0207691_10154026 Ga0207691_101540262 288
24 3300025961 Ga0207712_10095259 Ga0207712_100952592 288
25 3300026089 Ga0207648_10102707 Ga0207648_101027072 288
26 3300026095 Ga0207676_10121384 Ga0207676_101213842 288
27 3300048917 Ga0496114_0131177 Ga0496114_0131177_18_1139 288
28 3300048925 Ga0496122_0013672 Ga0496122_0013672_5147_6139 288
29 3300048926 Ga0496123_0006307 Ga0496123_0006307_5614_6606 288
30 3300013307 Ga0157372_10181035 Ga0157372_101810353 289
31 3300048907 Ga0496104_0096428 Ga0496104_0096428_112_993 289
32 3300048917 Ga0496114_0000408 Ga0496114_0000408_20906_21787 289
33 3300048917 Ga0496114_0654826 Ga0496114_0654826_22_903 289
34 3300006038 Ga0075365_10248138 Ga0075365_102481381 290
35 3300006042 Ga0075368_10026690 Ga0075368_100266902 290
36 3300006048 Ga0075363_100000053 Ga0075363_10000005311 290
37 3300006178 Ga0075367_10012521 Ga0075367_100125213 290
38 3300027866 Ga0209813_10013109 Ga0209813_100131092 290
39 3300050490 nmdc:mga03n38_3041_c1 nmdc:mga03n38_3041_c1_2212_3180 290
40 3300050495 nmdc:mga04h51_12925_c1 nmdc:mga04h51_12925_c1_1125_2093 290
41 3300025986 Ga0207658_10192200 Ga0207658_101922001 291
42 3300050507 nmdc:mga05p37_381890_c1 nmdc:mga05p37_381890_c1_163_1116 291
43 3300005353 Ga0070669_100183964 Ga0070669_1001839642 292
44 3300005354 Ga0070675_100051984 Ga0070675_1000519842 292
45 3300009094 Ga0111539_10431798 Ga0111539_104317982 292
46 3300009147 Ga0114129_10175266 Ga0114129_101752662 292
47 3300009147 Ga0114129_10179948 Ga0114129_101799482 292
48 3300014326 Ga0157380_10003518 Ga0157380_100035183 292
49 3300025901 Ga0207688_10074620 Ga0207688_100746202 292
50 3300025923 Ga0207681_10274958 Ga0207681_102749581 292
51 3300026075 Ga0207708_10150760 Ga0207708_101507602 292
52 3300026118 Ga0207675_100069953 Ga0207675_1000699532 292
53 3300028380 Ga0268265_10431561 Ga0268265_104315611 292
54 3300038443 Ga0395901_0105764 Ga0395901_0105764_1677_2669 292
55 3300048905 Ga0496102_0129782 Ga0496102_0129782_593_1573 292
56 3300005338 Ga0068868_100204246 Ga0068868_1002042461 293
57 3300005842 Ga0068858_100065138 Ga0068858_1000651382 293
58 3300005937 Ga0081455_10236295 Ga0081455_102362952 293
59 3300013306 Ga0163162_10211598 Ga0163162_102115982 293
60 3300014968 Ga0157379_10025608 Ga0157379_100256083 293
61 3300014969 Ga0157376_10090527 Ga0157376_100905272 293
62 3300025941 Ga0207711_10092883 Ga0207711_100928832 293
63 3300025944 Ga0207661_10189169 Ga0207661_101891692 293
64 3300026023 Ga0207677_10043586 Ga0207677_100435863 293
65 3300026035 Ga0207703_10019084 Ga0207703_100190842 293
66 3300048912 Ga0496109_0032098 Ga0496109_0032098_2764_3834 293
67 3300048913 Ga0496110_0086054 Ga0496110_0086054_1630_2700 293
68 3300048914 Ga0496111_0054110 Ga0496111_0054110_372_1442 293
69 3300048915 Ga0496112_0135292 Ga0496112_0135292_1262_2332 293
70 3300005981 Ga0081538_10001098 Ga0081538_100010987 294
71 3300049578 Ga0501042_0215051 Ga0501042_0215051_118_1095 294
72 3300049587 Ga0501071_0165112 Ga0501071_0165112_631_1608 294
73 3300049591 Ga0501075_0013658 Ga0501075_0013658_1415_2392 294
74 3300053139 Ga0500568_0000354 Ga0500568_0000354_25063_26046 294
75 3300053153 Ga0500616_0000113 Ga0500616_0000113_33392_34378 294
76 3300054114 Ga0501084_0141135 Ga0501084_0141135_691_1665 294
77 3300020069 Ga0197907_11048522 Ga0197907_110485222 295
78 3300020076 Ga0206355_1085804 Ga0206355_10858041 295
79 3300020081 Ga0206354_10501993 Ga0206354_105019932 295
