F293894

General Info

Members Datasets Scaffolds Average Seq Length
191 134 382 211

Family's Representative Sequence

Representative Sequence 3300006914|Ga0075436_100002815|Ga0075436_1000028154
Length 254
Sequence VFFMCSVSTSLTASRCSFGSLPLKNRGNYLIAGVSKNFLSLLHTMSTRLLLADDHALVRQGLKAFLERQEFQVVSDASDGQEALRMAAKTQPDIAILDISMPVLNGIDAARELKKSSPKTKVILLTKHEEDQYVTEALRAGVRGYVLKSQVANDLVYAIREVCRGRVYLSPSVSRAVVDGYLSKVDVPPDPLSVRERQVLQLVGEGKSTKDVALQLGISVKTAESHRARLMKKLDIHETASLVRYAIRCGLIQA

Samples

Sample ID Description Type Environment
1 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
2 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
3 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
4 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
5 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
6 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
10 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
11 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
12 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
13 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
14 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
22 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
28 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300024227 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 Metagenome Rhizosphere
31 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
32 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
34 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
35 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
47 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
48 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
52 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
57 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
62 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
63 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
64 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
65 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
70 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
71 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
72 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
73 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
74 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
75 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
76 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
77 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
78 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
79 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
80 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
81 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
82 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
83 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
84 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
85 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
88 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
89 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
90 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
91 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
92 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
93 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
94 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
95 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
96 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
108 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
109 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
110 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
111 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
112 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
113 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
118 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
119 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
120 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
121 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
