F294461
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 191 | 80 | 380 | 167 |
Family's Representative Sequence
| Representative Sequence | 3300044712|Ga0453684_0892877|Ga0453684_0892877_113_604 |
| Length | 163 |
| Sequence | MSTAAPFVAGKLTGKYLTVVLAEESYGINVLKIREIIRLQKITLVPQLPGHMKGVINLRGRVIPIMDLRLKFGFKAELTERTCIVVIRVELPAGQVQMGVIVDSVEEVVNLNDAAIESTPDFGARIDTSYLLGMAKVNGQVKTLLDIDRVITGDAGSVALPAA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 2 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 3 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 4 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 6 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 7 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 9 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 10 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 11 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 13 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 14 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 15 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 16 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 17 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 18 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 19 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 20 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 21 | 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Metagenome | Rhizosphere |
| 22 | 3300028558 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG | Metagenome | Rhizosphere |
| 23 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 24 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 25 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 26 | 3300028653 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG | Metagenome | Rhizosphere |
| 27 | 3300028654 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG | Metagenome | Rhizosphere |
| 28 | 3300028666 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG | Metagenome | Rhizosphere |
| 29 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 30 | 3300029957 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG | Metagenome | Rhizosphere |
| 31 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 32 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 33 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 34 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 35 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 36 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 37 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 38 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 39 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 40 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 41 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 42 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 43 | 3300031616 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM | Metagenome | Unclassified |
| 44 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 45 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 46 | 3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Metagenome | Unclassified |
