F292487

General Info

Members Datasets Scaffolds Average Seq Length
190 150 174 494

Family's Representative Sequence

Representative Sequence 3300013100|Ga0157373_10054179|Ga0157373_100541792
Length 538
Sequence MPPPTISRSTISDFGLFMVDKLRQISLNILARYGAKRKRVTFIRNEPKLQNETHRRGIVAKTNILVIDQGTTSTRSIIFDGAARRLATAQVEFAQHYVAPGWVEHDPEDIWRDTLATARQNQRETAVIWDRSTEEPIYPAIVWQDRRGAGHCQDLTANGAEPEVRAKTGLLIDPYFSATKIAWILDNVAGARARAERGELAFGTIDSFLLSRLTGGQVHATDLTNASRTLLFDIHKGEWDGELCRLFRIPMAVLPEVHENSHVYGTTLPDLFGAPIPIAGMAGDQQAALFGQACFSAGMVKSTYGTGCFMLLNTGREALASKNRLLTTPAYRLNGETTYALEGSIFIAGAAVKWLRDGIGVITHASQTNDMATQVPDSHGVYMVPAFVGLGAPHWDADARGAIYGLTLGATAAHLARAALESVAYQSMDLVAAMAADGAPRPATMRIDGGMASNDWMCRFLADMIDTPVERPSELEATARGAAFHAGLCTGLWSGLADLSRLWSCEARFEPSMAATVRTPLIAGWRDAVRRTLSAGPA

Samples

Sample ID Description Type Environment
1 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
2 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
3 2738541278 Niastella sp. CF465 Isolate Unclassified
4 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
5 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
6 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
7 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
8 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
9 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
10 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
11 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
12 2928526807 Sphingomonas trueperi 1770 Isolate Rhizosphere
13 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
14 2928968154 Sphingomonas trueperi 1075 Isolate Unclassified
15 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
16 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
17 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
18 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
19 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
20 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
21 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
22 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
23 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
24 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
25 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
26 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
27 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
28 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
29 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
30 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
31 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
32 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
33 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
36 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
39 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
40 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
41 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
42 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
46 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
47 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
48 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
49 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
50 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
62 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
63 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
65 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
66 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
88 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
