F292802

General Info

Members Datasets Scaffolds Average Seq Length
190 141 380 494

Family's Representative Sequence

Representative Sequence 3300035724|Ga0373933_0002240|Ga0373933_0002240_4965_6608
Length 547
Sequence MAYLTAYLGGHVRKALVSSLYSVYDCVMKTLHISDDFDLCYRAICSRDQRFDGRFFVAVTTTGVYCRPICPAPTPHAPNVCFYPCAAAAEAAGFRACRRCHPEASPGSPDWDVRADLVARALRLIADGIMDSEGVTGLASRLAVSERHLHRELVAEVGVGPLALARTRRAQTARLLIDQTSLSLTTIAFTAGFASIRQFNATMQEAFGCAPSDLRRRTSPENRGEGKLTLRLNYRPPFDAASLLTYFERRALPGVEEVVAGCYRRTVQLPHSQGIIELEPIEKAHAVLLRVQLDTLSDLSILVQRCRQLFDLDAAPIAIAEILGADPVLAPLVMARPGLRVPGAINGFELAVRAILGQQVSVAGARTLAGRLVQKAGTPLEQPQGNLTHYFPSAQALAQADMQGLGLTGNRITALQALAHAVAEDGLILDRDADREQTIAHLLKLPGVGPWTAAYIAMRALGDPDAFPAADLGLRHALEHVGLPADAKNVERHAEQWRPWRAYATHHLWASLPPPTQPTKQRKPLTSETSVVSEQSQPELVVDNVSL