122 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
123 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
124 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
125 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
126 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
127 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
128 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
129 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
130 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
131 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
132 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
133 2643221545 Caulobacter sp. Root1455 Isolate Unclassified
134 2643221691 Caulobacter sp. Root487D2Y Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.95
Metatranscriptomes 0
Isolates 1.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.95
Nodule 0
Rhizoplane 2.62
Rhizosphere 82.72
Stem 0
Stem Tuber 0
Unclassified 24.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0075436_100002815 3300006914 Bacteria 11914
2 Ga0055537_1001946 3300003773 Bacteria 7377
3 Ga0055524_1006990 3300003775 Bacteria 4847
4 Ga0055524_1011020 3300003775 Bacteria 3559
5 Ga0055528_1005965 3300003790 Bacteria 5580
6 Ga0070708_100030885 3300005445 Bacteria 4634
7 Ga0070708_100367955 3300005445 Bacteria 1355
8 Ga0070707_100106535 3300005468 Unclassified 2719
9 Ga0070707_100249494 3300005468 Bacteria 1727
10 Ga0070707_100772511 3300005468 Unclassified 924
11 Ga0070698_100024278 3300005471 Bacteria 6326
12 Ga0068853_100732699 3300005539 Unclassified 944
13 Ga0070695_100310907 3300005545 Unclassified 1168
14 Ga0070696_100108924 3300005546 Bacteria 1993
15 Ga0070696_100690049 3300005546 Bacteria 831
16 Ga0068855_101096405 3300005563 Bacteria 832
17 Ga0070702_100152052 3300005615 Bacteria 1487
18 Ga0068852_101283053 3300005616 Unclassified 754
19 Ga0068866_10175913 3300005718 Unclassified 1260
20 Ga0068861_101402758 3300005719 Bacteria 682
21 Ga0075428_100011593 3300006844 Bacteria 9807
22 Ga0075430_100005243 3300006846 Bacteria 10935
23 Ga0075431_100042528 3300006847 Bacteria 4687
24 Ga0075434_100057820 3300006871 Bacteria 3854
25 Ga0075429_100169697 3300006880 Bacteria 1911
26 Ga0075436_100003559 3300006914 Bacteria 10684
27 Ga0075436_100111336 3300006914 Unclassified 1911
28 Ga0075435_100012513 3300007076 Bacteria 6286
29 Ga0075435_100097328 3300007076 Bacteria 2435
30 Ga0075435_100125815 3300007076 Bacteria 2142
31 Ga0075435_100181602 3300007076 Unclassified 1778
32 Ga0099794_10002360 3300007265 Bacteria 6949
33 Ga0099794_10014204 3300007265 Unclassified 3484
34 Ga0099794_10022280 3300007265 Bacteria 2887
35 Ga0099794_10080020 3300007265 Unclassified 1610
36 Ga0099794_10099804 3300007265 Unclassified 1448
37 Ga0099794_10130980 3300007265 Bacteria 1266
38 Ga0105240_11281875 3300009093 Unclassified 773
39 Ga0111539_10008644 3300009094 Bacteria 12927
40 Ga0114129_10000568 3300009147 Bacteria 45423
41 Ga0114129_11067287 3300009147 Bacteria 1013
42 Ga0105238_10871393 3300009551 Bacteria 918
43 Ga0099796_10214771 3300010159 Unclassified 786
44 Ga0157378_10229813 3300013297 Bacteria 1767
45 Ga0213875_10012678 3300021388 Bacteria 4150
46 Ga0228598_1004983 3300024227 Bacteria 2792
47 Ga0209565_1000429 3300025263 Bacteria 33769
48 Ga0209673_1000895 3300025273 Bacteria 38370
49 Ga0209675_1037353 3300025291 Bacteria 1092
50 Ga0209758_1003960 3300025297 Bacteria 12847
51 Ga0209256_1000336 3300025299 Bacteria 78476
52 Ga0209256_1006963 3300025299 Bacteria 5760
53 Ga0207642_10370670 3300025899 Bacteria 850
54 Ga0207699_10364507 3300025906 Bacteria 1023
55 Ga0207695_10662868 3300025913 Unclassified 924
56 Ga0207665_10000233 3300025939 Bacteria 37930
57 Ga0207667_11306227 3300025949 Bacteria 702
58 Ga0207639_10614753 3300026041 Unclassified 1003
59 Ga0207675_101552709 3300026118 Bacteria 683
60 Ga0207698_10605745 3300026142 Bacteria 1080
61 Ga0209588_1000639 3300027671 Bacteria 8837
62 Ga0209588_1001794 3300027671 Bacteria 5701
63 Ga0209588_1004677 3300027671 Unclassified 3882