| 47 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 48 | 3300035115 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 | Metagenome | Rhizosphere |
| 49 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 50 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 51 | 3300041486 | Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG | Metagenome | Rhizoplane |
| 52 | 3300042001 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 | Metagenome | Rhizosphere |
| 53 | 3300042004 | Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 | Metagenome | Rhizosphere |
| 54 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 55 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 56 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 57 | 3300049527 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J4_B_0_control (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 58 | 3300049568 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 59 | 3300049569 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 60 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 61 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 62 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 63 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 64 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 65 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 66 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 67 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 68 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 69 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 70 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 71 | 3300049584 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 | Metagenome | Rhizosphere |
| 72 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 73 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 74 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 75 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 76 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 77 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 78 | 3300053146 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere | Metagenome | Endosphere |
| 79 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 80 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 99.48 |
| Metatranscriptomes | 0.52 |
| Isolates | 0 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.57 |
| Nodule | 0 |
| Rhizoplane | 0.52 |
| Rhizosphere | 93.19 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 13.09 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0453684_0892877 | 3300044712 | Bacteria | 952 |
| 2 | rootH2_10019393 | 3300003320 | Bacteria | 3696 |
| 3 | rootH2_10136642 | 3300003320 | Bacteria | 3812 |
| 4 | rootL2_10110661 | 3300003322 | Bacteria | 4000 |
| 5 | rootL2_10134886 | 3300003322 | Bacteria | 4998 |
| 6 | rootL2_10180302 | 3300003322 | Bacteria | 2577 |
| 7 | Ga0070658_10325920 | 3300005327 | Bacteria | 1312 |
| 8 | Ga0070683_100034944 | 3300005329 | Bacteria | 4594 |
| 9 | Ga0070680_100317895 | 3300005336 | Bacteria | 1321 |
| 10 | Ga0070662_101188993 | 3300005457 | Unclassified | 655 |
