F296341

General Info

Members Datasets Scaffolds Average Seq Length
192 153 384 355

Family's Representative Sequence

Representative Sequence 3300053107|Ga0500560_000531|Ga0500560_000531_1825_2973
Length 376
Sequence VRFVKVVSIVGARPQLVKLAPIAAEFAAGGHKHEHVIVHTGQHYDADLSDVFFSGLGIPDPDVHLGVGSGSHGAQTGAVLAALDPVLERERPDWVLVYGDTNSTVAGALSAVKMHLPVAHLEAGLRSFNRRMPEEHNRVLTDHCADLLLAPTEEAMRHLAAEGLAGRAELAGDVMVDICLRIRDTVRGGGHPPPALPEGIDPERPFLLATLHRPDNTDDPERLSAIIGALAGLPLPVALLAHPRLVARADAHGIKLDRGSVRTGRPLPYAGMVAAVLASAGVVTDSGGLQKEAFLLERITTTIRPETEWVETVNSGWNVLVADPHTLDAEAWAATVTRPAPLTAPGTPYGDGRAARNVLQIMERSERKGGNACDRT

Samples

Sample ID Description Type Environment
1 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
7 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
8 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
9 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
10 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
11 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
12 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
13 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
14 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
15 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
18 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
19 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
20 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
21 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
31 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
32 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
33 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
34 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
35 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
36 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
37 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
38 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
39 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
43 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
44 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
45 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
46 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
47 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
48 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
49 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
50 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
51 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
52 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
53 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
54 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
55 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
58 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
59 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
60 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
61 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
62 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
63 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
64 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
65 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
66 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
67 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
68 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
69 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
70 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
71 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
72 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
73 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
74 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
75 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
76 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
77 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
78 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
83 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
84 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
85 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
93 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
95 3300049536 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
96 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
97 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
110 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
115 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
116 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
117 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
122 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
123 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
124 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
125 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
126 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
127 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
128 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