64 Ga0209588_1006160 3300027671 Unclassified 3472
65 Ga0209588_1020058 3300027671 Unclassified 2091
66 Ga0209588_1072470 3300027671 Bacteria 1113
67 Ga0209588_1078942 3300027671 Unclassified 1063
68 Ga0209974_10155180 3300027876 Bacteria 828
69 Ga0207428_10022609 3300027907 Bacteria 5303
70 Ga0265337_1072116 3300028556 Bacteria 948
71 Ga0265336_10035849 3300028666 Bacteria 1529
72 Ga0307515_10327490 3300028794 Bacteria 1193
73 Ga0265338_10044183 3300028800 Bacteria 4118
74 Ga0265324_10003490 3300029957 Bacteria 7443
75 Ga0265320_10040734 3300031240 Bacteria 2314
76 Ga0265327_10006622 3300031251 Bacteria 9206
77 Ga0265316_10010074 3300031344 Bacteria 8640
78 Ga0265316_10030251 3300031344 Bacteria 4441
79 Ga0265314_10035755 3300031711 Bacteria 3618
80 Ga0307413_10010254 3300031824 Bacteria 4534
81 Ga0307410_10310551 3300031852 Bacteria 1247
82 Ga0307409_100056180 3300031995 Bacteria 3043
83 Ga0307416_100191766 3300032002 Bacteria 1928
84 Ga0307411_10469085 3300032005 Bacteria 1057
85 Ga0307411_10673881 3300032005 Bacteria 898
86 Ga0373954_0260325 3300035118 Unclassified 854
87 Ga0373931_0035329 3300035691 Bacteria 2598
88 Ga0373927_0000138 3300035695 Bacteria 56472
89 Ga0373947_0052613 3300035725 Bacteria 2453
90 Ga0373925_0000126 3300037068 Bacteria 82922
91 Ga0373925_0742041 3300037068 Unclassified 809
92 Ga0395900_0993005 3300037418 Bacteria 760
93 Ga0436364_1263035 3300037853 Bacteria 11287
94 Ga0395901_0188218 3300038443 Bacteria 2165
95 Ga0451839_0142242 3300041496 Unclassified 706
96 Ga0451576_0376515 3300045051 Bacteria 1488
97 Ga0451576_0534218 3300045051 Bacteria 1232
98 Ga0495638_0000555 3300046460 Bacteria 42623
99 Ga0495638_0001091 3300046460 Bacteria 26433
100 Ga0495650_0000045 3300046471 Bacteria 346204
101 Ga0495650_0135313 3300046471 Bacteria 895
102 Ga0495606_0012023 3300046507 Bacteria 6989
103 Ga0495610_0000024 3300046512 Bacteria 304748
104 Ga0495610_0000029 3300046512 Bacteria 271137
105 Ga0495616_0051774 3300046513 Bacteria 2046
106 Ga0495620_0023556 3300046515 Bacteria 2941
107 Ga0495630_0023132 3300046517 Bacteria 4592
108 Ga0495632_0045735 3300046519 Bacteria 2179
109 Ga0495637_0002833 3300046520 Bacteria 9403
110 Ga0495643_0037634 3300046522 Bacteria 2653
111 Ga0495648_0008295 3300046524 Bacteria 8192
112 Ga0495654_0000010 3300046530 Bacteria 378481
113 Ga0495586_0285301 3300046535 Unclassified 945
114 Ga0495587_0012625 3300046536 Bacteria 5314
115 Ga0495625_0000408 3300046660 Bacteria 65240
116 Ga0495625_0000441 3300046660 Bacteria 62256
117 Ga0495625_0004689 3300046660 Bacteria 12833
118 Ga0495625_0218846 3300046660 Bacteria 1249
119 Ga0495660_0387972 3300046810 Bacteria 614
120 Ga0495604_0086859 3300047317 Unclassified 2331
121 Ga0495672_0003449 3300047320 Bacteria 13525
122 Ga0495681_0073806 3300047470 Bacteria 1540
123 Ga0495681_0123209 3300047470 Bacteria 1110
124 Ga0495686_0020208 3300047472 Bacteria 4442
125 Ga0496106_0010563 3300048909 Bacteria 6819
126 Ga0496106_0431428 3300048909 Bacteria 1059
127 Ga0496107_0000112 3300048910 Bacteria 39450
128 Ga0496115_0011232 3300048918 Bacteria 6710
129 Ga0496115_0076113 3300048918 Bacteria 2727
130 Ga0496121_0001796 3300048924 Bacteria 34668
131 Ga0496121_0129257 3300048924 Unclassified 1894
132 Ga0496126_0057922 3300048929 Unclassified 3495
133 Ga0501032_0094000 3300049569 Bacteria 1988
134 Ga0501032_0119063 3300049569 Unclassified 1746
135 Ga0501032_0598671 3300049569 Unclassified 701
136 Ga0501034_0093097 3300049571 Unclassified 3010
137 Ga0501036_0095856 3300049572 Bacteria 2508
138 Ga0501036_0126035 3300049572 Bacteria 2162
139 Ga0501037_0043608 3300049573 Unclassified 3296
140 Ga0501037_0123621 3300049573 Unclassified 1859
141 Ga0501038_0072429 3300049574 Unclassified 2920
142 Ga0501038_0152330 3300049574 Unclassified 1884
143 Ga0501039_0006557 3300049575 Bacteria 8837
144 Ga0501039_0013264 3300049575 Bacteria 6301
145 Ga0501041_0004510 3300049577 Bacteria 8072
146 Ga0501041_0046641 3300049577 Bacteria 2637
147 Ga0501042_0011782 3300049578 Bacteria 5908