| 11 | Ga0070684_100032384 | 3300005535 | Bacteria | 4455 |
| 12 | Ga0068853_100169379 | 3300005539 | Bacteria | 1975 |
| 13 | Ga0068856_100107416 | 3300005614 | Bacteria | 2786 |
| 14 | Ga0070717_11407055 | 3300006028 | Unclassified | 633 |
| 15 | Ga0068865_100553809 | 3300006881 | Unclassified | 966 |
| 16 | Ga0105246_10777927 | 3300011119 | Unclassified | 847 |
| 17 | Ga0157374_10330706 | 3300013296 | Unclassified | 1511 |
| 18 | Ga0163163_10020350 | 3300014325 | Bacteria | 6248 |
| 19 | Ga0207705_10083930 | 3300025909 | Bacteria | 2325 |
| 20 | Ga0207705_10631343 | 3300025909 | Bacteria | 833 |
| 21 | Ga0207689_10815229 | 3300025942 | Unclassified | 788 |
| 22 | Ga0207639_10855469 | 3300026041 | Unclassified | 849 |
| 23 | Ga0207702_10446547 | 3300026078 | Unclassified | 1254 |
| 24 | Ga0207674_10563635 | 3300026116 | Bacteria | 1100 |
| 25 | Ga0265337_1005696 | 3300028556 | Bacteria | 4902 |
| 26 | Ga0265337_1026926 | 3300028556 | Bacteria | 1737 |
| 27 | Ga0265326_10031583 | 3300028558 | Unclassified | 1509 |
| 28 | Ga0265319_1000026 | 3300028563 | Bacteria | 141358 |
| 29 | Ga0265319_1007053 | 3300028563 | Bacteria | 5106 |
| 30 | Ga0265319_1017879 | 3300028563 | Bacteria | 2686 |
| 31 | Ga0265319_1031700 | 3300028563 | Unclassified | 1839 |
| 32 | Ga0265319_1072572 | 3300028563 | Bacteria | 1101 |
| 33 | Ga0265319_1151052 | 3300028563 | Bacteria | 719 |
| 34 | Ga0265334_10011997 | 3300028573 | Bacteria | 3640 |
| 35 | Ga0265318_10000548 | 3300028577 | Bacteria | 26669 |
| 36 | Ga0265318_10003289 | 3300028577 | Bacteria | 8210 |
| 37 | Ga0265318_10006654 | 3300028577 | Bacteria | 5303 |
| 38 | Ga0265318_10042259 | 3300028577 | Unclassified | 1730 |
| 39 | Ga0265318_10154956 | 3300028577 | Bacteria | 840 |
| 40 | Ga0265323_10000032 | 3300028653 | Bacteria | 76562 |
| 41 | Ga0265323_10001264 | 3300028653 | Bacteria | 12698 |
| 42 | Ga0265323_10007199 | 3300028653 | Bacteria | 4638 |
| 43 | Ga0265323_10012436 | 3300028653 | Unclassified | 3410 |
| 44 | Ga0265323_10024319 | 3300028653 | Bacteria | 2304 |
| 45 | Ga0265323_10024537 | 3300028653 | Bacteria | 2291 |
| 46 | Ga0265323_10039752 | 3300028653 | Bacteria | 1714 |
| 47 | Ga0265322_10000889 | 3300028654 | Bacteria | 10597 |
| 48 | Ga0265322_10013719 | 3300028654 | Bacteria | 2346 |
| 49 | Ga0265322_10050694 | 3300028654 | Bacteria | 1178 |
| 50 | Ga0265336_10001106 | 3300028666 | Bacteria | 12958 |
| 51 | Ga0265336_10002290 | 3300028666 | Bacteria | 7997 |
| 52 | Ga0265338_10021034 | 3300028800 | Bacteria | 6824 |
| 53 | Ga0265324_10000899 | 3300029957 | Bacteria | 18916 |
| 54 | Ga0265330_10023579 | 3300031235 | Bacteria | 2794 |
| 55 | Ga0265330_10027789 | 3300031235 | Bacteria | 2554 |
| 56 | Ga0265330_10032881 | 3300031235 | Bacteria | 2323 |
| 57 | Ga0265330_10047389 | 3300031235 | Bacteria | 1892 |
| 58 | Ga0265330_10202694 | 3300031235 | Bacteria | 839 |
| 59 | Ga0265332_10065320 | 3300031238 | Bacteria | 1554 |
| 60 | Ga0265332_10244619 | 3300031238 | Bacteria | 742 |
| 61 | Ga0265320_10000302 | 3300031240 | Bacteria | 40313 |
| 62 | Ga0265320_10002381 | 3300031240 | Bacteria | 13124 |