129 2643221576 Nocardioides sp. Root614 Isolate Unclassified
130 2643221578 Streptomyces sp. Root63 Isolate Unclassified
131 2643221590 Nocardioides sp. Root682 Isolate Unclassified
132 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
133 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
134 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
135 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
136 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
137 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
138 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
139 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
140 2858868258 Micromonospora sp. MH33 Isolate Unclassified
141 2861520306 Phytomonospora endophytica DSM 45386 Isolate Unclassified
142 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
143 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
144 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
145 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
146 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
147 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
148 2996221748 Micromonospora veneta CAP181 Isolate Unclassified
149 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
150 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
151 8004025490 Arthrobacter wenxiniae AETb3-4 Isolate Rhizosphere
152 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
153 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 81.77
Metatranscriptomes 4.17
Isolates 14.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.6
Nodule 0.52
Rhizoplane 8.33
Rhizosphere 74.48
Stem 0
Stem Tuber 0
Unclassified 0.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500560_000531 3300053107 Bacteria 5405
2 JGI24740J21852_10019415 3300001979 Bacteria 2394
3 JGI24737J22298_10002502 3300001990 Bacteria 6536
4 Ga0006562J51391_1092156 3300003578 Bacteria 8309
5 Ga0006562J51391_1092159 3300003578 Bacteria 4390
6 Ga0070682_100028498 3300005337 Bacteria 3359
7 Ga0068853_100329910 3300005539 Bacteria 1416
8 Ga0081539_10003707 3300005985 Bacteria 18201
9 Ga0081539_10017945 3300005985 Bacteria 4938
10 Ga0081539_10023336 3300005985 Bacteria 4054
11 Ga0075432_10006381 3300006058 Bacteria 4011
12 Ga0070712_100093995 3300006175 Bacteria 2202
13 Ga0075430_100014368 3300006846 Bacteria 6747
14 Ga0075429_100014744 3300006880 Bacteria 6774
15 Ga0114129_10000131 3300009147 Bacteria 76741
16 Ga0114129_10050622 3300009147 Bacteria 5834
17 Ga0105238_10287259 3300009551 Bacteria 1627
18 Ga0157371_10005369 3300013102 Bacteria 10830
19 Ga0157370_10000756 3300013104 Bacteria 40377
20 Ga0157369_10001903 3300013105 Bacteria 25179
21 Ga0157369_10328708 3300013105 Bacteria 1589
22 Ga0163162_10172671 3300013306 Bacteria 2286
23 Ga0163162_10175500 3300013306 Bacteria 2268
24 Ga0157372_10083292 3300013307 Bacteria 3623
25 Ga0157377_10279995 3300014745 Bacteria 1093
26 Ga0209758_1005583 3300025297 Bacteria 9570
27 Ga0207647_10087494 3300025904 Bacteria 1861
28 Ga0207699_10136127 3300025906 Bacteria 1609
29 Ga0207693_10275803 3300025915 Bacteria 1317
30 Ga0207700_10014709 3300025928 Bacteria 5137
31 Ga0207678_10215686 3300026067 Bacteria 1642
32 Ga0207702_10168509 3300026078 Bacteria 2006
33 Ga0207676_10182932 3300026095 Bacteria 1837
34 Ga0207675_100378841 3300026118 Bacteria 1391
35 Ga0207683_10169245 3300026121 Bacteria 1978
36 Ga0207428_10026234 3300027907 Bacteria 4865
37 Ga0307515_10000088 3300028794 Bacteria 215810
38 Ga0307512_10108828 3300030522 Bacteria 1837
39 Ga0307513_10013847 3300031456 Bacteria 9885
40 Ga0307513_10089989 3300031456 Bacteria 3132
41 Ga0307408_100201140 3300031548 Bacteria 1612
42 Ga0307508_10081652 3300031616 Bacteria 2814
43 Ga0307516_10001837 3300031730 Bacteria 29139
44 Ga0307516_10006978 3300031730 Bacteria 13099
45 Ga0307405_10138134 3300031731 Bacteria 1695
46 Ga0307413_10008474 3300031824 Bacteria 4857
47 Ga0307406_10021344 3300031901 Bacteria 3829
48 Ga0307406_10272087 3300031901 Bacteria 1287
49 Ga0307409_100158269 3300031995 Bacteria 1977
50 Ga0307416_100071772 3300032002 Bacteria 2878
51 Ga0307416_100126567 3300032002 Bacteria 2289
52 Ga0307415_100012281 3300032126 Bacteria 4946
53 Ga0307415_100152683 3300032126 Bacteria 1779
54 Ga0307415_100228990 3300032126 Bacteria 1495
55 Ga0395899_0011320 3300037312 Bacteria 6832
56 Ga0395900_0245919 3300037418 Bacteria 1792
57 Ga0395898_0101512 3300037466 Bacteria 2762
58 Ga0395898_0428192 3300037466 Bacteria 1261
59 Ga0395901_0041833 3300038443 Bacteria 4750
60 Ga0436363_1099470 3300039450 Bacteria 1906
61 Ga0451853_1587802 3300041512 Bacteria 3429
62 Ga0439449_0001172 3300042007 Bacteria 10280
63 Ga0466969_0007800 3300044656 Bacteria 5690
64 Ga0466969_0008743 3300044656 Bacteria 5367
65 Ga0466969_0052338 3300044656 Bacteria 2006
66 Ga0466961_0041338 3300044693 Bacteria 2955
67 Ga0466971_0000455 3300044719 Bacteria 15991
68 Ga0466971_0012856 3300044719 Bacteria 3670