Samples

Sample ID Description Type Environment
1 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
21 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
30 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
31 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
32 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
33 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
34 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
35 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
37 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
50 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
51 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
52 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
53 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
59 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
60 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
61 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
62 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
63 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
64 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
65 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
66 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
67 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
68 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
69 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
70 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
73 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
74 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
75 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
76 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
77 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
78 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
79 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
80 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
81 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
82 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
83 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
84 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
85 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
86 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
87 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
88 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
89 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
90 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
91 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
92 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
93 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
96 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
97 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
98 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
114 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
115 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
116 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
117 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
118 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
119 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
120 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
123 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
124 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
127 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
128 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
129 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
130 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
131 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
132 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
133 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
134 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
135 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
136 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
137 2687453737 Frankia sp. BMG5.36 Isolate Nodule
138 2738541307 Variovorax sp. GV008 Isolate Unclassified
139 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
140 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
141 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.32
Metatranscriptomes 1.05
Isolates 2.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.89
Nodule 0.53
Rhizoplane 0
Rhizosphere 85.26
Stem 0
Stem Tuber 0
Unclassified 7.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0373933_0002240 3300035724 Bacteria 11043
2 rootL2_10281479 3300003322 Bacteria 2419
3 rootH1_10157635 3300003323 Bacteria 3018
4 Ga0055534_1000576 3300003784 Bacteria 19306
5 Ga0070680_100000475 3300005336 Bacteria 27467
6 Ga0070660_100036180 3300005339 Bacteria 3739
7 Ga0070691_10007135 3300005341 Bacteria 5121
8 Ga0070692_10006003 3300005345 Bacteria 5235
9 Ga0070692_10045269 3300005345 Unclassified 2269
10 Ga0070674_100083623 3300005356 Bacteria 2286
11 Ga0070659_100000129 3300005366 Bacteria 57330
12 Ga0070659_100010392 3300005366 Bacteria 6845
13 Ga0070694_100001166 3300005444 Bacteria 15122
14 Ga0070678_100043024 3300005456 Bacteria 3215
15 Ga0070698_100004806 3300005471 Bacteria 14830
16 Ga0070698_100048978 3300005471 Bacteria 4316
17 Ga0070699_100000020 3300005518 Bacteria 182025
18 Ga0070699_100086978 3300005518 Bacteria 2728
19 Ga0070679_100013051 3300005530 Bacteria 7953
20 Ga0070679_100035386 3300005530 Bacteria 4954
21 Ga0068857_100019218 3300005577 Bacteria 5998
22 Ga0068862_100016271 3300005844 Bacteria 6189
23 Ga0068862_100187141 3300005844 Unclassified 1861
24 Ga0081455_10065835 3300005937 Bacteria 3028
25 Ga0081455_10111332 3300005937 Bacteria 2175
26 Ga0081538_10013527 3300005981 Bacteria 6454
27 Ga0081538_10018337 3300005981 Bacteria 5261
28 Ga0070717_10026785 3300006028 Unclassified 4603
29 Ga0075370_10012844 3300006353 Bacteria 4437
30 Ga0075428_100016268 3300006844 Bacteria 8223
31 Ga0075428_100023447 3300006844 Bacteria 6830
32 Ga0075428_100043005 3300006844 Bacteria 4967
33 Ga0075428_100267770 3300006844 Unclassified 1839
34 Ga0075431_100047757 3300006847 Bacteria 4414
35 Ga0075434_100064187 3300006871 Bacteria 3656
36 Ga0105240_10192772 3300009093 Bacteria 2395
37 Ga0114129_10125051 3300009147 Unclassified 3537
38 Ga0114129_10249693 3300009147 Unclassified 2382
39 Ga0105243_10000187 3300009148 Bacteria 72048
40 Ga0105237_10070381 3300009545 Bacteria 3494
41 Ga0157371_10015259 3300013102 Bacteria 5769
42 Ga0157369_10000391 3300013105 Bacteria 58410
43 Ga0157369_10015986 3300013105 Bacteria 8444
44 Ga0157372_10035205 3300013307 Bacteria 5511
45 Ga0206353_11228358 3300020082 Bacteria 3343
46 Ga0213875_10019000 3300021388 Bacteria 3308
47 Ga0224712_10010699 3300022467 Unclassified 2816
48 Ga0209675_1000714 3300025291 Bacteria 22673
49 Ga0209675_1004708 3300025291 Bacteria 5975
50 Ga0209025_1035252 3300025294 Bacteria 2264
51 Ga0209050_1008758 3300025298 Bacteria 5324
52 Ga0209257_1004364 3300025304 Bacteria 11009
53 Ga0207684_10053300 3300025910 Unclassified 3434
54 Ga0207671_10012961 3300025914 Bacteria 6672
55 Ga0207657_10021174 3300025919 Bacteria 6125
56 Ga0207657_10027224 3300025919 Bacteria 5238
57 Ga0207652_10210860 3300025921 Bacteria 1749
58 Ga0207690_10000247 3300025932 Bacteria 39179
59 Ga0207669_10068950 3300025937 Bacteria 2211
60 Ga0207674_10095174 3300026116 Unclassified 2965
61 Ga0268266_10022501 3300028379 Bacteria 5371
62 Ga0268265_10082787 3300028380 Bacteria 2538
63 Ga0268265_10155499 3300028380 Unclassified 1934
64 Ga0268264_10113075 3300028381 Bacteria 2381
65 Ga0307515_10015100 3300028794 Bacteria 14253
66 Ga0265338_10055462 3300028800 Bacteria 3524
67 Ga0265338_10137918 3300028800 Bacteria 1914
68 Ga0265325_10008268 3300031241 Bacteria 6148
69 Ga0265340_10013339 3300031247 Unclassified 4318
70 Ga0265339_10016930 3300031249 Bacteria 4330
71 Ga0265316_10010228 3300031344 Bacteria 8566
72 Ga0265314_10010056 3300031711 Bacteria 7930
73 Ga0307405_10164492 3300031731 Bacteria 1575
74 Ga0307415_100006330 3300032126 Bacteria 6372
75 Ga0395899_0026833 3300037312 Bacteria 4345
76 Ga0395899_0069328 3300037312 Bacteria 2583
77 Ga0395900_0043226 3300037418 Bacteria 4644
78 Ga0395898_0058492 3300037466 Bacteria 3752
79 Ga0395898_0092649 3300037466 Bacteria 2906
80 Ga0395905_0052644 3300037471 Bacteria 3811
81 Ga0436364_0693942 3300037853 Bacteria 1623
82 Ga0436364_1565546 3300037853 Bacteria 3551
83 Ga0395901_0089588 3300038443 Bacteria 3219
84 Ga0436365_0392316 3300039437 Bacteria 5703
85 Ga0436365_0439231 3300039437 Bacteria 18529
86 Ga0436365_0886308 3300039437 Bacteria 51835
87 Ga0436363_0319391 3300039450 Unclassified 2371
88 Ga0439452_004664 3300042010 Bacteria 4545
89 Ga0450923_003079 3300042125 Bacteria 2473
90 Ga0439434_0010058 3300042435 Bacteria 2786
91 Ga0466965_0022459 3300044683 Bacteria 3041
92 Ga0466963_0030923 3300044694 Bacteria 3458
93 Ga0453684_0333746 3300044712 Bacteria 1714