89 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
90 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
91 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
92 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
93 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
94 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
95 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
96 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
97 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
98 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
99 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
100 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
101 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
102 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
103 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
104 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
105 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
106 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
107 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
108 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
109 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
110 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
111 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
112 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
113 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
114 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
115 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
116 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
117 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
118 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
119 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
120 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
121 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
122 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
123 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
124 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
125 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
126 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
127 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
128 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
129 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
130 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
131 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
132 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
133 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
134 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
137 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
139 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
140 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
141 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
142 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
143 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
144 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
145 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
146 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
147 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
148 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
149 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
150 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.58
Metatranscriptomes 0
Isolates 8.42

Biome Distribution

Category Percentage (%)
Aerial Root 1.05
Bulb 0
Endosphere 10
Nodule 0
Rhizoplane 0.53
Rhizosphere 72.63
Stem 0
Stem Tuber 0
Unclassified 15.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10007253 3300001979 Bacteria 4519
2 JGI25165J46597_1000120 3300003214 Bacteria 136275
3 Ga0070658_10008474 3300005327 Bacteria 8266
4 Ga0070658_10083418 3300005327 Bacteria 2627
5 Ga0070676_10028372 3300005328 Bacteria 3179
6 Ga0070683_100075171 3300005329 Bacteria 3156
7 Ga0070670_100065902 3300005331 Bacteria 3108
8 Ga0070660_100001572 3300005339 Bacteria 15695
9 Ga0070661_100037612 3300005344 Bacteria 3521
10 Ga0070668_100011746 3300005347 Bacteria 6521
11 Ga0070669_100077434 3300005353 Bacteria 2471
12 Ga0070659_100019460 3300005366 Bacteria 5145
13 Ga0070667_100059159 3300005367 Bacteria 3241
14 Ga0070663_100029295 3300005455 Bacteria 3760
15 Ga0070662_100009440 3300005457 Bacteria 6378
16 Ga0070681_10001185 3300005458 Bacteria 22558
17 Ga0070699_100073021 3300005518 Bacteria 2985
18 Ga0070695_100002206 3300005545 Bacteria 11167
19 Ga0070665_100039794 3300005548 Bacteria 4725
20 Ga0070665_100206964 3300005548 Bacteria 1963
21 Ga0068855_100053173 3300005563 Bacteria 4766
22 Ga0070664_100053499 3300005564 Bacteria 3422
23 Ga0068857_100008184 3300005577 Bacteria 9033
24 Ga0068857_100012590 3300005577 Bacteria 7369
25 Ga0068854_100010883 3300005578 Bacteria 5904
26 Ga0068854_100060755 3300005578 Bacteria 2735
27 Ga0068856_100020768 3300005614 Bacteria 6382
28 Ga0068856_100025134 3300005614 Bacteria 5803
29 Ga0068852_100006087 3300005616 Bacteria 8696
30 Ga0068859_100017821 3300005617 Bacteria 7138
31 Ga0068859_100142159 3300005617 Bacteria 2473
32 Ga0068866_10020586 3300005718 Bacteria 3024
33 Ga0068863_100019500 3300005841 Bacteria 6488
34 Ga0068863_100139949 3300005841 Bacteria 2313
35 Ga0068858_100068998 3300005842 Bacteria 3276
36 Ga0068858_100141800 3300005842 Bacteria 2256
37 Ga0068862_100005286 3300005844 Bacteria 10818
38 Ga0075368_10002397 3300006042 Bacteria 6107
39 Ga0075432_10000255 3300006058 Bacteria 14565
40 Ga0075367_10003407 3300006178 Bacteria 7581
41 Ga0075433_10083370 3300006852 Bacteria 2821
42 Ga0075434_100165776 3300006871 Bacteria 2229
43 Ga0097620_100017821 3300006931 Bacteria 7138
44 Ga0097620_100142168 3300006931 Bacteria 2473
45 Ga0099794_10043580 3300007265 Bacteria 2142
46 Ga0105248_10028943 3300009177 Bacteria 6176
47 Ga0105238_10186163 3300009551 Bacteria 2053
48 Ga0157373_10054179 3300013100 Bacteria 2850
49 Ga0157373_10058232 3300013100 Bacteria 2740
50 Ga0157371_10075999 3300013102 Bacteria 2379
51 Ga0157369_10048030 3300013105 Bacteria 4632
52 Ga0157372_10036673 3300013307 Bacteria 5404
53 Ga0157372_10090712 3300013307 Bacteria 3475
54 Ga0163163_10034469 3300014325 Bacteria 4903
55 Ga0157380_10042641 3300014326 Bacteria 3547
56 Ga0213874_10008433 3300021377 Bacteria 2512
57 Ga0213875_10003318 3300021388 Bacteria 9200
58 Ga0209147_101303 3300025229 Bacteria 9611
59 Ga0207427_100335 3300025231 Bacteria 31244
60 Ga0209233_1000003 3300025261 Bacteria 1607366
61 Ga0207647_10009478 3300025904 Bacteria 6915
62 Ga0207645_10050624 3300025907 Bacteria 2652
63 Ga0207705_10087264 3300025909 Bacteria 2281
64 Ga0207671_10008492 3300025914 Bacteria 8703
65 Ga0207657_10001942 3300025919 Bacteria 22329
66 Ga0207649_10054242 3300025920 Bacteria 2494
67 Ga0207659_10192623 3300025926 Bacteria 1623
68 Ga0207706_10003880 3300025933 Bacteria 14211
69 Ga0207706_10004905 3300025933 Bacteria 12514
70 Ga0207706_10017992 3300025933 Bacteria 6358
71 Ga0207706_10037675 3300025933 Bacteria 4292
72 Ga0207711_10016830 3300025941 Bacteria 6071
73 Ga0207679_10004905 3300025945 Bacteria 8340