69 Ga0466970_0004532 3300044765 Bacteria 6854
70 Ga0466957_0242013 3300044842 Bacteria 1197
71 Ga0466959_0016932 3300045049 Bacteria 5335
72 Ga0466959_0071273 3300045049 Bacteria 2516
73 Ga0466967_0094670 3300045976 Bacteria 2720
74 Ga0466967_0267574 3300045976 Bacteria 1637
75 Ga0495627_017660 3300046453 Bacteria 2420
76 Ga0495651_0002523 3300046462 Bacteria 14171
77 Ga0495653_0009593 3300046463 Bacteria 7917
78 Ga0495582_0027688 3300046473 Bacteria 3108
79 Ga0495664_0298304 3300046477 Bacteria 973
80 Ga0495628_0066673 3300046516 Bacteria 2814
81 Ga0495652_0004699 3300046529 Bacteria 13016
82 Ga0495665_0001398 3300046531 Bacteria 12917
83 Ga0495586_0009410 3300046535 Bacteria 5200
84 Ga0495587_0003758 3300046536 Bacteria 10067
85 Ga0495645_0000579 3300046543 Bacteria 25051
86 Ga0495645_0041393 3300046543 Bacteria 3360
87 Ga0495667_0001862 3300046559 Bacteria 13986
88 Ga0495634_0176236 3300046642 Bacteria 1341
89 Ga0495635_0001268 3300046663 Bacteria 16883
90 Ga0495657_0017906 3300046675 Bacteria 5139
91 Ga0495646_0013110 3300046680 Bacteria 5267
92 Ga0495670_0019472 3300046691 Bacteria 3345
93 Ga0495670_0041232 3300046691 Bacteria 2303
94 Ga0495600_0017016 3300046809 Bacteria 4621
95 Ga0495600_0046919 3300046809 Bacteria 2818
96 Ga0495581_0027433 3300047315 Bacteria 3302
97 Ga0495636_0115787 3300047318 Bacteria 1182
98 Ga0495675_0025237 3300047444 Bacteria 3789
99 Ga0495675_0165264 3300047444 Bacteria 1361
100 Ga0496100_0000455 3300048903 Bacteria 19701
101 Ga0496101_0002162 3300048904 Bacteria 12009
102 Ga0496102_0003798 3300048905 Bacteria 12766
103 Ga0496102_0334372 3300048905 Bacteria 1426
104 Ga0496103_0002365 3300048906 Bacteria 11894
105 Ga0496104_0157141 3300048907 Bacteria 2182
106 Ga0496105_0016690 3300048908 Bacteria 5866
107 Ga0496105_0048513 3300048908 Bacteria 3505
108 Ga0496106_0002488 3300048909 Bacteria 13723
109 Ga0496106_0186134 3300048909 Bacteria 1650
110 Ga0496107_0011035 3300048910 Bacteria 6285
111 Ga0496110_0018778 3300048913 Bacteria 5803
112 Ga0496110_0028477 3300048913 Bacteria 4798
113 Ga0496111_0014146 3300048914 Bacteria 5444
114 Ga0496114_0004096 3300048917 Bacteria 11271
115 Ga0496115_0002415 3300048918 Bacteria 13411
116 Ga0496117_0004661 3300048920 Bacteria 14917
117 Ga0496118_0043220 3300048921 Bacteria 3545
118 Ga0496126_0155174 3300048929 Bacteria 1960
119 Ga0501306_002261 3300049127 Bacteria 1948
120 Ga0501317_000254 3300049533 Bacteria 3358
121 Ga0501320_006967 3300049536 Bacteria 1075
122 Ga0501321_008888 3300049537 Bacteria 1075
123 Ga0501323_000740 3300049539 Bacteria 2587
124 Ga0501323_011440 3300049539 Bacteria 1071
125 Ga0501032_0020065 3300049569 Bacteria 4660
126 Ga0501034_0006763 3300049571 Bacteria 12268
127 Ga0501034_0041401 3300049571 Bacteria 4660
128 Ga0501034_0114480 3300049571 Bacteria 2685
129 Ga0501034_0322681 3300049571 Bacteria 1477
130 Ga0501036_0062636 3300049572 Bacteria 3150
131 Ga0501038_0042188 3300049574 Unclassified 3974
132 Ga0501038_0063531 3300049574 Bacteria 3150
133 Ga0501039_0043749 3300049575 Bacteria 3458
134 Ga0501040_0050075 3300049576 Bacteria 2856
135 Ga0501042_0020376 3300049578 Bacteria 4615
136 Ga0501043_0148003 3300049579 Bacteria 1838
137 Ga0501046_0050682 3300049580 Bacteria 3278
138 Ga0501047_0078628 3300049581 Bacteria 3171
139 Ga0501047_0103539 3300049581 Bacteria 2727
140 Ga0501047_0345499 3300049581 Bacteria 1325
141 Ga0501048_0049065 3300049582 Bacteria 3009
142 Ga0501068_0032214 3300049584 Bacteria 3116
143 Ga0501069_0005929 3300049585 Bacteria 6371
144 Ga0501070_0000443 3300049586 Bacteria 37718
145 Ga0501070_0060561 3300049586 Bacteria 3137
146 Ga0501071_0004381 3300049587 Bacteria 8956
147 Ga0501071_0005879 3300049587 Bacteria 7931
148 Ga0501072_0000317 3300049588 Bacteria 34327
149 Ga0501074_0021723 3300049590 Bacteria 4659
150 Ga0501079_0025427 3300049741 Bacteria 4541
151 Ga0501080_0000038 3300049742 Bacteria 82193
152 Ga0501080_0014852 3300049742 Bacteria 7171
153 Ga0501080_0074055 3300049742 Bacteria 3168
154 Ga0501035_0033883 3300049822 Bacteria 4642
155 Ga0501044_0044987 3300049823 Bacteria 4577
156 Ga0501045_0039218 3300049824 Bacteria 3446
157 nmdc:mga05p37_70969_c1 3300050507 Plasmid 4284
158 Ga0495601_0018602 3300053077 Bacteria 4229
159 Ga0495612_0001178 3300053078 Bacteria 10763
160 Ga0500635_0000004 3300053080 Bacteria 210675
161 Ga0500568_0006094 3300053139 Bacteria 6112
162 Ga0500568_0013886 3300053139 Bacteria 3657
163 Ga0501084_0030007 3300054114 Bacteria 4548
164 Ga0466962_0000347 3300061719 Bacteria 19854
165 Ga0466962_0004198 3300061719 Bacteria 6899
166 2554258593 2554235005 Bacteria 6457341
167 2623587737 2622736626 Bacteria 7181580
168 2643892766 2643221576 Bacteria 5214352
169 2643897873 2643221578 Bacteria 9213798
170 2643962215 2643221590 Bacteria 5214697
171 2644409018 2643221673 Bacteria 9196637
172 2644436371 2643221678 Bacteria 9540101
173 2731908763 2731639228 Bacteria 4187555