94 Ga0466968_0012945 3300044735 Bacteria 3274
95 Ga0466968_0026850 3300044735 Bacteria 2367
96 Ga0466957_0004458 3300044842 Bacteria 7804
97 Ga0466958_0003620 3300045836 Bacteria 8056
98 Ga0466958_0106143 3300045836 Bacteria 1751
99 Ga0495627_004860 3300046453 Bacteria 5532
100 Ga0495592_0017006 3300046454 Bacteria 5522
101 Ga0495592_0076530 3300046454 Bacteria 2427
102 Ga0495651_0011167 3300046462 Bacteria 6905
103 Ga0495580_0057315 3300046472 Bacteria 2742
104 Ga0495662_0012467 3300046476 Bacteria 4148
105 Ga0495664_0002876 3300046477 Bacteria 9283
106 Ga0495664_0016382 3300046477 Bacteria 4220
107 Ga0495608_0019145 3300046511 Bacteria 4717
108 Ga0495628_0076039 3300046516 Bacteria 2613
109 Ga0495630_0043666 3300046517 Bacteria 3349
110 Ga0495630_0099449 3300046517 Bacteria 2201
111 Ga0495666_0018615 3300046526 Bacteria 3453
112 Ga0495665_0004196 3300046531 Bacteria 7776
113 Ga0495587_0002208 3300046536 Bacteria 13009
114 Ga0495587_0047365 3300046536 Bacteria 2549
115 Ga0495645_0049910 3300046543 Bacteria 3046
116 Ga0495645_0077754 3300046543 Bacteria 2385
117 Ga0495657_0003863 3300046675 Bacteria 12068
118 Ga0495657_0098492 3300046675 Bacteria 1865
119 Ga0495646_0004412 3300046680 Bacteria 8858
120 Ga0495646_0013894 3300046680 Bacteria 5117
121 Ga0495613_0093879 3300046689 Bacteria 2171
122 Ga0495600_0102453 3300046809 Bacteria 1865
123 Ga0495581_0006831 3300047315 Bacteria 6621
124 Ga0495604_0001456 3300047317 Bacteria 19440
125 Ga0495604_0038678 3300047317 Bacteria 3753
126 Ga0495675_0031460 3300047444 Bacteria 3387
127 Ga0495593_0000258 3300047673 Bacteria 28592
128 Ga0495602_0027456 3300048088 Bacteria 5469
129 Ga0495602_0048480 3300048088 Bacteria 3816
130 Ga0496123_0048216 3300048926 Bacteria 2868
131 Ga0501032_0027337 3300049569 Bacteria 3920
132 Ga0501034_0000890 3300049571 Bacteria 43752
133 Ga0501034_0039699 3300049571 Bacteria 4768
134 Ga0501036_0014255 3300049572 Bacteria 6615
135 Ga0501037_0005365 3300049573 Bacteria 9329
136 Ga0501037_0057463 3300049573 Bacteria 2840
137 Ga0501037_0126263 3300049573 Bacteria 1836
138 Ga0501038_0010916 3300049574 Bacteria 8296
139 Ga0501039_0010257 3300049575 Bacteria 7141
140 Ga0501040_0073567 3300049576 Bacteria 2361
141 Ga0501041_0011912 3300049577 Bacteria 5148
142 Ga0501042_0102417 3300049578 Bacteria 2059
143 Ga0501043_0022836 3300049579 Bacteria 4905
144 Ga0501046_0050763 3300049580 Bacteria 3276
145 Ga0501047_0000572 3300049581 Bacteria 39178
146 Ga0501047_0088592 3300049581 Bacteria 2972
147 Ga0501048_0042416 3300049582 Bacteria 3257
148 Ga0501048_0120989 3300049582 Bacteria 1850
149 Ga0501048_0138328 3300049582 Bacteria 1721
150 Ga0501069_0003618 3300049585 Bacteria 7964
151 Ga0501069_0045225 3300049585 Bacteria 2438
152 Ga0501070_0000574 3300049586 Bacteria 33464
153 Ga0501070_0009730 3300049586 Bacteria 8129
154 Ga0501073_0146798 3300049589 Bacteria 1634
155 Ga0501074_0000879 3300049590 Bacteria 19190
156 Ga0501074_0166441 3300049590 Bacteria 1574
157 Ga0501076_0105136 3300049592 Bacteria 2278
158 Ga0501077_0047193 3300049593 Bacteria 2736
159 Ga0501079_0019311 3300049741 Bacteria 5204
160 Ga0501080_0024280 3300049742 Bacteria 5620
161 Ga0501080_0101413 3300049742 Bacteria 2670
162 Ga0501083_0021873 3300049744 Bacteria 4441
163 Ga0501035_0109905 3300049822 Bacteria 2416
164 Ga0501044_0004201 3300049823 Bacteria 16184
165 Ga0501044_0012939 3300049823 Bacteria 9032
166 Ga0501044_0037430 3300049823 Bacteria 5072
167 Ga0501045_0064231 3300049824 Bacteria 2694
168 Ga0501045_0083894 3300049824 Bacteria 2350
169 nmdc:mga03n38_34160_c1 3300050490 Bacteria 2169
170 nmdc:mga07m45_24620_c1 3300050496 Bacteria 3299
171 nmdc:mga05p37_280317_c1 3300050507 Bacteria 1988
172 nmdc:mga0qj67_70968_c1 3300050509 Unclassified 2779
173 nmdc:mga06r32_38636_c1 3300050510 Bacteria 4524
174 Ga0495601_0027255 3300053077 Bacteria 3532
175 Ga0500646_0000587 3300053090 Bacteria 10481
176 Ga0500646_0001351 3300053090 Bacteria 6508
177 Ga0500640_000753 3300053095 Bacteria 8743
178 Ga0500607_064975 3300053121 Unclassified 1898
179 Ga0500588_0004729 3300053146 Bacteria 2968
180 Ga0500588_0010791 3300053146 Bacteria 2218
181 Ga0501084_0004269 3300054114 Bacteria 11631
182 Ga0501082_0051964 3300060353 Bacteria 3532
183 Ga0501082_0095619 3300060353 Bacteria 2568
184 Ga0466962_0022674 3300061719 Bacteria 3018
185 Ga0530510_0130358 3300061734 Bacteria 1849
186 2689962449 2687453737 Bacteria 11203906