80 3300049576 Ga0501040_0184990 Ga0501040_0184990_322_1275 295
81 3300004799 Ga0058863_10070715 Ga0058863_100707151 296
82 3300004800 Ga0058861_11776299 Ga0058861_117762991 296
83 3300045976 Ga0466967_0302537 Ga0466967_0302537_339_1325 296
84 3300014968 Ga0157379_10361654 Ga0157379_103616542 297
85 3300031727 Ga0316576_10098571 Ga0316576_100985712 297
86 3300031727 Ga0316576_10199029 Ga0316576_101990291 297
87 3300032126 Ga0307415_100030719 Ga0307415_1000307193 297
88 3300033528 Ga0316588_1036923 Ga0316588_10369231 297
89 3300033541 Ga0316596_1027186 Ga0316596_10271861 297
90 iso_pu_bacteria 2894817345 2894817602 297
91 3300009148 Ga0105243_10072071 Ga0105243_100720712 298
92 3300031995 Ga0307409_100110056 Ga0307409_1001100562 298
93 3300032126 Ga0307415_100035317 Ga0307415_1000353172 298
94 3300049575 Ga0501039_0048439 Ga0501039_0048439_933_1901 298
95 3300049580 Ga0501046_0287827 Ga0501046_0287827_45_1013 298
96 3300049588 Ga0501072_0018147 Ga0501072_0018147_3301_4269 298
97 3300049590 Ga0501074_0041222 Ga0501074_0041222_260_1228 298
98 3300049822 Ga0501035_0036587 Ga0501035_0036587_1871_2839 298
99 3300061734 Ga0530510_0021983 Ga0530510_0021983_3183_4151 298
100 iso_pu_bacteria 2738541317 2738948485 298
101 iso_pu_bacteria 2919679072 2919682052 298
102 3300026121 Ga0207683_10063645 Ga0207683_100636451 299
103 3300005347 Ga0070668_100179551 Ga0070668_1001795511 301
104 3300005455 Ga0070663_100301011 Ga0070663_1003010112 301
105 3300005564 Ga0070664_100200530 Ga0070664_1002005303 301
106 3300006358 Ga0068871_100132868 Ga0068871_1001328681 301
107 3300026067 Ga0207678_10050588 Ga0207678_100505884 301
108 3300028794 Ga0307515_10169051 Ga0307515_101690512 301
109 3300005985 Ga0081539_10009338 Ga0081539_100093386 302
110 3300026116 Ga0207674_10379219 Ga0207674_103792192 302
111 3300028794 Ga0307515_10002752 Ga0307515_1000275227 302
112 3300049570 Ga0501033_0000347 Ga0501033_0000347_31877_32848 302
113 3300049822 Ga0501035_0004815 Ga0501035_0004815_2159_3130 302
114 iso_pu_bacteria 2870782633 2870786944 302
115 iso_pu_bacteria 2913308742 2913313274 302
116 iso_pu_bacteria 2558860112 2558914491 303
117 iso_pu_bacteria 2816332139 2816506216 304
118 3300031456 Ga0307513_10006536 Ga0307513_1000653611 305
119 3300050509 nmdc:mga0qj67_168513_c1 nmdc:mga0qj67_168513_c1_463_1416 305
120 3300053090 Ga0500646_0000025 Ga0500646_0000025_35004_35963 306
121 3300053092 Ga0500583_0102472 Ga0500583_0102472_49_1008 306
122 iso_pu_bacteria 2791354901 2791916254 306
123 3300050511 nmdc:mga08y16_36425_c1 nmdc:mga08y16_36425_c1_646_1614 307
124 3300050512 nmdc:mga0n895_27453_c1 nmdc:mga0n895_27453_c1_3084_4052 307
125 3300050513 nmdc:mga0rr50_11451_c1 nmdc:mga0rr50_11451_c1_468_1436 307
126 3300050514 nmdc:mga08x19_11984_c1 nmdc:mga08x19_11984_c1_649_1617 307
127 3300050515 nmdc:mga0a205_6849_c1 nmdc:mga0a205_6849_c1_415_1383 307
128 iso_pu_bacteria 2643221572 2643876702 307
129 iso_pu_bacteria 2643221619 2644114027 307
130 iso_pu_bacteria 2643221669 2644383757 307
131 iso_pu_bacteria 2773857763 2774398141 307
132 iso_pu_bacteria 2833709550 2833712506 307
133 iso_pu_bacteria 2857710386 2857712912 307
134 iso_pu_bacteria 2895660088 2895660901 307
135 iso_pu_bacteria 2935409751 2935413117 307
136 3300006844 Ga0075428_100162936 Ga0075428_1001629361 308
137 3300031507 Ga0307509_10006894 Ga0307509_1000689410 308
138 3300032002 Ga0307416_100036923 Ga0307416_1000369235 308