| 63 | Ga0265320_10004659 | 3300031240 | Bacteria | 8954 |
| 64 | Ga0265320_10007352 | 3300031240 | Bacteria | 6842 |
| 65 | Ga0265320_10013530 | 3300031240 | Bacteria | 4689 |
| 66 | Ga0265320_10040669 | 3300031240 | Bacteria | 2317 |
| 67 | Ga0265320_10072641 | 3300031240 | Unclassified | 1618 |
| 68 | Ga0265325_10226028 | 3300031241 | Bacteria | 855 |
| 69 | Ga0265329_10224910 | 3300031242 | Unclassified | 622 |
| 70 | Ga0265340_10105982 | 3300031247 | Bacteria | 1303 |
| 71 | Ga0265339_10044611 | 3300031249 | Bacteria | 2445 |
| 72 | Ga0265331_10007878 | 3300031250 | Bacteria | 6108 |
| 73 | Ga0265331_10009431 | 3300031250 | Bacteria | 5478 |
| 74 | Ga0265331_10066558 | 3300031250 | Bacteria | 1691 |
| 75 | Ga0265331_10208863 | 3300031250 | Bacteria | 879 |
| 76 | Ga0265327_10000023 | 3300031251 | Bacteria | 382703 |
| 77 | Ga0265327_10000585 | 3300031251 | Bacteria | 61215 |
| 78 | Ga0265327_10006212 | 3300031251 | Bacteria | 9632 |
| 79 | Ga0265327_10007667 | 3300031251 | Bacteria | 8265 |
| 80 | Ga0265316_10000564 | 3300031344 | Bacteria | 41400 |
| 81 | Ga0265316_10010176 | 3300031344 | Bacteria | 8589 |
| 82 | Ga0265316_10021018 | 3300031344 | Bacteria | 5538 |
| 83 | Ga0265316_10042967 | 3300031344 | Bacteria | 3608 |
| 84 | Ga0265316_10078028 | 3300031344 | Bacteria | 2543 |
| 85 | Ga0265316_10132052 | 3300031344 | Unclassified | 1880 |
| 86 | Ga0265316_10148705 | 3300031344 | Bacteria | 1755 |
| 87 | Ga0265316_10156200 | 3300031344 | Bacteria | 1707 |
| 88 | Ga0307509_10329328 | 3300031507 | Bacteria | 1260 |
| 89 | Ga0265313_10001025 | 3300031595 | Bacteria | 27218 |
| 90 | Ga0265313_10001253 | 3300031595 | Bacteria | 24176 |
| 91 | Ga0265313_10001418 | 3300031595 | Bacteria | 22434 |
| 92 | Ga0265313_10010477 | 3300031595 | Bacteria | 5855 |
| 93 | Ga0307508_10000031 | 3300031616 | Bacteria | 163301 |
| 94 | Ga0307508_10000513 | 3300031616 | Bacteria | 46447 |
| 95 | Ga0265314_10001815 | 3300031711 | Bacteria | 23013 |
| 96 | Ga0265314_10002816 | 3300031711 | Bacteria | 17347 |
| 97 | Ga0265314_10004607 | 3300031711 | Bacteria | 12717 |
| 98 | Ga0265314_10005049 | 3300031711 | Bacteria | 12031 |
| 99 | Ga0265314_10007052 | 3300031711 | Bacteria | 9809 |
| 100 | Ga0265314_10451734 | 3300031711 | Bacteria | 684 |
| 101 | Ga0265342_10006588 | 3300031712 | Bacteria | 8635 |
| 102 | Ga0265342_10007553 | 3300031712 | Bacteria | 7941 |
| 103 | Ga0265342_10104805 | 3300031712 | Bacteria | 1607 |
| 104 | Ga0265342_10236037 | 3300031712 | Unclassified | 980 |
| 105 | Ga0307516_10601572 | 3300031730 | Bacteria | 754 |
| 106 | Ga0307414_10400068 | 3300032004 | Bacteria | 1193 |
| 107 | Ga0307414_10486123 | 3300032004 | Bacteria | 1090 |
| 108 | Ga0373941_0338636 | 3300035115 | Bacteria | 609 |
| 109 | Ga0373935_0181343 | 3300035692 | Bacteria | 1446 |
| 110 | Ga0373933_0102875 | 3300035724 | Bacteria | 1774 |
| 111 | Ga0451807_2435832 | 3300041486 | Unclassified | 856 |
| 112 | Ga0439441_018286 | 3300042001 | Bacteria | 1266 |
| 113 | Ga0439445_0002125 | 3300042004 | Bacteria | 4383 |
| 114 | Ga0439445_0022670 | 3300042004 | Bacteria | 1585 |
| 115 | Ga0451577_0043081 | 3300042876 | Bacteria | 4044 |