187 2738884642 2738541307 Bacteria 8606193
188 8025482492 8025478263 Bacteria 8209203
189 8055034867 8055034563 Bacteria 3562128
190 8055039579 8055037949 Bacteria 3337834
191 Ga0373933_0002240
192 rootL2_10281479
193 rootH1_10157635
194 Ga0055534_1000576
195 Ga0070680_100000475
196 Ga0070660_100036180
197 Ga0070691_10007135
198 Ga0070692_10006003
199 Ga0070692_10045269
200 Ga0070674_100083623
201 Ga0070659_100000129
202 Ga0070659_100010392
203 Ga0070694_100001166
204 Ga0070678_100043024
205 Ga0070698_100004806
206 Ga0070698_100048978
207 Ga0070699_100000020
208 Ga0070699_100086978
209 Ga0070679_100013051
210 Ga0070679_100035386
211 Ga0068857_100019218
212 Ga0068862_100016271
213 Ga0068862_100187141
214 Ga0081455_10065835
215 Ga0081455_10111332
216 Ga0081538_10013527
217 Ga0081538_10018337
218 Ga0070717_10026785
219 Ga0075370_10012844
220 Ga0075428_100016268
221 Ga0075428_100023447
222 Ga0075428_100043005
223 Ga0075428_100267770
224 Ga0075431_100047757
225 Ga0075434_100064187
226 Ga0105240_10192772
227 Ga0114129_10125051
228 Ga0114129_10249693
229 Ga0105243_10000187
230 Ga0105237_10070381
231 Ga0157371_10015259
232 Ga0157369_10000391
233 Ga0157369_10015986
234 Ga0157372_10035205
235 Ga0206353_11228358
236 Ga0213875_10019000
237 Ga0224712_10010699
238 Ga0209675_1000714
239 Ga0209675_1004708
240 Ga0209025_1035252
241 Ga0209050_1008758
242 Ga0209257_1004364
243 Ga0207684_10053300
244 Ga0207671_10012961
245 Ga0207657_10021174
246 Ga0207657_10027224
247 Ga0207652_10210860
248 Ga0207690_10000247
249 Ga0207669_10068950
250 Ga0207674_10095174
251 Ga0268266_10022501
252 Ga0268265_10082787
253 Ga0268265_10155499
254 Ga0268264_10113075
255 Ga0307515_10015100
256 Ga0265338_10055462
257 Ga0265338_10137918
258 Ga0265325_10008268
259 Ga0265340_10013339
260 Ga0265339_10016930
261 Ga0265316_10010228
262 Ga0265314_10010056
263 Ga0307405_10164492
264 Ga0307415_100006330
265 Ga0395899_0026833
266 Ga0395899_0069328
267 Ga0395900_0043226
268 Ga0395898_0058492
269 Ga0395898_0092649
270 Ga0395905_0052644
271 Ga0436364_0693942
272 Ga0436364_1565546
273 Ga0395901_0089588
274 Ga0436365_0392316
275 Ga0436365_0439231
276 Ga0436365_0886308
277 Ga0436363_0319391
278 Ga0439452_004664
279 Ga0450923_003079
280 Ga0439434_0010058
281 Ga0466965_0022459
282 Ga0466963_0030923
283 Ga0453684_0333746
284 Ga0466968_0012945
285 Ga0466968_0026850
286 Ga0466957_0004458
287 Ga0466958_0003620
288 Ga0466958_0106143
289 Ga0495627_004860
290 Ga0495592_0017006
291 Ga0495592_0076530
292 Ga0495651_0011167
293 Ga0495580_0057315
294 Ga0495662_0012467
295 Ga0495664_0002876
296 Ga0495664_0016382
297 Ga0495608_0019145
298 Ga0495628_0076039
299 Ga0495630_0043666
300 Ga0495630_0099449
301 Ga0495666_0018615
302 Ga0495665_0004196
303 Ga0495587_0002208
304 Ga0495587_0047365
305 Ga0495645_0049910
306 Ga0495645_0077754
307 Ga0495657_0003863
308 Ga0495657_0098492
309 Ga0495646_0004412
310 Ga0495646_0013894
311 Ga0495613_0093879
312 Ga0495600_0102453
313 Ga0495581_0006831
314 Ga0495604_0001456
315 Ga0495604_0038678
316 Ga0495675_0031460
317 Ga0495593_0000258
318 Ga0495602_0027456
319 Ga0495602_0048480
320 Ga0496123_0048216
321 Ga0501032_0027337
322 Ga0501034_0000890
323 Ga0501034_0039699
324 Ga0501036_0014255
325 Ga0501037_0005365
326 Ga0501037_0057463
327 Ga0501037_0126263
328 Ga0501038_0010916
329 Ga0501039_0010257
330 Ga0501040_0073567
331 Ga0501041_0011912
332 Ga0501042_0102417
333 Ga0501043_0022836
334 Ga0501046_0050763
335 Ga0501047_0000572
336 Ga0501047_0088592
337 Ga0501048_0042416
338 Ga0501048_0120989
339 Ga0501048_0138328
340 Ga0501069_0003618
341 Ga0501069_0045225
342 Ga0501070_0000574
343 Ga0501070_0009730
344 Ga0501073_0146798
345 Ga0501074_0000879
346 Ga0501074_0166441
347 Ga0501076_0105136
348 Ga0501077_0047193
349 Ga0501079_0019311
350 Ga0501080_0024280
351 Ga0501080_0101413
352 Ga0501083_0021873
353 Ga0501035_0109905
354 Ga0501044_0004201
355 Ga0501044_0012939
356 Ga0501044_0037430
357 Ga0501045_0064231
358 Ga0501045_0083894
359 nmdc:mga03n38_34160_c1
360 nmdc:mga07m45_24620_c1
361 nmdc:mga05p37_280317_c1
362 nmdc:mga0qj67_70968_c1
363 nmdc:mga06r32_38636_c1
364 Ga0495601_0027255
365 Ga0500646_0000587
366 Ga0500646_0001351
367 Ga0500640_000753
368 Ga0500607_064975
369 Ga0500588_0004729
370 Ga0500588_0010791
371 Ga0501084_0004269
372 Ga0501082_0051964
373 Ga0501082_0095619
374 Ga0466962_0022674
375 Ga0530510_0130358
376 2689962449
377 2738884642
378 8025482492
379 8055034867
380 8055039579