174 2795780052 2795385470 Bacteria 8317180
175 2799184792 2799112218 Bacteria 4315149
176 2808841259 2808606359 Bacteria 9866990
177 2808919941 2808606375 Bacteria 9466072
178 2811848263 2808606982 Bacteria 7791042
179 2858868642 2858868258 Bacteria 7683772
180 2861521364 2861520306 Bacteria 8348283
181 2887445908 2887443736 Bacteria 4426037
182 2887483675 2887478801 Bacteria 8972725
183 2919468661 2919468124 Bacteria 9133025
184 2946034318 2946033335 Bacteria 3835514
185 2946050870 2946045630 Bacteria 8527308
186 2966603296 2966598605 Bacteria 7676064
187 2996221800 2996221748 Bacteria 6799777
188 8003857011 8003856774 Bacteria 7675274
189 8004023426 8004021418 Bacteria 4313954
190 8004026490 8004025490 Bacteria 4327753
191 8025535124 8025530807 Bacteria 8495698
192 8055418612 8055412473 Bacteria 6257500
193 Ga0500560_000531
194 JGI24740J21852_10019415
195 JGI24737J22298_10002502
196 Ga0006562J51391_1092156
197 Ga0006562J51391_1092159
198 Ga0070682_100028498
199 Ga0068853_100329910
200 Ga0081539_10003707
201 Ga0081539_10017945
202 Ga0081539_10023336
203 Ga0075432_10006381
204 Ga0070712_100093995
205 Ga0075430_100014368
206 Ga0075429_100014744
207 Ga0114129_10000131
208 Ga0114129_10050622
209 Ga0105238_10287259
210 Ga0157371_10005369
211 Ga0157370_10000756
212 Ga0157369_10001903
213 Ga0157369_10328708
214 Ga0163162_10172671
215 Ga0163162_10175500
216 Ga0157372_10083292
217 Ga0157377_10279995
218 Ga0209758_1005583
219 Ga0207647_10087494
220 Ga0207699_10136127
221 Ga0207693_10275803
222 Ga0207700_10014709
223 Ga0207678_10215686
224 Ga0207702_10168509
225 Ga0207676_10182932
226 Ga0207675_100378841
227 Ga0207683_10169245
228 Ga0207428_10026234
229 Ga0307515_10000088
230 Ga0307512_10108828
231 Ga0307513_10013847
232 Ga0307513_10089989
233 Ga0307408_100201140
234 Ga0307508_10081652
235 Ga0307516_10001837
236 Ga0307516_10006978
237 Ga0307405_10138134
238 Ga0307413_10008474
239 Ga0307406_10021344
240 Ga0307406_10272087
241 Ga0307409_100158269
242 Ga0307416_100071772
243 Ga0307416_100126567
244 Ga0307415_100012281
245 Ga0307415_100152683
246 Ga0307415_100228990
247 Ga0395899_0011320
248 Ga0395900_0245919
249 Ga0395898_0101512
250 Ga0395898_0428192
251 Ga0395901_0041833
252 Ga0436363_1099470
253 Ga0451853_1587802
254 Ga0439449_0001172
255 Ga0466969_0007800
256 Ga0466969_0008743
257 Ga0466969_0052338
258 Ga0466961_0041338
259 Ga0466971_0000455
260 Ga0466971_0012856
261 Ga0466970_0004532
262 Ga0466957_0242013
263 Ga0466959_0016932
264 Ga0466959_0071273
265 Ga0466967_0094670
266 Ga0466967_0267574
267 Ga0495627_017660
268 Ga0495651_0002523
269 Ga0495653_0009593
270 Ga0495582_0027688
271 Ga0495664_0298304
272 Ga0495628_0066673
273 Ga0495652_0004699
274 Ga0495665_0001398
275 Ga0495586_0009410
276 Ga0495587_0003758
277 Ga0495645_0000579
278 Ga0495645_0041393
279 Ga0495667_0001862
280 Ga0495634_0176236
281 Ga0495635_0001268
282 Ga0495657_0017906
283 Ga0495646_0013110
284 Ga0495670_0019472
285 Ga0495670_0041232
286 Ga0495600_0017016
287 Ga0495600_0046919
288 Ga0495581_0027433
289 Ga0495636_0115787
290 Ga0495675_0025237
291 Ga0495675_0165264
292 Ga0496100_0000455
293 Ga0496101_0002162
294 Ga0496102_0003798
295 Ga0496102_0334372
296 Ga0496103_0002365
297 Ga0496104_0157141
298 Ga0496105_0016690
299 Ga0496105_0048513
300 Ga0496106_0002488
301 Ga0496106_0186134
302 Ga0496107_0011035
303 Ga0496110_0018778
304 Ga0496110_0028477
305 Ga0496111_0014146
306 Ga0496114_0004096
307 Ga0496115_0002415
308 Ga0496117_0004661
309 Ga0496118_0043220
310 Ga0496126_0155174
311 Ga0501306_002261
312 Ga0501317_000254
313 Ga0501320_006967
314 Ga0501321_008888
315 Ga0501323_000740
316 Ga0501323_011440
317 Ga0501032_0020065
318 Ga0501034_0006763
319 Ga0501034_0041401
320 Ga0501034_0114480
321 Ga0501034_0322681
322 Ga0501036_0062636
323 Ga0501038_0042188
324 Ga0501038_0063531
325 Ga0501039_0043749
326 Ga0501040_0050075
327 Ga0501042_0020376
328 Ga0501043_0148003
329 Ga0501046_0050682
330 Ga0501047_0078628
331 Ga0501047_0103539
332 Ga0501047_0345499
333 Ga0501048_0049065
334 Ga0501068_0032214
335 Ga0501069_0005929
336 Ga0501070_0000443
337 Ga0501070_0060561
338 Ga0501071_0004381
339 Ga0501071_0005879
340 Ga0501072_0000317
341 Ga0501074_0021723
342 Ga0501079_0025427
343 Ga0501080_0000038
344 Ga0501080_0014852
345 Ga0501080_0074055
346 Ga0501035_0033883
347 Ga0501044_0044987
348 Ga0501045_0039218
349 nmdc:mga05p37_70969_c1
350 Ga0495601_0018602
351 Ga0495612_0001178
352 Ga0500635_0000004
353 Ga0500568_0006094
354 Ga0500568_0013886
355 Ga0501084_0030007
356 Ga0466962_0000347
357 Ga0466962_0004198
358 2554258593
359 2623587737
360 2643892766
361 2643897873
362 2643962215
363 2644409018
364 2644436371
365 2731908763
366 2795780052
367 2799184792
368 2808841259
369 2808919941
370 2811848263
371 2858868642
372 2861521364
373 2887445908
374 2887483675
375 2919468661
376 2946034318
377 2946050870
378 2966603296
379 2996221800
380 8003857011
381 8004023426
382 8004026490
383 8025535124
384 8055418612

