F298742

General Info

Members Datasets Scaffolds Average Seq Length
194 141 388 468

Family's Representative Sequence

Representative Sequence 3300025910|Ga0207684_10000059|Ga0207684_1000005925
Length 467
Sequence MFMLLTLTSTTAPATDLGYLLHKSPSRLQSFGLTFGKAYVFYPEAHAERCTAALLLEVDPIGLVRDRRGPSGEGRTLEQYVNDRPYVASSFLSVAIAEVFGTALSGRSKEKPELATRELQLEARIAVLPCRGGESFLRRLFEPLGYSVAATQHALDETNKDWGLSRYFTVELKGNKRLSDLLAHLYVLIPVLDDDKHYWVGDDEVAKLVRRGEGWLATHPEREIIANRYLKHQRSLARRALEQLMGEEAPEPGIELAHAQEEADIEKSISLNEQRIGSVIAALKQSGAKRVVDLGCGEGRLLRALLKETSFEEIVGVDVSHRALEIANEKLRLERLPDKQRQRIKLIQGSLSYRDERLAGYDAAAVIEVIEHLDPPRLVAFERVLFEFARPGSVIVTTPNAEYNVKFENLPAGRFRHKDHRFEWSRQEFEAWAKRVADRFGYGVRFLPVGSEDPRVGAPTQMAVFAR

Samples

Sample ID Description Type Environment
1 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
24 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
25 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
26 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
36 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
37 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
47 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
52 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
53 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
54 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
57 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
58 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
88 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
89 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
90 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
91 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
92 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
93 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
94 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
95 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
96 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
97 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
100 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
101 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
102 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
105 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
106 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
107 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
111 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
112 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
117 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
118 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
119 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
120 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
121 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
122 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
123 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
124 3300049680 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_B_3_drought Metagenome Rhizosphere
125 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
130 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
131 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
136 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
137 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
138 2671180531 Gemmata sp. SH-PL17 Isolate Unclassified
139 2831426010 Nostoc sp. 106C Isolate Unclassified
140 2848694841 Nostoc sp. RF31YmG Isolate Unclassified
141 2849660919 Nostoc sp. T09 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.42
Metatranscriptomes 0.52
Isolates 2.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.55
Rhizosphere 93.81
Stem 0
Stem Tuber 0
Unclassified 4.64