148 Ga0501043_0069352 3300049579 Bacteria 2769
149 Ga0501046_0002251 3300049580 Bacteria 18205
150 Ga0501046_0045896 3300049580 Unclassified 3468
151 Ga0501046_0067577 3300049580 Unclassified 2784
152 Ga0501047_0073265 3300049581 Unclassified 3297
153 Ga0501070_0088113 3300049586 Unclassified 2569
154 Ga0501070_0218798 3300049586 Bacteria 1562
155 Ga0501071_0013503 3300049587 Bacteria 5568
156 Ga0501073_0162107 3300049589 Unclassified 1549
157 Ga0501074_0460186 3300049590 Unclassified 902
158 Ga0501238_002023 3300049671 Bacteria 2380
159 Ga0501079_0712717 3300049741 Unclassified 790
160 Ga0501081_0725706 3300049743 Unclassified 746
161 Ga0501035_0071717 3300049822 Unclassified 3066
162 Ga0501035_0508127 3300049822 Bacteria 991
163 Ga0501044_0005091 3300049823 Bacteria 14658
164 Ga0501044_0170068 3300049823 Unclassified 2151
165 nmdc:mga05p37_9344_c2 3300050507 Bacteria 7316
166 nmdc:mga09592_88833_c1 3300050508 Bacteria 2640
167 nmdc:mga0qj67_63862_c1 3300050509 Bacteria 2928
168 nmdc:mga06r32_41659_c1 3300050510 Bacteria 4364
169 nmdc:mga08y16_19776_c1 3300050511 Bacteria 7100
170 nmdc:mga0n895_179422_c1 3300050512 Bacteria 2149
171 nmdc:mga0n895_766526_c1 3300050512 Unclassified 957
172 nmdc:mga0rr50_1069080_c1 3300050513 Bacteria 687
173 nmdc:mga0rr50_110446_c1 3300050513 Bacteria 2175
174 nmdc:mga0rr50_2238_c1 3300050513 Bacteria 10860
175 nmdc:mga0rr50_406716_c1 3300050513 Bacteria 1150
176 nmdc:mga08x19_121573_c1 3300050514 Bacteria 1751
177 nmdc:mga08x19_4083_c1 3300050514 Bacteria 8663
178 nmdc:mga08x19_93131_c1 3300050514 Unclassified 1991
179 nmdc:mga0a205_4940_c1 3300050515 Bacteria 11997
180 Ga0500578_0071110 3300053086 Unclassified 2218
181 Ga0500555_048146 3300053103 Bacteria 1172
182 Ga0500556_0000870 3300053104 Bacteria 17074
183 Ga0500658_0000348 3300053134 Bacteria 20572
184 Ga0500658_0002657 3300053134 Bacteria 6877
185 Ga0500616_0225208 3300053153 Bacteria 815
186 Ga0500622_0021653 3300053156 Bacteria 3411
187 Ga0500645_001832 3300053730 Bacteria 10184
188 Ga0500645_012912 3300053730 Bacteria 2691
189 Ga0590075_084828 3300059424 Bacteria 821
190 2643746961 2643221545 Bacteria 5083237
191 2644507832 2643221691 Bacteria 5093099
192 Ga0075436_100002815
193 Ga0055537_1001946
194 Ga0055524_1006990
195 Ga0055524_1011020
196 Ga0055528_1005965
197 Ga0070708_100030885
198 Ga0070708_100367955
199 Ga0070707_100106535
200 Ga0070707_100249494
201 Ga0070707_100772511
202 Ga0070698_100024278
203 Ga0068853_100732699
204 Ga0070695_100310907
205 Ga0070696_100108924
206 Ga0070696_100690049
207 Ga0068855_101096405
208 Ga0070702_100152052
209 Ga0068852_101283053
210 Ga0068866_10175913
211 Ga0068861_101402758
212 Ga0075428_100011593
213 Ga0075430_100005243
214 Ga0075431_100042528
215 Ga0075434_100057820
216 Ga0075429_100169697
217 Ga0075436_100003559
218 Ga0075436_100111336
219 Ga0075435_100012513
220 Ga0075435_100097328
221 Ga0075435_100125815
222 Ga0075435_100181602
223 Ga0099794_10002360
224 Ga0099794_10014204
225 Ga0099794_10022280
226 Ga0099794_10080020
227 Ga0099794_10099804
228 Ga0099794_10130980
229 Ga0105240_11281875
230 Ga0111539_10008644
231 Ga0114129_10000568
232 Ga0114129_11067287
233 Ga0105238_10871393
234 Ga0099796_10214771
235 Ga0157378_10229813
236 Ga0213875_10012678
237 Ga0228598_1004983
238 Ga0209565_1000429
239 Ga0209673_1000895
240 Ga0209675_1037353
241 Ga0209758_1003960
242 Ga0209256_1000336
243 Ga0209256_1006963
244 Ga0207642_10370670
245 Ga0207699_10364507
246 Ga0207695_10662868
247 Ga0207665_10000233
248 Ga0207667_11306227
249 Ga0207639_10614753
250 Ga0207675_101552709
251 Ga0207698_10605745
252 Ga0209588_1000639
253 Ga0209588_1001794
254 Ga0209588_1004677
255 Ga0209588_1006160
256 Ga0209588_1020058
257 Ga0209588_1072470
258 Ga0209588_1078942
259 Ga0209974_10155180
260 Ga0207428_10022609
261 Ga0265337_1072116
262 Ga0265336_10035849
263 Ga0307515_10327490
264 Ga0265338_10044183
265 Ga0265324_10003490
266 Ga0265320_10040734
267 Ga0265327_10006622
268 Ga0265316_10010074
269 Ga0265316_10030251
270 Ga0265314_10035755