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02805

Ada_Zn_binding

Metal binding domain of Ada

39

103

0.99

PF06029

AlkA_N

AlkA N-terminal domain

229

346

0.99

PF12833

HTH_18

Helix-turn-helix domain

138

217

0.97

PF00730

HhH-GPD

HhH-GPD superfamily base excision DNA repair protein

352

500

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cvs-assembly1.cif.gz_D crystal structure of an alka host/guest complex 8oxoguanine:adenine base pair 0.9432 169 446
3oh6-assembly1.cif.gz_A alka undamaged dna complex: interrogation of a c:g base pair 0.9321 162 448
3ogd-assembly1.cif.gz_A alka undamaged dna complex: interrogation of a g*:c base pair 0.915 162 453
3cvs-assembly1.cif.gz_D crystal structure of an alka host/guest complex 8oxoguanine:adenine base pair 0.9045 169 446
3oh6-assembly1.cif.gz_A alka undamaged dna complex: interrogation of a c:g base pair 0.8949 162 448
ID Description Score Start End Superfamily
1u8bA01 Alpha Beta;3-Layer(aba) Sandwich;DNA Methylphosphotriester Repair Domain;DNA Methylphosphotriester Repair Domain 0.9794 4 71 3.40.10.10
af_P9WJW3_2_72_3.40.10.10 Alpha Beta;3-Layer(aba) Sandwich;DNA Methylphosphotriester Repair Domain;DNA Methylphosphotriester Repair Domain 0.9775 4 71 3.40.10.10
af_Q59SD2_1_74_3.40.10.10 Alpha Beta;3-Layer(aba) Sandwich;DNA Methylphosphotriester Repair Domain;DNA Methylphosphotriester Repair Domain 0.9727 4 71 3.40.10.10
af_P9WJW3_319_432_1.10.340.30 Mainly Alpha;Orthogonal Bundle;Endonuclease III; domain 1;Hypothetical protein; domain 2 0.9632 289 403 1.10.340.30
af_A0A1D8PGW0_1_74_3.40.10.10 Alpha Beta;3-Layer(aba) Sandwich;DNA Methylphosphotriester Repair Domain;DNA Methylphosphotriester Repair Domain 0.9395 9 70 3.40.10.10
ID Description Score Start End GO Terms
AF-A0A2P5LTP7-F1-model_v4 Ada DNA repair metal-binding domain-containing protein 0.9819 2 71 GO:0003677
GO:0006281
GO:0006355
GO:0008168
GO:0008270
AF-A0A2R7QSH7-F1-model_v4 3-methyladenine DNA glycosylase 0.9761 3 70 GO:0003677
GO:0006281
GO:0006355
GO:0008168
GO:0008270
AF-A0A258ECS3-F1-model_v4 Ada DNA repair metal-binding domain-containing protein 0.9692 1 70 GO:0003677
GO:0006281
GO:0006355
GO:0008168
GO:0008270
AF-A0A2R7QSH7-F1-model_v4 3-methyladenine DNA glycosylase 0.9622 3 70 GO:0003677
GO:0006281
GO:0006355
GO:0008168
GO:0008270
AF-A0A536P3S6-F1-model_v4 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) 0.9586 166 450 GO:0005737
GO:0006285
GO:0006307
GO:0008725
GO:0032131
GO:0032993
GO:0043916

Map