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02350

Epimerase_2

UDP-N-acetylglucosamine 2-epimerase

27

363

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
8sy0-assembly1.cif.gz_A x-ray crystal structure of udp- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27 in complex with its product udp-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at ph 9 0.9006 2 348
8sy0-assembly1.cif.gz_A x-ray crystal structure of udp- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27 in complex with its product udp-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at ph 9 0.8909 2 348
8sye-assembly1.cif.gz_A x-ray crystal structure of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27, d98n variant in the presence of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid and udp at ph 6 0.8876 2 349
4nes-assembly1.cif.gz_A-2 crystal structure of methanocaldococcus jannaschii udp-glcnac 2-epimerase in complex with udp-glcnac and udp 0.882 1 349
8sye-assembly1.cif.gz_A x-ray crystal structure of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27, d98n variant in the presence of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid and udp at ph 6 0.8804 2 349
ID Description Score Start End Superfamily
af_Q58899_2_184_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9478 1 183 3.40.50.2000
af_Q58899_2_184_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9428 1 183 3.40.50.2000
5enzB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9388 2 173 3.40.50.2000
af_P27828_2_186_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9324 3 183 3.40.50.2000
4hwgA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9147 1 184 3.40.50.2000
ID Description Score Start End GO Terms
AF-A0A661WXV6-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.9799 1 141 GO:0008761
AF-A0A7W1L2B4-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase 0.9786 1 155 GO:0008761
AF-A0A3C1Z1U7-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.9771 2 118 GO:0008761
AF-A0A381TNY8-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase domain-containing protein 0.9768 19 146 GO:0008761
AF-A0A5S9IEJ5-F1-model_v4 deleted 0.9767 1 138

Map