271 Ga0307413_10010254
272 Ga0307410_10310551
273 Ga0307409_100056180
274 Ga0307416_100191766
275 Ga0307411_10469085
276 Ga0307411_10673881
277 Ga0373954_0260325
278 Ga0373931_0035329
279 Ga0373927_0000138
280 Ga0373947_0052613
281 Ga0373925_0000126
282 Ga0373925_0742041
283 Ga0395900_0993005
284 Ga0436364_1263035
285 Ga0395901_0188218
286 Ga0451839_0142242
287 Ga0451576_0376515
288 Ga0451576_0534218
289 Ga0495638_0000555
290 Ga0495638_0001091
291 Ga0495650_0000045
292 Ga0495650_0135313
293 Ga0495606_0012023
294 Ga0495610_0000024
295 Ga0495610_0000029
296 Ga0495616_0051774
297 Ga0495620_0023556
298 Ga0495630_0023132
299 Ga0495632_0045735
300 Ga0495637_0002833
301 Ga0495643_0037634
302 Ga0495648_0008295
303 Ga0495654_0000010
304 Ga0495586_0285301
305 Ga0495587_0012625
306 Ga0495625_0000408
307 Ga0495625_0000441
308 Ga0495625_0004689
309 Ga0495625_0218846
310 Ga0495660_0387972
311 Ga0495604_0086859
312 Ga0495672_0003449
313 Ga0495681_0073806
314 Ga0495681_0123209
315 Ga0495686_0020208
316 Ga0496106_0010563
317 Ga0496106_0431428
318 Ga0496107_0000112
319 Ga0496115_0011232
320 Ga0496115_0076113
321 Ga0496121_0001796
322 Ga0496121_0129257
323 Ga0496126_0057922
324 Ga0501032_0094000
325 Ga0501032_0119063
326 Ga0501032_0598671
327 Ga0501034_0093097
328 Ga0501036_0095856
329 Ga0501036_0126035
330 Ga0501037_0043608
331 Ga0501037_0123621
332 Ga0501038_0072429
333 Ga0501038_0152330
334 Ga0501039_0006557
335 Ga0501039_0013264
336 Ga0501041_0004510
337 Ga0501041_0046641
338 Ga0501042_0011782
339 Ga0501043_0069352
340 Ga0501046_0002251
341 Ga0501046_0045896
342 Ga0501046_0067577
343 Ga0501047_0073265
344 Ga0501070_0088113
345 Ga0501070_0218798
346 Ga0501071_0013503
347 Ga0501073_0162107
348 Ga0501074_0460186
349 Ga0501238_002023
350 Ga0501079_0712717
351 Ga0501081_0725706
352 Ga0501035_0071717
353 Ga0501035_0508127
354 Ga0501044_0005091
355 Ga0501044_0170068
356 nmdc:mga05p37_9344_c2
357 nmdc:mga09592_88833_c1
358 nmdc:mga0qj67_63862_c1
359 nmdc:mga06r32_41659_c1
360 nmdc:mga08y16_19776_c1
361 nmdc:mga0n895_179422_c1
362 nmdc:mga0n895_766526_c1
363 nmdc:mga0rr50_1069080_c1
364 nmdc:mga0rr50_110446_c1
365 nmdc:mga0rr50_2238_c1
366 nmdc:mga0rr50_406716_c1
367 nmdc:mga08x19_121573_c1
368 nmdc:mga08x19_4083_c1
369 nmdc:mga08x19_93131_c1
370 nmdc:mga0a205_4940_c1
371 Ga0500578_0071110
372 Ga0500555_048146
373 Ga0500556_0000870
374 Ga0500658_0000348
375 Ga0500658_0002657
376 Ga0500616_0225208
377 Ga0500622_0021653
378 Ga0500645_001832
379 Ga0500645_012912
380 Ga0590075_084828
381 2643746961
382 2644507832

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

49

160

0.97

PF00196

GerE

Bacterial regulatory proteins, luxR family

190

246

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

191

234

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9581 144 208
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.9575 1 117
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.956 144 205
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9553 144 208
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9528 146 208
ID Description Score Start End Superfamily
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9657 148 204 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9638 148 204 1.10.10.10
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9575 1 117 3.40.50.2300
af_O53213_1064_1134_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9565 146 204 1.10.10.10
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9516 145 204 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1M5L313-F1-model_v4 Response regulator receiver domain-containing protein 0.959 2 117 GO:0000160
AF-A0A2P5P6G8-F1-model_v4 DNA-binding response regulator 0.9518 1 115 GO:0000160
GO:0003677
AF-A0A2V9V9Y3-F1-model_v4 Response regulatory domain-containing protein 0.9492 2 130 GO:0000160
AF-A0A1H3QWK1-F1-model_v4 Response regulator receiver domain-containing protein 0.9484 2 121 GO:0000160
AF-A0A321L366-F1-model_v4 Response regulatory domain-containing protein 0.9471 2 126 GO:0000160

Map