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207684_10000059 3300025910 Bacteria 210483
2 rootL2_10059174 3300003322 Bacteria 1552
3 rootH1_10153493 3300003323 Bacteria 3220
4 Ga0065704_10007977 3300005289 Bacteria 3548
5 Ga0065707_10083808 3300005295 Bacteria 8203
6 Ga0070658_10004643 3300005327 Bacteria 11170
7 Ga0070670_100122207 3300005331 Bacteria 2246
8 Ga0068869_100114724 3300005334 Bacteria 2054
9 Ga0070680_100144684 3300005336 Bacteria 1994
10 Ga0070682_100042548 3300005337 Bacteria 2805
11 Ga0070689_100001432 3300005340 Bacteria 15211
12 Ga0070689_100024609 3300005340 Bacteria 4518
13 Ga0070661_100004769 3300005344 Bacteria 9333
14 Ga0070661_100077765 3300005344 Bacteria 2446
15 Ga0070692_10002797 3300005345 Bacteria 6881
16 Ga0070692_10027660 3300005345 Bacteria 2813
17 Ga0070659_100016765 3300005366 Bacteria 5503
18 Ga0070659_100031822 3300005366 Bacteria 4088
19 Ga0070703_10003527 3300005406 Bacteria 4449
20 Ga0070694_100002132 3300005444 Bacteria 11722
21 Ga0070694_100034208 3300005444 Bacteria 3349
22 Ga0070681_10007014 3300005458 Bacteria 10967
23 Ga0070681_10056904 3300005458 Bacteria 3891
24 Ga0070681_10061723 3300005458 Bacteria 3722
25 Ga0070706_100000009 3300005467 Bacteria 210456
26 Ga0070707_100006637 3300005468 Bacteria 10727
27 Ga0070698_100086733 3300005471 Bacteria 3117
28 Ga0070699_100073545 3300005518 Bacteria 2973
29 Ga0070679_100044008 3300005530 Bacteria 4447
30 Ga0070684_100154989 3300005535 Bacteria 2077
31 Ga0070697_100000954 3300005536 Bacteria 21797
32 Ga0070697_100202562 3300005536 Bacteria 1687
33 Ga0070704_100021100 3300005549 Bacteria 4217
34 Ga0070664_100003639 3300005564 Bacteria 12415
35 Ga0068859_100001336 3300005617 Bacteria 25188
36 Ga0068859_100040843 3300005617 Bacteria 4659
37 Ga0068859_100118038 3300005617 Bacteria 2719
38 Ga0068859_100129551 3300005617 Bacteria 2594
39 Ga0068859_100139307 3300005617 Bacteria 2500
40 Ga0068864_100010487 3300005618 Bacteria 7657
41 Ga0068864_100042317 3300005618 Bacteria 3898
42 Ga0068864_100075247 3300005618 Bacteria 2948
43 Ga0068861_100004073 3300005719 Bacteria 9793
44 Ga0068851_10008612 3300005834 Bacteria 4720
45 Ga0068870_10004284 3300005840 Bacteria 6137
46 Ga0068863_100021022 3300005841 Bacteria 6233
47 Ga0068863_100111603 3300005841 Unclassified 2604
48 Ga0068858_100127020 3300005842 Bacteria 2389
49 Ga0068860_100095582 3300005843 Bacteria 2832
50 Ga0068862_100094074 3300005844 Bacteria 2614
51 Ga0068862_100204521 3300005844 Unclassified 1782
52 Ga0081539_10012857 3300005985 Bacteria 6381
53 Ga0070717_10030259 3300006028 Bacteria 4349
54 Ga0075428_100047779 3300006844 Bacteria 4699
55 Ga0075428_100067703 3300006844 Bacteria 3908
56 Ga0075430_100001626 3300006846 Bacteria 18349
57 Ga0075431_100008293 3300006847 Bacteria 10390
58 Ga0075431_100020276 3300006847 Bacteria 6789
59 Ga0075431_100067895 3300006847 Bacteria 3680
60 Ga0075431_100140555 3300006847 Unclassified 2489
61 Ga0075433_10017625 3300006852 Bacteria 5922
62 Ga0075433_10122179 3300006852 Bacteria 2313
63 Ga0075433_10123411 3300006852 Bacteria 2301
64 Ga0075434_100017145 3300006871 Bacteria 6971
65 Ga0075434_100042067 3300006871 Bacteria 4529
66 Ga0075434_100071064 3300006871 Bacteria 3472
67 Ga0075429_100061978 3300006880 Bacteria 3259
68 Ga0075436_100005572 3300006914 Bacteria 8645
69 Ga0075436_100006717 3300006914 Bacteria 7875
70 Ga0097620_100001336 3300006931 Bacteria 25188
71 Ga0097620_100040842 3300006931 Bacteria 4659