74 Ga0207640_10050710 3300025981 Bacteria 2695
75 Ga0207703_10017815 3300026035 Bacteria 5546
76 Ga0207703_10120478 3300026035 Bacteria 2252
77 Ga0207678_10001918 3300026067 Bacteria 18985
78 Ga0207678_10028606 3300026067 Bacteria 4863
79 Ga0207702_10002844 3300026078 Bacteria 16184
80 Ga0207641_10120946 3300026088 Bacteria 2336
81 Ga0207674_10003028 3300026116 Bacteria 20826
82 Ga0207674_10003401 3300026116 Bacteria 19514
83 Ga0207674_10012349 3300026116 Bacteria 9549
84 Ga0207698_10000136 3300026142 Bacteria 46199
85 Ga0209813_10000615 3300027866 Bacteria 8299
86 Ga0268266_10021679 3300028379 Bacteria 5474
87 Ga0268265_10002774 3300028380 Bacteria 12923
88 Ga0268264_10001669 3300028381 Bacteria 20437
89 Ga0265339_10002580 3300031249 Bacteria 12915
90 Ga0307513_10056528 3300031456 Bacteria 4188
91 Ga0307509_10047820 3300031507 Bacteria 4599
92 Ga0307408_100008447 3300031548 Bacteria 6798
93 Ga0265314_10017632 3300031711 Bacteria 5596
94 Ga0307405_10016800 3300031731 Bacteria 3999
95 Ga0307406_10018924 3300031901 Bacteria 4034
96 Ga0307412_10015543 3300031911 Bacteria 4516
97 Ga0307412_10026770 3300031911 Bacteria 3588
98 Ga0307416_100039090 3300032002 Bacteria 3669
99 Ga0307414_10001054 3300032004 Bacteria 14101
100 Ga0395899_0000542 3300037312 Bacteria 40992
101 Ga0395899_0044788 3300037312 Bacteria 3296
102 Ga0395900_0024459 3300037418 Bacteria 6185
103 Ga0395900_0064075 3300037418 Bacteria 3778
104 Ga0395905_0007116 3300037471 Bacteria 11181
105 Ga0395905_0015252 3300037471 Bacteria 7306
106 Ga0395905_0032783 3300037471 Bacteria 4884
107 Ga0395905_0086817 3300037471 Bacteria 2933
108 Ga0436364_1505086 3300037853 Bacteria 23518
109 Ga0395901_0105358 3300038443 Bacteria 2960
110 Ga0395901_0130952 3300038443 Bacteria 2636
111 Ga0400490_16782 3300038726 Bacteria 27054
112 Ga0400488_07670 3300038741 Bacteria 3746
113 Ga0400483_125175 3300039062 Bacteria 27563
114 Ga0400483_125783 3300039062 Bacteria 4953
115 Ga0400487_00552 3300039110 Bacteria 33585
116 Ga0439448_0005567 3300042005 Bacteria 3593
117 Ga0439448_0011324 3300042005 Bacteria 2657
118 Ga0439455_0001182 3300042012 Bacteria 4235
119 Ga0439458_0002095 3300042157 Bacteria 4949
120 Ga0439435_0006863 3300042436 Bacteria 2578
121 Ga0466972_0003370 3300044658 Bacteria 7919
122 Ga0466966_0023952 3300044684 Bacteria 3995
123 Ga0466961_0077576 3300044693 Bacteria 2104
124 Ga0466964_0006114 3300044706 Bacteria 4488
125 Ga0466968_0002505 3300044735 Bacteria 6746
126 Ga0466968_0026609 3300044735 Bacteria 2376
127 Ga0466970_0038132 3300044765 Bacteria 2548
128 Ga0466960_0012793 3300044901 Bacteria 3550
129 Ga0466959_0045658 3300045049 Bacteria 3226
130 Ga0495627_000103 3300046453 Bacteria 104335
131 Ga0495650_0001780 3300046471 Bacteria 19538
132 Ga0495596_0000722 3300046500 Bacteria 20365
133 Ga0495583_0000111 3300046506 Bacteria 138300
134 Ga0495610_0000013 3300046512 Bacteria 465872
135 Ga0495610_0000131 3300046512 Bacteria 82558
136 Ga0495610_0030562 3300046512 Bacteria 2821
137 Ga0495632_0002068 3300046519 Bacteria 15756
138 Ga0495643_0000004 3300046522 Bacteria 519944
139 Ga0495587_0030605 3300046536 Bacteria 3264
140 Ga0495669_0054442 3300046684 Bacteria 1801
141 Ga0495669_0094590 3300046684 Bacteria 1383
142 Ga0495670_0008142 3300046691 Bacteria 5153
143 Ga0495681_0000174 3300047470 Bacteria 53932
144 Ga0495686_0003597 3300047472 Bacteria 13301
145 Ga0495686_0005440 3300047472 Bacteria 10044
146 Ga0495626_0007962 3300048091 Bacteria 5859
147 Ga0496116_0000011 3300048919 Bacteria 646953
148 Ga0496121_0000226 3300048924 Bacteria 121831
149 Ga0496121_0001747 3300048924 Bacteria 35489