139 3300032126 Ga0307415_100245410 Ga0307415_1002454102 308
140 3300033179 Ga0307507_10147187 Ga0307507_101471871 308
141 3300005329 Ga0070683_100140770 Ga0070683_1001407702 309
142 3300005439 Ga0070711_100169048 Ga0070711_1001690482 309
143 3300005535 Ga0070684_100197104 Ga0070684_1001971041 309
144 3300005564 Ga0070664_100143549 Ga0070664_1001435492 309
145 3300005577 Ga0068857_100326513 Ga0068857_1003265132 309
146 3300005618 Ga0068864_100018782 Ga0068864_1000187827 309
147 3300005841 Ga0068863_100034148 Ga0068863_1000341481 309
148 3300006844 Ga0075428_100057687 Ga0075428_1000576872 309
149 3300006846 Ga0075430_100048355 Ga0075430_1000483553 309
150 3300006847 Ga0075431_100068985 Ga0075431_1000689854 309
151 3300006880 Ga0075429_100004395 Ga0075429_10000439511 309
152 3300009147 Ga0114129_10003852 Ga0114129_1000385223 309
153 3300014325 Ga0163163_10024182 Ga0163163_100241827 309
154 3300025928 Ga0207700_10090698 Ga0207700_100906982 309
155 3300025945 Ga0207679_10098215 Ga0207679_100982151 309
156 3300026078 Ga0207702_10248273 Ga0207702_102482732 309
157 3300026116 Ga0207674_10027263 Ga0207674_100272636 309
158 3300028794 Ga0307515_10196704 Ga0307515_101967042 309
159 3300037471 Ga0395905_0104380 Ga0395905_0104380_527_1513 309
160 3300048907 Ga0496104_0013208 Ga0496104_0013208_2824_3792 309
161 3300048908 Ga0496105_0117232 Ga0496105_0117232_42_1010 309
162 3300048913 Ga0496110_0003242 Ga0496110_0003242_5696_6664 309
163 3300048915 Ga0496112_0098426 Ga0496112_0098426_851_1819 309
164 3300048916 Ga0496113_0007927 Ga0496113_0007927_4748_5716 309
165 3300049584 Ga0501068_0023160 Ga0501068_0023160_514_1575 309
166 3300050508 nmdc:mga09592_155539_c1 nmdc:mga09592_155539_c1_564_1535 309
167 3300050509 nmdc:mga0qj67_58327_c1 nmdc:mga0qj67_58327_c1_1651_2622 309
168 3300053146 Ga0500588_0004289 Ga0500588_0004289_1912_2892 309
169 3300006058 Ga0075432_10001054 Ga0075432_100010546 310
170 3300006852 Ga0075433_10002045 Ga0075433_100020457 310
171 3300006871 Ga0075434_100009664 Ga0075434_1000096645 310
172 3300006914 Ga0075436_100007547 Ga0075436_1000075476 310
173 3300007076 Ga0075435_100001107 Ga0075435_10000110711 310
174 3300009094 Ga0111539_10134362 Ga0111539_101343622 310
175 3300027907 Ga0207428_10002114 Ga0207428_1000211413 310
176 3300031616 Ga0307508_10211983 Ga0307508_102119831 310
177 3300031852 Ga0307410_10005817 Ga0307410_100058177 311
178 3300032002 Ga0307416_100382024 Ga0307416_1003820241 311
179 3300032002 Ga0307416_100525826 Ga0307416_1005258262 311
180 3300042002 Ga0439442_001879 Ga0439442_001879_1932_2924 311
181 iso_pu_bacteria 2808606384 2808972575 311
182 iso_pu_bacteria 2808606390 2809007432 311
183 iso_pu_bacteria 2808606391 2809014542 311
184 3300003316 rootH1_10054237 rootH1_100542372 315
185 3300003323 rootH1_10078847 rootH1_100788472 315
186 3300009177 Ga0105248_10002720 Ga0105248_1000272021 315
187 3300009177 Ga0105248_10353798 Ga0105248_103537981 315
188 3300025941 Ga0207711_10019008 Ga0207711_100190082 315
189 3300025941 Ga0207711_10055280 Ga0207711_100552802 315
190 3300037312 Ga0395899_0000005 Ga0395899_0000005_705343_706290 315
191 3300038443 Ga0395901_0000026 Ga0395901_0000026_242485_243453 315
192 3300047472 Ga0495686_0093474 Ga0495686_0093474_763_1710 315
193 3300048909 Ga0496106_0000001 Ga0496106_0000001_184882_185829 315
194 3300048924 Ga0496121_0025999 Ga0496121_0025999_3500_4447 315