| 116 | Ga0451577_0326331 | 3300042876 | Unclassified | 1392 |
| 117 | Ga0451577_0566538 | 3300042876 | Unclassified | 1031 |
| 118 | Ga0451577_1045056 | 3300042876 | Bacteria | 732 |
| 119 | Ga0453683_0000979 | 3300044673 | Bacteria | 26963 |
| 120 | Ga0453683_0716154 | 3300044673 | Unclassified | 656 |
| 121 | Ga0453684_0000001 | 3300044712 | Bacteria | 2623166 |
| 122 | Ga0453684_0018593 | 3300044712 | Bacteria | 10653 |
| 123 | Ga0453684_0071821 | 3300044712 | Bacteria | 4373 |
| 124 | Ga0453684_0120728 | 3300044712 | Bacteria | 3165 |
| 125 | Ga0453684_0232192 | 3300044712 | Bacteria | 2129 |
| 126 | Ga0453684_0309090 | 3300044712 | Unclassified | 1794 |
| 127 | Ga0453684_0753442 | 3300044712 | Unclassified | 1054 |
| 128 | Ga0453684_0930372 | 3300044712 | Bacteria | 929 |
| 129 | Ga0451576_0002023 | 3300045051 | Bacteria | 32041 |
| 130 | Ga0451576_0007131 | 3300045051 | Bacteria | 13492 |
| 131 | Ga0451576_0015482 | 3300045051 | Bacteria | 8446 |
| 132 | Ga0451576_0034911 | 3300045051 | Bacteria | 5338 |
| 133 | Ga0451576_0183637 | 3300045051 | Bacteria | 2184 |
| 134 | Ga0451576_0550455 | 3300045051 | Bacteria | 1212 |
| 135 | Ga0451576_0615056 | 3300045051 | Unclassified | 1142 |
| 136 | Ga0451576_1684066 | 3300045051 | Unclassified | 657 |
| 137 | Ga0501311_064149 | 3300049527 | Bacteria | 599 |
| 138 | Ga0501031_0049037 | 3300049568 | Bacteria | 2751 |
| 139 | Ga0501031_0190986 | 3300049568 | Bacteria | 1337 |
| 140 | Ga0501032_0001026 | 3300049569 | Bacteria | 22440 |
| 141 | Ga0501032_0007453 | 3300049569 | Bacteria | 7990 |
| 142 | Ga0501032_0011375 | 3300049569 | Bacteria | 6391 |
| 143 | Ga0501032_0232368 | 3300049569 | Bacteria | 1199 |
| 144 | Ga0501033_0001898 | 3300049570 | Bacteria | 18175 |
| 145 | Ga0501033_0009641 | 3300049570 | Bacteria | 7430 |
| 146 | Ga0501034_0034780 | 3300049571 | Bacteria | 5109 |
| 147 | Ga0501034_0221499 | 3300049571 | Bacteria | 1844 |
| 148 | Ga0501034_0720871 | 3300049571 | Bacteria | 894 |
| 149 | Ga0501036_0216080 | 3300049572 | Bacteria | 1610 |
| 150 | Ga0501037_0031784 | 3300049573 | Bacteria | 3897 |
| 151 | Ga0501038_0004098 | 3300049574 | Bacteria | 13560 |
| 152 | Ga0501038_0004142 | 3300049574 | Bacteria | 13493 |
| 153 | Ga0501038_0924507 | 3300049574 | Bacteria | 643 |
| 154 | Ga0501039_0011075 | 3300049575 | Bacteria | 6875 |
| 155 | Ga0501039_0011771 | 3300049575 | Bacteria | 6663 |
| 156 | Ga0501039_0883268 | 3300049575 | Bacteria | 696 |
| 157 | Ga0501042_0013612 | 3300049578 | Bacteria | 5539 |
| 158 | Ga0501042_0266273 | 3300049578 | Bacteria | 1237 |
| 159 | Ga0501043_0066667 | 3300049579 | Bacteria | 2827 |
| 160 | Ga0501043_0188522 | 3300049579 | Bacteria | 1604 |
| 161 | Ga0501046_0008008 | 3300049580 | Bacteria | 9235 |
| 162 | Ga0501046_0028621 | 3300049580 | Bacteria | 4536 |
| 163 | Ga0501046_0046242 | 3300049580 | Bacteria | 3455 |
| 164 | Ga0501046_0131130 | 3300049580 | Bacteria | 1901 |
| 165 | Ga0501046_0137852 | 3300049580 | Bacteria | 1847 |
| 166 | Ga0501047_0006836 | 3300049581 | Bacteria | 10719 |
| 167 | Ga0501047_0040278 | 3300049581 | Bacteria | 4518 |
| 168 | Ga0501047_0046373 | 3300049581 | Bacteria | 4200 |