72 Ga0097620_100118040 3300006931 Bacteria 2719
73 Ga0097620_100129547 3300006931 Bacteria 2594
74 Ga0097620_100139308 3300006931 Bacteria 2500
75 Ga0075435_100000625 3300007076 Bacteria 21720
76 Ga0099794_10021621 3300007265 Bacteria 2924
77 Ga0105240_10043706 3300009093 Bacteria 5698
78 Ga0105240_10295239 3300009093 Bacteria 1856
79 Ga0111539_10005633 3300009094 Bacteria 16192
80 Ga0114129_10057196 3300009147 Bacteria 5459
81 Ga0114129_10216783 3300009147 Bacteria 2584
82 Ga0105248_10019938 3300009177 Bacteria 7424
83 Ga0105237_10007500 3300009545 Bacteria 11930
84 Ga0105249_10038141 3300009553 Bacteria 4359
85 Ga0105249_10069058 3300009553 Bacteria 3261
86 Ga0105246_10125244 3300011119 Bacteria 1910
87 Ga0157373_10010067 3300013100 Bacteria 6967
88 Ga0157373_10125378 3300013100 Bacteria 1806
89 Ga0157370_10022297 3300013104 Bacteria 6303
90 Ga0157374_10085858 3300013296 Bacteria 2993
91 Ga0163162_10067314 3300013306 Bacteria 3632
92 Ga0163163_10009764 3300014325 Bacteria 8595
93 Ga0157380_10001712 3300014326 Bacteria 14475
94 Ga0163161_10075080 3300017792 Bacteria 2480
95 Ga0207656_10001884 3300025321 Bacteria 6984
96 Ga0207653_10000606 3300025885 Bacteria 12538
97 Ga0207643_10005077 3300025908 Bacteria 7048
98 Ga0207643_10008637 3300025908 Bacteria 5463
99 Ga0207705_10007186 3300025909 Bacteria 8203
100 Ga0207707_10027868 3300025912 Bacteria 4939
101 Ga0207707_10035561 3300025912 Bacteria 4355
102 Ga0207695_10011649 3300025913 Bacteria 10626
103 Ga0207695_10210089 3300025913 Bacteria 1857
104 Ga0207671_10018547 3300025914 Bacteria 5333
105 Ga0207660_10017750 3300025917 Bacteria 4733
106 Ga0207660_10092848 3300025917 Bacteria 2241
107 Ga0207649_10130908 3300025920 Bacteria 1704
108 Ga0207652_10068445 3300025921 Unclassified 3081
109 Ga0207646_10000084 3300025922 Bacteria 125911
110 Ga0207690_10016802 3300025932 Bacteria 4459
111 Ga0207690_10033032 3300025932 Unclassified 3324
112 Ga0207670_10000752 3300025936 Bacteria 17026
113 Ga0207670_10016531 3300025936 Bacteria 4437
114 Ga0207711_10014532 3300025941 Bacteria 6544
115 Ga0207689_10066113 3300025942 Bacteria 2974
116 Ga0207689_10126582 3300025942 Bacteria 2102
117 Ga0207679_10187527 3300025945 Bacteria 1716
118 Ga0207651_10109666 3300025960 Unclassified 2069
119 Ga0207712_10043773 3300025961 Bacteria 3090
120 Ga0207712_10077268 3300025961 Bacteria 2412
121 Ga0207641_10158984 3300026088 Bacteria 2053
122 Ga0207676_10006127 3300026095 Bacteria 8491
123 Ga0207674_10000472 3300026116 Bacteria 52784
124 Ga0207674_10189220 3300026116 Bacteria 2008
125 Ga0207428_10008561 3300027907 Bacteria 9232
126 Ga0268266_10000645 3300028379 Bacteria 47339
127 Ga0268265_10047884 3300028380 Bacteria 3206
128 Ga0268265_10237722 3300028380 Unclassified 1605
129 Ga0268264_10029977 3300028381 Bacteria 4460
130 Ga0265760_10009584 3300031090 Bacteria 2766
131 Ga0307508_10103388 3300031616 Bacteria 2445
132 Ga0265314_10045438 3300031711 Unclassified 3105
133 Ga0307412_10026396 3300031911 Bacteria 3610
134 Ga0307409_100022886 3300031995 Bacteria 4316
135 Ga0307416_100065161 3300032002 Bacteria 2992
136 Ga0307414_10006661 3300032004 Bacteria 6459
137 Ga0307414_10104449 3300032004 Bacteria 2140
138 Ga0307411_10036783 3300032005 Bacteria 3071
139 Ga0307411_10082724 3300032005 Bacteria 2215
140 Ga0307415_100005260 3300032126 Bacteria 6850
141 Ga0373943_0008464 3300035170 Unclassified 4615
142 Ga0373937_0009741 3300036401 Bacteria 8377
143 Ga0373925_0011402 3300037068 Bacteria 6443