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

69

325

0.97

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

66

324

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1gud-assembly2.cif.gz_B hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations 0.9373 27 301
5hsg-assembly1.cif.gz_A crystal structure of an abc transporter solute binding protein from klebsiella pneumoniae (kpn_01730, target efi-511059), apo open structure 0.9212 28 307
3g1w-assembly1.cif.gz_B crystal structure of sugar abc transporter (sugar-binding protein) from bacillus halodurans 0.92 27 306
1urp-assembly2.cif.gz_B d-ribose-binding protein from escherichia coli 0.9121 27 303
3g1w-assembly1.cif.gz_A crystal structure of sugar abc transporter (sugar-binding protein) from bacillus halodurans 0.9112 27 306
ID Description Score Start End Superfamily
4wutA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9899 26 296 3.40.50.2300
4wutA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9827 26 296 3.40.50.2300
4wutA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9783 134 315 3.40.50.2300
4wutA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9717 134 315 3.40.50.2300
af_P76142_29_128_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9476 28 130 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A529X9J1-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9441 134 245 GO:0030246
GO:0030313
AF-A0A6C1QXF3-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9367 37 312 GO:0005886
GO:0030246
GO:0030313
AF-A0A436H9W1-F1-model_v4 Autoinducer 2 ABC transporter substrate-binding protein 0.9352 136 306 GO:0030246
GO:0030288
AF-A0A436H095-F1-model_v4 deleted 0.9324 133 305
AF-A0A7H4MZA1-F1-model_v4 Putative ABC transport system nucleotide binding/ATPase component 0.9301 204 311 GO:0030246
GO:0030313

Feature Viewer

pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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