| 169 | Ga0501047_0109536 | 3300049581 | Bacteria | 2644 |
| 170 | Ga0501047_0264659 | 3300049581 | Bacteria | 1566 |
| 171 | Ga0501048_0000567 | 3300049582 | Bacteria | 26216 |
| 172 | Ga0501048_0133310 | 3300049582 | Bacteria | 1755 |
| 173 | Ga0501068_0028672 | 3300049584 | Bacteria | 3294 |
| 174 | Ga0501073_0120430 | 3300049589 | Bacteria | 1819 |
| 175 | Ga0501080_0211898 | 3300049742 | Bacteria | 1775 |
| 176 | Ga0501080_0434691 | 3300049742 | Bacteria | 1178 |
| 177 | Ga0501083_0013231 | 3300049744 | Bacteria | 5767 |
| 178 | Ga0501083_0049643 | 3300049744 | Bacteria | 2828 |
| 179 | Ga0501083_0060635 | 3300049744 | Bacteria | 2527 |
| 180 | Ga0501035_0011715 | 3300049822 | Bacteria | 8123 |
| 181 | Ga0501035_0021512 | 3300049822 | Bacteria | 5929 |
| 182 | Ga0501035_0021936 | 3300049822 | Bacteria | 5867 |
| 183 | Ga0501035_0343855 | 3300049822 | Bacteria | 1249 |
| 184 | Ga0501044_0000120 | 3300049823 | Bacteria | 94401 |
| 185 | Ga0501044_0021440 | 3300049823 | Bacteria | 6891 |
| 186 | Ga0501044_0088459 | 3300049823 | Bacteria | 3127 |
| 187 | Ga0500568_0017259 | 3300053139 | Bacteria | 3190 |
| 188 | Ga0500588_0147872 | 3300053146 | Bacteria | 848 |
| 189 | Ga0500622_0205643 | 3300053156 | Bacteria | 892 |
| 190 | Ga0501082_0376928 | 3300060353 | Unclassified | 1238 |
| 191 | Ga0453684_0892877 | |||
| 192 | rootH2_10019393 | |||
| 193 | rootH2_10136642 | |||
| 194 | rootL2_10110661 | |||
| 195 | rootL2_10134886 | |||
| 196 | rootL2_10180302 | |||
| 197 | Ga0070658_10325920 | |||
| 198 | Ga0070683_100034944 | |||
| 199 | Ga0070680_100317895 | |||
| 200 | Ga0070662_101188993 | |||
| 201 | Ga0070684_100032384 | |||
| 202 | Ga0068853_100169379 | |||
| 203 | Ga0068856_100107416 | |||
| 204 | Ga0070717_11407055 | |||
| 205 | Ga0068865_100553809 | |||
| 206 | Ga0105246_10777927 | |||
| 207 | Ga0157374_10330706 | |||
| 208 | Ga0163163_10020350 | |||
| 209 | Ga0207705_10083930 | |||
| 210 | Ga0207705_10631343 | |||
| 211 | Ga0207689_10815229 | |||
| 212 | Ga0207639_10855469 | |||
| 213 | Ga0207702_10446547 | |||
| 214 | Ga0207674_10563635 | |||
| 215 | Ga0265337_1005696 | |||
| 216 | Ga0265337_1026926 | |||
| 217 | Ga0265326_10031583 | |||
| 218 | Ga0265319_1000026 | |||
| 219 | Ga0265319_1007053 | |||
| 220 | Ga0265319_1017879 | |||
| 221 | Ga0265319_1031700 | |||
| 222 | Ga0265319_1072572 | |||
| 223 | Ga0265319_1151052 | |||
| 224 | Ga0265334_10011997 | |||
| 225 | Ga0265318_10000548 | |||
| 226 | Ga0265318_10003289 | |||
| 227 | Ga0265318_10006654 | |||
| 228 | Ga0265318_10042259 | |||
| 229 | Ga0265318_10154956 | |||
| 230 | Ga0265323_10000032 | |||
| 231 | Ga0265323_10001264 | |||
| 232 | Ga0265323_10007199 | |||
| 233 | Ga0265323_10012436 | |||
| 234 | Ga0265323_10024319 | |||
| 235 | Ga0265323_10024537 | |||
| 236 | Ga0265323_10039752 | |||
| 237 | Ga0265322_10000889 | |||
| 238 | Ga0265322_10013719 | |||
| 239 | Ga0265322_10050694 | |||
| 240 | Ga0265336_10001106 | |||
| 241 | Ga0265336_10002290 | |||
| 242 | Ga0265338_10021034 | |||
| 243 | Ga0265324_10000899 | |||
| 244 | Ga0265330_10023579 | |||
| 245 | Ga0265330_10027789 | |||
| 246 | Ga0265330_10032881 | |||