150 Ga0496123_0000202 3300048926 Bacteria 121753
151 Ga0496123_0059283 3300048926 Bacteria 2476
152 Ga0496124_0000071 3300048927 Bacteria 220642
153 Ga0496124_0000263 3300048927 Bacteria 101467
154 Ga0496124_0002073 3300048927 Bacteria 27131
155 Ga0496124_0002463 3300048927 Bacteria 24200
156 Ga0496124_0085778 3300048927 Bacteria 2579
157 Ga0496125_0069267 3300048928 Bacteria 2769
158 Ga0495682_0005386 3300049460 Bacteria 5325
159 Ga0501047_0017705 3300049581 Bacteria 6824
160 Ga0501047_0139932 3300049581 Bacteria 2299
161 Ga0501225_0001171 3300049705 Bacteria 8185
162 nmdc:mga06z11_1678_c1 3300050494 Bacteria 8305
163 nmdc:mga04h51_624_c1 3300050495 Bacteria 8299
164 nmdc:mga0a205_42160_c1 3300050515 Bacteria 4397
165 Ga0500578_0000541 3300053086 Bacteria 45881
166 Ga0500643_000379 3300053087 Bacteria 34719
167 Ga0500583_0000010 3300053092 Bacteria 160546
168 Ga0500583_0002177 3300053092 Bacteria 5819
169 Ga0500651_0038991 3300053093 Bacteria 2992
170 Ga0500555_000403 3300053103 Bacteria 18009
171 Ga0500642_0015708 3300053130 Bacteria 2856
172 Ga0500655_000076 3300053133 Bacteria 26675
173 Ga0500559_0000549 3300053136 Bacteria 26012
174 Ga0500661_000110 3300055283 Bacteria 13313

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046684 Ga0495669_0094590 Ga0495669_0094590_70_1368 431
2 3300025904 Ga0207647_10009478 Ga0207647_100094786 453
3 3300013307 Ga0157372_10090712 Ga0157372_100907123 459
4 3300037471 Ga0395905_0086817 Ga0395905_0086817_895_2388 460
5 3300031548 Ga0307408_100008447 Ga0307408_1000084472 461
6 3300031731 Ga0307405_10016800 Ga0307405_100168002 461
7 3300031901 Ga0307406_10018924 Ga0307406_100189242 461
8 3300031911 Ga0307412_10026770 Ga0307412_100267702 461
9 3300032002 Ga0307416_100039090 Ga0307416_1000390902 461
10 3300037471 Ga0395905_0032783 Ga0395905_0032783_44_1537 461
11 3300042005 Ga0439448_0011324 Ga0439448_0011324_1101_2597 465
12 3300042012 Ga0439455_0001182 Ga0439455_0001182_2000_3496 465
13 3300042157 Ga0439458_0002095 Ga0439458_0002095_2102_3598 465
14 3300046684 Ga0495669_0054442 Ga0495669_0054442_102_1517 470
15 3300005327 Ga0070658_10083418 Ga0070658_100834181 474
16 3300025933 Ga0207706_10004905 Ga0207706_100049058 477
17 3300053093 Ga0500651_0038991 Ga0500651_0038991_117_1610 477
18 3300053130 Ga0500642_0015708 Ga0500642_0015708_239_1732 477
19 3300053133 Ga0500655_000076 Ga0500655_000076_5552_7045 477
20 3300003214 JGI25165J46597_1000120 JGI25165J46597_100012065 479
21 3300025231 Ga0207427_100335 Ga0207427_1003353 479
22 3300025261 Ga0209233_1000003 Ga0209233_10000031507 479
23 3300006058 Ga0075432_10000255 Ga0075432_100002558 482
24 3300013100 Ga0157373_10054179 Ga0157373_100541792 482
25 3300044735 Ga0466968_0002505 Ga0466968_0002505_2537_4036 482
26 iso_pu_bacteria 2738541278 2738728953 485
27 iso_pu_bacteria 2990265787 2990266723 485
28 iso_pu_bacteria 2993693658 2993693665 485
29 3300031456 Ga0307513_10056528 Ga0307513_100565284 487
30 3300021388 Ga0213875_10003318 Ga0213875_100033185 488
31 3300037853 Ga0436364_1505086 Ga0436364_1505086_2210_3685 488
32 iso_pu_bacteria 2599185359 2600225381 488
33 iso_pu_bacteria 2818991466 2819713682 488
34 iso_pu_bacteria 2928526807 2928530010 488
35 iso_pu_bacteria 2928968154 2928969846 488
36 3300053086 Ga0500578_0000541 Ga0500578_0000541_7048_8535 489
37 iso_pu_bacteria 2830075706 2830077270 489
38 3300005563 Ga0068855_100053173 Ga0068855_1000531733 490
39 3300005842 Ga0068858_100141800 Ga0068858_1001418002 490
40 3300014325 Ga0163163_10034469 Ga0163163_100344692 490