144 Ga0395898_0166044 3300037466 Bacteria 2111
145 Ga0400487_63620 3300039110 Bacteria 2838
146 Ga0436363_0741130 3300039450 Bacteria 3189
147 Ga0436362_0273468 3300039453 Bacteria 5864
148 Ga0453684_0016157 3300044712 Bacteria 11703
149 Ga0495580_0002507 3300046472 Bacteria 16020
150 Ga0495580_0004056 3300046472 Bacteria 12359
151 Ga0495580_0050195 3300046472 Bacteria 2950
152 Ga0495604_0057298 3300047317 Bacteria 2996
153 Ga0495684_0063689 3300047471 Bacteria 2803
154 Ga0496104_0202367 3300048907 Bacteria 1898
155 Ga0496113_0065698 3300048916 Bacteria 2746
156 Ga0496114_0001745 3300048917 Bacteria 16511
157 Ga0501298_006823 3300049521 Bacteria 1880
158 Ga0501299_000997 3300049522 Bacteria 3526
159 Ga0501043_0000591 3300049579 Bacteria 32159
160 Ga0501046_0000015 3300049580 Bacteria 242157
161 Ga0501047_0008044 3300049581 Bacteria 9949
162 Ga0501048_0003687 3300049582 Bacteria 11670
163 Ga0501067_0001360 3300049583 Bacteria 13223
164 Ga0501071_0081376 3300049587 Bacteria 2370
165 Ga0501073_0000073 3300049589 Bacteria 62577
166 Ga0501217_000784 3300049661 Bacteria 5534
167 Ga0501224_007325 3300049664 Bacteria 1607
168 Ga0501227_000235 3300049665 Bacteria 11221
169 Ga0501233_001481 3300049668 Bacteria 4005
170 Ga0501235_005723 3300049669 Bacteria 2703
171 Ga0501250_003813 3300049680 Bacteria 1468
172 Ga0501083_0000015 3300049744 Bacteria 175355
173 Ga0501035_0035036 3300049822 Bacteria 4559
174 Ga0501044_0001254 3300049823 Bacteria 30136
175 Ga0501045_0043468 3300049824 Bacteria 3272
176 nmdc:mga05p37_157594_c1 3300050507 Bacteria 2774
177 nmdc:mga05p37_204806_c1 3300050507 Bacteria 2387
178 nmdc:mga09592_197668_c1 3300050508 Bacteria 1741
179 nmdc:mga0qj67_1047_c1 3300050509 Bacteria 19127
180 nmdc:mga0qj67_40151_c1 3300050509 Bacteria 3678
181 nmdc:mga0qj67_42357_c1 3300050509 Bacteria 3584
182 nmdc:mga06r32_11904_c1 3300050510 Bacteria 7834
183 nmdc:mga06r32_153136_c1 3300050510 Bacteria 2285
184 nmdc:mga08y16_14862_c1 3300050511 Bacteria 8186
185 nmdc:mga0n895_66050_c1 3300050512 Bacteria 3582
186 nmdc:mga0rr50_7295_c1 3300050513 Bacteria 6802
187 nmdc:mga08x19_3134_c1 3300050514 Bacteria 9940
188 nmdc:mga08x19_3524_c1 3300050514 Bacteria 9310
189 nmdc:mga0a205_33270_c1 3300050515 Bacteria 4944
190 nmdc:mga0a205_78606_c2 3300050515 Bacteria 2482
191 2673161694 2671180531 Bacteria 9045424
192 2831430478 2831426010 Bacteria 8662725
193 2848702134 2848694841 Bacteria 9205737
194 2849663371 2849660919 Bacteria 8251853
195 Ga0207684_10000059
196 rootL2_10059174
197 rootH1_10153493
198 Ga0065704_10007977
199 Ga0065707_10083808
200 Ga0070658_10004643
201 Ga0070670_100122207
202 Ga0068869_100114724
203 Ga0070680_100144684
204 Ga0070682_100042548
205 Ga0070689_100001432
206 Ga0070689_100024609
207 Ga0070661_100004769
208 Ga0070661_100077765
209 Ga0070692_10002797
210 Ga0070692_10027660
211 Ga0070659_100016765
212 Ga0070659_100031822
213 Ga0070703_10003527
214 Ga0070694_100002132
215 Ga0070694_100034208
216 Ga0070681_10007014
217 Ga0070681_10056904
218 Ga0070681_10061723
219 Ga0070706_100000009
220 Ga0070707_100006637
221 Ga0070698_100086733
222 Ga0070699_100073545
223 Ga0070679_100044008
224 Ga0070684_100154989
225 Ga0070697_100000954
226 Ga0070697_100202562
227 Ga0070704_100021100
228 Ga0070664_100003639
229 Ga0068859_100001336
230 Ga0068859_100040843
231 Ga0068859_100118038
232 Ga0068859_100129551
233 Ga0068859_100139307
234 Ga0068864_100010487
235 Ga0068864_100042317
236 Ga0068864_100075247
237 Ga0068861_100004073
238 Ga0068851_10008612