| 247 | Ga0265330_10047389 | |||
| 248 | Ga0265330_10202694 | |||
| 249 | Ga0265332_10065320 | |||
| 250 | Ga0265332_10244619 | |||
| 251 | Ga0265320_10000302 | |||
| 252 | Ga0265320_10002381 | |||
| 253 | Ga0265320_10004659 | |||
| 254 | Ga0265320_10007352 | |||
| 255 | Ga0265320_10013530 | |||
| 256 | Ga0265320_10040669 | |||
| 257 | Ga0265320_10072641 | |||
| 258 | Ga0265325_10226028 | |||
| 259 | Ga0265329_10224910 | |||
| 260 | Ga0265340_10105982 | |||
| 261 | Ga0265339_10044611 | |||
| 262 | Ga0265331_10007878 | |||
| 263 | Ga0265331_10009431 | |||
| 264 | Ga0265331_10066558 | |||
| 265 | Ga0265331_10208863 | |||
| 266 | Ga0265327_10000023 | |||
| 267 | Ga0265327_10000585 | |||
| 268 | Ga0265327_10006212 | |||
| 269 | Ga0265327_10007667 | |||
| 270 | Ga0265316_10000564 | |||
| 271 | Ga0265316_10010176 | |||
| 272 | Ga0265316_10021018 | |||
| 273 | Ga0265316_10042967 | |||
| 274 | Ga0265316_10078028 | |||
| 275 | Ga0265316_10132052 | |||
| 276 | Ga0265316_10148705 | |||
| 277 | Ga0265316_10156200 | |||
| 278 | Ga0307509_10329328 | |||
| 279 | Ga0265313_10001025 | |||
| 280 | Ga0265313_10001253 | |||
| 281 | Ga0265313_10001418 | |||
| 282 | Ga0265313_10010477 | |||
| 283 | Ga0307508_10000031 | |||
| 284 | Ga0307508_10000513 | |||
| 285 | Ga0265314_10001815 | |||
| 286 | Ga0265314_10002816 | |||
| 287 | Ga0265314_10004607 | |||
| 288 | Ga0265314_10005049 | |||
| 289 | Ga0265314_10007052 | |||
| 290 | Ga0265314_10451734 | |||
| 291 | Ga0265342_10006588 | |||
| 292 | Ga0265342_10007553 | |||
| 293 | Ga0265342_10104805 | |||
| 294 | Ga0265342_10236037 | |||
| 295 | Ga0307516_10601572 | |||
| 296 | Ga0307414_10400068 | |||
| 297 | Ga0307414_10486123 | |||
| 298 | Ga0373941_0338636 | |||
| 299 | Ga0373935_0181343 | |||
| 300 | Ga0373933_0102875 | |||
| 301 | Ga0451807_2435832 | |||
| 302 | Ga0439441_018286 | |||
| 303 | Ga0439445_0002125 | |||
| 304 | Ga0439445_0022670 | |||
| 305 | Ga0451577_0043081 | |||
| 306 | Ga0451577_0326331 | |||
| 307 | Ga0451577_0566538 | |||
| 308 | Ga0451577_1045056 | |||
| 309 | Ga0453683_0000979 | |||
| 310 | Ga0453683_0716154 | |||
| 311 | Ga0453684_0000001 | |||
| 312 | Ga0453684_0018593 | |||
| 313 | Ga0453684_0071821 | |||
| 314 | Ga0453684_0120728 | |||
| 315 | Ga0453684_0232192 | |||
| 316 | Ga0453684_0309090 | |||
| 317 | Ga0453684_0753442 | |||
| 318 | Ga0453684_0930372 | |||
| 319 | Ga0451576_0002023 | |||
| 320 | Ga0451576_0007131 | |||
| 321 | Ga0451576_0015482 | |||
| 322 | Ga0451576_0034911 | |||
| 323 | Ga0451576_0183637 | |||
| 324 | Ga0451576_0550455 | |||
| 325 | Ga0451576_0615056 | |||
| 326 | Ga0451576_1684066 | |||
| 327 | Ga0501311_064149 | |||
| 328 | Ga0501031_0049037 | |||
| 329 | Ga0501031_0190986 | |||
| 330 | Ga0501032_0001026 | |||
| 331 | Ga0501032_0007453 | |||
| 332 | Ga0501032_0011375 | |||
| 333 | Ga0501032_0232368 | |||
| 334 | Ga0501033_0001898 | |||
| 335 | Ga0501033_0009641 | |||
| 336 | Ga0501034_0034780 | |||
| 337 | Ga0501034_0221499 | |||
| 338 | Ga0501034_0720871 | |||
| 339 | Ga0501036_0216080 | |||
| 340 | Ga0501037_0031784 | |||
| 341 | Ga0501038_0004098 | |||
| 342 | Ga0501038_0004142 | |||
| 343 | Ga0501038_0924507 | |||