41 3300026035 Ga0207703_10120478 Ga0207703_101204782 490
42 3300031507 Ga0307509_10047820 Ga0307509_100478202 490
43 3300053092 Ga0500583_0002177 Ga0500583_0002177_3140_4630 490
44 iso_pu_bacteria 2582581305 2585262271 490
45 iso_pu_bacteria 2738541301 2738851248 490
46 iso_pu_bacteria 2738541304 2738866978 490
47 iso_pu_bacteria 2738543022 2739299495 490
48 iso_pu_bacteria 2738543033 2739361174 490
49 iso_pu_bacteria 2848297114 2848299192 490
50 iso_pu_bacteria 2928100450 2928103433 490
51 iso_pu_bacteria 2928959182 2928962485 490
52 3300005458 Ga0070681_10001185 Ga0070681_100011853 491
53 3300005518 Ga0070699_100073021 Ga0070699_1000730211 491
54 3300005545 Ga0070695_100002206 Ga0070695_1000022063 491
55 3300007265 Ga0099794_10043580 Ga0099794_100435801 491
56 3300026067 Ga0207678_10028606 Ga0207678_100286062 491
57 3300038726 Ga0400490_16782 Ga0400490_16782_12584_14068 491
58 3300038741 Ga0400488_07670 Ga0400488_07670_351_1835 491
59 3300039062 Ga0400483_125783 Ga0400483_125783_2438_3922 491
60 3300039110 Ga0400487_00552 Ga0400487_00552_13061_14545 491
61 3300042436 Ga0439435_0006863 Ga0439435_0006863_678_2159 491
62 3300049705 Ga0501225_0001171 Ga0501225_0001171_6675_8168 491
63 3300053092 Ga0500583_0000010 Ga0500583_0000010_49513_51006 491
64 3300005614 Ga0068856_100020768 Ga0068856_1000207686 492
65 3300005614 Ga0068856_100025134 Ga0068856_1000251344 492
66 3300005616 Ga0068852_100006087 Ga0068852_1000060874 492
67 3300009177 Ga0105248_10028943 Ga0105248_100289433 492
68 3300009551 Ga0105238_10186163 Ga0105238_101861632 492
69 3300025941 Ga0207711_10016830 Ga0207711_100168303 492
70 3300026078 Ga0207702_10002844 Ga0207702_100028447 492
71 3300026142 Ga0207698_10000136 Ga0207698_1000013639 492
72 3300031249 Ga0265339_10002580 Ga0265339_100025804 492
73 3300031711 Ga0265314_10017632 Ga0265314_100176324 492
74 3300031911 Ga0307412_10015543 Ga0307412_100155432 492
75 3300039062 Ga0400483_125175 Ga0400483_125175_13309_14805 492
76 3300044658 Ga0466972_0003370 Ga0466972_0003370_1643_3127 492
77 3300044684 Ga0466966_0023952 Ga0466966_0023952_2394_3878 492
78 3300044693 Ga0466961_0077576 Ga0466961_0077576_389_1873 492
79 3300044706 Ga0466964_0006114 Ga0466964_0006114_419_1903 492
80 3300044735 Ga0466968_0026609 Ga0466968_0026609_733_2217 492
81 3300044765 Ga0466970_0038132 Ga0466970_0038132_947_2431 492
82 3300044901 Ga0466960_0012793 Ga0466960_0012793_785_2269 492
83 3300045049 Ga0466959_0045658 Ga0466959_0045658_1648_3132 492
84 3300046536 Ga0495587_0030605 Ga0495587_0030605_511_1998 492
85 3300049581 Ga0501047_0017705 Ga0501047_0017705_2068_3570 492
86 3300049581 Ga0501047_0139932 Ga0501047_0139932_132_1634 492
87 3300005328 Ga0070676_10028372 Ga0070676_100283723 493
88 3300005347 Ga0070668_100011746 Ga0070668_1000117465 493
89 3300005353 Ga0070669_100077434 Ga0070669_1000774343 493
90 3300005457 Ga0070662_100009440 Ga0070662_1000094404 493
91 3300005548 Ga0070665_100206964 Ga0070665_1002069642 493
92 3300006042 Ga0075368_10002397 Ga0075368_100023974 493
93 3300006178 Ga0075367_10003407 Ga0075367_100034074 493
94 3300014326 Ga0157380_10042641 Ga0157380_100426413 493
95 3300025229 Ga0209147_101303 Ga0209147_1013035 493
96 3300025907 Ga0207645_10050624 Ga0207645_100506243 493
97 3300025914 Ga0207671_10008492 Ga0207671_100084923 493
98 3300025933 Ga0207706_10017992 Ga0207706_100179923 493
99 3300027866 Ga0209813_10000615 Ga0209813_100006156 493
100 3300042005 Ga0439448_0005567 Ga0439448_0005567_1103_2608 493
101 3300046512 Ga0495610_0000131 Ga0495610_0000131_37200_38687 493
102 3300046522 Ga0495643_0000004 Ga0495643_0000004_485938_487425 493