239 Ga0068870_10004284
240 Ga0068863_100021022
241 Ga0068863_100111603
242 Ga0068858_100127020
243 Ga0068860_100095582
244 Ga0068862_100094074
245 Ga0068862_100204521
246 Ga0081539_10012857
247 Ga0070717_10030259
248 Ga0075428_100047779
249 Ga0075428_100067703
250 Ga0075430_100001626
251 Ga0075431_100008293
252 Ga0075431_100020276
253 Ga0075431_100067895
254 Ga0075431_100140555
255 Ga0075433_10017625
256 Ga0075433_10122179
257 Ga0075433_10123411
258 Ga0075434_100017145
259 Ga0075434_100042067
260 Ga0075434_100071064
261 Ga0075429_100061978
262 Ga0075436_100005572
263 Ga0075436_100006717
264 Ga0097620_100001336
265 Ga0097620_100040842
266 Ga0097620_100118040
267 Ga0097620_100129547
268 Ga0097620_100139308
269 Ga0075435_100000625
270 Ga0099794_10021621
271 Ga0105240_10043706
272 Ga0105240_10295239
273 Ga0111539_10005633
274 Ga0114129_10057196
275 Ga0114129_10216783
276 Ga0105248_10019938
277 Ga0105237_10007500
278 Ga0105249_10038141
279 Ga0105249_10069058
280 Ga0105246_10125244
281 Ga0157373_10010067
282 Ga0157373_10125378
283 Ga0157370_10022297
284 Ga0157374_10085858
285 Ga0163162_10067314
286 Ga0163163_10009764
287 Ga0157380_10001712
288 Ga0163161_10075080
289 Ga0207656_10001884
290 Ga0207653_10000606
291 Ga0207643_10005077
292 Ga0207643_10008637
293 Ga0207705_10007186
294 Ga0207707_10027868
295 Ga0207707_10035561
296 Ga0207695_10011649
297 Ga0207695_10210089
298 Ga0207671_10018547
299 Ga0207660_10017750
300 Ga0207660_10092848
301 Ga0207649_10130908
302 Ga0207652_10068445
303 Ga0207646_10000084
304 Ga0207690_10016802
305 Ga0207690_10033032
306 Ga0207670_10000752
307 Ga0207670_10016531
308 Ga0207711_10014532
309 Ga0207689_10066113
310 Ga0207689_10126582
311 Ga0207679_10187527
312 Ga0207651_10109666
313 Ga0207712_10043773
314 Ga0207712_10077268
315 Ga0207641_10158984
316 Ga0207676_10006127
317 Ga0207674_10000472
318 Ga0207674_10189220
319 Ga0207428_10008561
320 Ga0268266_10000645
321 Ga0268265_10047884
322 Ga0268265_10237722
323 Ga0268264_10029977
324 Ga0265760_10009584
325 Ga0307508_10103388
326 Ga0265314_10045438
327 Ga0307412_10026396
328 Ga0307409_100022886
329 Ga0307416_100065161
330 Ga0307414_10006661
331 Ga0307414_10104449
332 Ga0307411_10036783
333 Ga0307411_10082724
334 Ga0307415_100005260
335 Ga0373943_0008464
336 Ga0373937_0009741
337 Ga0373925_0011402
338 Ga0395898_0166044
339 Ga0400487_63620
340 Ga0436363_0741130
341 Ga0436362_0273468
342 Ga0453684_0016157
343 Ga0495580_0002507
344 Ga0495580_0004056
345 Ga0495580_0050195
346 Ga0495604_0057298
347 Ga0495684_0063689
348 Ga0496104_0202367
349 Ga0496113_0065698
350 Ga0496114_0001745
351 Ga0501298_006823
352 Ga0501299_000997
353 Ga0501043_0000591
354 Ga0501046_0000015
355 Ga0501047_0008044
356 Ga0501048_0003687
357 Ga0501067_0001360
358 Ga0501071_0081376
359 Ga0501073_0000073
360 Ga0501217_000784
361 Ga0501224_007325
362 Ga0501227_000235
363 Ga0501233_001481
364 Ga0501235_005723
365 Ga0501250_003813
366 Ga0501083_0000015
367 Ga0501035_0035036
368 Ga0501044_0001254
369 Ga0501045_0043468
370 nmdc:mga05p37_157594_c1
371 nmdc:mga05p37_204806_c1
372 nmdc:mga09592_197668_c1
373 nmdc:mga0qj67_1047_c1
374 nmdc:mga0qj67_40151_c1
375 nmdc:mga0qj67_42357_c1
376 nmdc:mga06r32_11904_c1
377 nmdc:mga06r32_153136_c1
378 nmdc:mga08y16_14862_c1
379 nmdc:mga0n895_66050_c1
380 nmdc:mga0rr50_7295_c1
381 nmdc:mga08x19_3134_c1
382 nmdc:mga08x19_3524_c1
383 nmdc:mga0a205_33270_c1
384 nmdc:mga0a205_78606_c2
385 2673161694
386 2831430478
387 2848702134
388 2849663371