| 344 | Ga0501039_0011075 | |||
| 345 | Ga0501039_0011771 | |||
| 346 | Ga0501039_0883268 | |||
| 347 | Ga0501042_0013612 | |||
| 348 | Ga0501042_0266273 | |||
| 349 | Ga0501043_0066667 | |||
| 350 | Ga0501043_0188522 | |||
| 351 | Ga0501046_0008008 | |||
| 352 | Ga0501046_0028621 | |||
| 353 | Ga0501046_0046242 | |||
| 354 | Ga0501046_0131130 | |||
| 355 | Ga0501046_0137852 | |||
| 356 | Ga0501047_0006836 | |||
| 357 | Ga0501047_0040278 | |||
| 358 | Ga0501047_0046373 | |||
| 359 | Ga0501047_0109536 | |||
| 360 | Ga0501047_0264659 | |||
| 361 | Ga0501048_0000567 | |||
| 362 | Ga0501048_0133310 | |||
| 363 | Ga0501068_0028672 | |||
| 364 | Ga0501073_0120430 | |||
| 365 | Ga0501080_0211898 | |||
| 366 | Ga0501080_0434691 | |||
| 367 | Ga0501083_0013231 | |||
| 368 | Ga0501083_0049643 | |||
| 369 | Ga0501083_0060635 | |||
| 370 | Ga0501035_0011715 | |||
| 371 | Ga0501035_0021512 | |||
| 372 | Ga0501035_0021936 | |||
| 373 | Ga0501035_0343855 | |||
| 374 | Ga0501044_0000120 | |||
| 375 | Ga0501044_0021440 | |||
| 376 | Ga0501044_0088459 | |||
| 377 | Ga0500568_0017259 | |||
| 378 | Ga0500588_0147872 | |||
| 379 | Ga0500622_0205643 | |||
| 380 | Ga0501082_0376928 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2qdl-assembly2.cif.gz_B | crystal structure of scaffolding protein ttchew from thermoanaerobacter tengcongensis | 0.9064 | 15 | 153 |
| 8c5v-assembly1.cif.gz_H | chemotaxis core signalling unit from e protein lysed e. coli cells | 0.8927 | 15 | 158 |
| 2qdl-assembly1.cif.gz_A | crystal structure of scaffolding protein ttchew from thermoanaerobacter tengcongensis | 0.8833 | 15 | 158 |
| 4jpb-assembly1.cif.gz_W | the structure of a ternary complex between chea domains p4 and p5 with chew and with an unzipped fragment of tm14, a chemoreceptor analog from thermotoga maritima. | 0.8796 | 16 | 162 |
| 8c5v-assembly1.cif.gz_H | chemotaxis core signalling unit from e protein lysed e. coli cells | 0.875 | 15 | 158 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 2qdlB02 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 | 0.9273 | 36 | 106 | 2.40.50.180 |
| 2ch4W02 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 | 0.8565 | 35 | 106 | 2.40.50.180 |
| af_P0A964_36_100_2.40.50.180 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 | 0.8462 | 35 | 105 | 2.40.50.180 |
| af_P0A964_36_100_2.40.50.180 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);CheA-289, Domain 4 | 0.834 | 35 | 105 | 2.40.50.180 |
| 2qdlB01 | Mainly Beta;Roll;SH3 type barrels.;SH3 Domains | 0.7824 | 16 | 148 | 2.30.30.40 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A1G1A5I5-F1-model_v4 | Chemotaxis protein CheW | 0.968 | 14 | 154 |
GO:0005829
GO:0006935 GO:0007165 |
| AF-A0A3A5AT49-F1-model_v4 | Response regulator | 0.9665 | 15 | 164 |
GO:0000160
GO:0005829 GO:0006935 |
| AF-A0A7X7U007-F1-model_v4 | Purine-binding chemotaxis protein CheW | 0.9663 | 14 | 154 |
GO:0005829
GO:0006935 GO:0007165 |
| AF-A0A660V496-F1-model_v4 | Chemotaxis protein CheW | 0.9661 | 14 | 154 |
GO:0005829
GO:0006935 GO:0007165 |
| AF-A0A660UIQ6-F1-model_v4 | Chemotaxis protein CheW | 0.9652 | 14 | 156 |
GO:0005829
GO:0006935 GO:0007165 |