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12623

Hen1_L

RNA repair, ligase-Pnkp-associating, region of Hen1

3

245

0.99

PF13649

Methyltransf_25

Methyltransferase domain

291

392

0.91

PF05175

MTS

Methyltransferase small domain

277

351

0.89

PF08241

Methyltransf_11

Methyltransferase domain

292

396

0.84

PF08242

Methyltransf_12

Methyltransferase domain

292

395

0.82

PF13489

Methyltransf_23

Methyltransferase domain

229

436

0.78

PF13847

Methyltransf_31

Methyltransferase domain

285

432

0.73

Structural Annotation

Top 5 Hits

ID Description Score Start End
3jwh-assembly2.cif.gz_B crystal structure analysis of the methyltransferase domain of bacterial-avhen1-c 0.965 270 467
3jwj-assembly1.cif.gz_A crystal structure analysis of the methyltransferase domain of bacterial-avhen1-cn 0.9605 270 467
3jwi-assembly2.cif.gz_B crystal structure analysis of the methyltransferase domain of bacterial-cthen1-cn 0.9564 270 465
3jwg-assembly1.cif.gz_A crystal structure analysis of the methyltransferase domain of bacterial-cthen1-c 0.9521 270 467
3jwj-assembly1.cif.gz_A crystal structure analysis of the methyltransferase domain of bacterial-avhen1-cn 0.9506 270 467
ID Description Score Start End Superfamily
3jwjA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9605 270 467 3.40.50.150
3jwjA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9506 270 467 3.40.50.150
4dqzB00 Alpha Beta;2-Layer Sandwich;c-terminal autoproteolytic domain of nucleoporin nup98;Hen1, N-terminal domain 0.9484 1 223 3.30.1610.20
4dqzB00 Alpha Beta;2-Layer Sandwich;c-terminal autoproteolytic domain of nucleoporin nup98;Hen1, N-terminal domain 0.9375 1 223 3.30.1610.20
af_Q568P9_1_244_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9154 270 469 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A7V5UKD0-F1-model_v4 Small RNA 2'-O-methyltransferase (EC 2.1.1.386) 0.9981 291 466 GO:0001510
GO:0008171
GO:0008173
GO:0031047
AF-A0A5N0EE75-F1-model_v4 Small RNA 2'-O-methyltransferase (EC 2.1.1.386) 0.9979 270 470 GO:0001510
GO:0008171
GO:0008173
GO:0031047
AF-A0A251XJL2-F1-model_v4 Small RNA 2'-O-methyltransferase (EC 2.1.1.386) 0.9977 340 468 GO:0001510
GO:0008171
GO:0008173
GO:0031047
AF-A0A2W2CTB3-F1-model_v4 Small RNA 2'-O-methyltransferase (EC 2.1.1.386) 0.9962 270 470 GO:0001510
GO:0008171
GO:0008173
GO:0031047
AF-A0A3C0ANV6-F1-model_v4 Small RNA 2'-O-methyltransferase (EC 2.1.1.386) 0.9941 270 470 GO:0001510
GO:0008171
GO:0008173
GO:0031047

Map