103 3300048927 Ga0496124_0000071 Ga0496124_0000071_59166_60653 493
104 3300050494 nmdc:mga06z11_1678_c1 nmdc:mga06z11_1678_c1_2286_3776 493
105 3300050495 nmdc:mga04h51_624_c1 nmdc:mga04h51_624_c1_4524_6014 493
106 3300005331 Ga0070670_100065902 Ga0070670_1000659022 494
107 3300005564 Ga0070664_100053499 Ga0070664_1000534993 494
108 3300005577 Ga0068857_100012590 Ga0068857_1000125903 494
109 3300005578 Ga0068854_100010883 Ga0068854_1000108832 494
110 3300005617 Ga0068859_100017821 Ga0068859_1000178213 494
111 3300005617 Ga0068859_100142159 Ga0068859_1001421592 494
112 3300005718 Ga0068866_10020586 Ga0068866_100205863 494
113 3300005841 Ga0068863_100019500 Ga0068863_1000195004 494
114 3300005841 Ga0068863_100139949 Ga0068863_1001399492 494
115 3300005842 Ga0068858_100068998 Ga0068858_1000689983 494
116 3300005844 Ga0068862_100005286 Ga0068862_10000528610 494
117 3300006852 Ga0075433_10083370 Ga0075433_100833703 494
118 3300006871 Ga0075434_100165776 Ga0075434_1001657763 494
119 3300006931 Ga0097620_100017821 Ga0097620_1000178213 494
120 3300006931 Ga0097620_100142168 Ga0097620_1001421682 494
121 3300013100 Ga0157373_10058232 Ga0157373_100582322 494
122 3300021377 Ga0213874_10008433 Ga0213874_100084332 494
123 3300025926 Ga0207659_10192623 Ga0207659_101926232 494
124 3300025933 Ga0207706_10037675 Ga0207706_100376753 494
125 3300025945 Ga0207679_10004905 Ga0207679_100049058 494
126 3300026035 Ga0207703_10017815 Ga0207703_100178153 494
127 3300026088 Ga0207641_10120946 Ga0207641_101209462 494
128 3300026116 Ga0207674_10003401 Ga0207674_100034018 494
129 3300026116 Ga0207674_10012349 Ga0207674_100123494 494
130 3300028380 Ga0268265_10002774 Ga0268265_1000277412 494
131 3300028381 Ga0268264_10001669 Ga0268264_1000166917 494
132 3300032004 Ga0307414_10001054 Ga0307414_100010547 494
133 3300037312 Ga0395899_0044788 Ga0395899_0044788_1584_3077 494
134 3300037418 Ga0395900_0024459 Ga0395900_0024459_264_1748 494
135 3300037418 Ga0395900_0064075 Ga0395900_0064075_252_1745 494
136 3300037471 Ga0395905_0015252 Ga0395905_0015252_3322_4815 494
137 3300038443 Ga0395901_0105358 Ga0395901_0105358_112_1596 494
138 3300038443 Ga0395901_0130952 Ga0395901_0130952_659_2143 494
139 3300046453 Ga0495627_000103 Ga0495627_000103_67326_68822 494
140 3300046471 Ga0495650_0001780 Ga0495650_0001780_1452_2948 494
141 3300046500 Ga0495596_0000722 Ga0495596_0000722_2279_3769 494
142 3300046506 Ga0495583_0000111 Ga0495583_0000111_112909_114399 494
143 3300046512 Ga0495610_0000013 Ga0495610_0000013_210441_211937 494
144 3300046512 Ga0495610_0030562 Ga0495610_0030562_712_2202 494
145 3300046519 Ga0495632_0002068 Ga0495632_0002068_12877_14373 494
146 3300046691 Ga0495670_0008142 Ga0495670_0008142_2510_4000 494
147 3300047470 Ga0495681_0000174 Ga0495681_0000174_50991_52487 494
148 3300047472 Ga0495686_0003597 Ga0495686_0003597_3066_4559 494
149 3300047472 Ga0495686_0005440 Ga0495686_0005440_2783_4276 494
150 3300048091 Ga0495626_0007962 Ga0495626_0007962_3852_5342 494
151 3300048919 Ga0496116_0000011 Ga0496116_0000011_356320_357810 494
152 3300048924 Ga0496121_0000226 Ga0496121_0000226_7615_9108 494
153 3300048924 Ga0496121_0001747 Ga0496121_0001747_3864_5354 494
154 3300048926 Ga0496123_0000202 Ga0496123_0000202_69802_71292 494
155 3300048927 Ga0496124_0000263 Ga0496124_0000263_61339_62829 494
156 3300048927 Ga0496124_0002073 Ga0496124_0002073_23708_25198 494
157 3300048928 Ga0496125_0069267 Ga0496125_0069267_747_2237 494
158 3300049460 Ga0495682_0005386 Ga0495682_0005386_3546_5036 494
159 3300050515 nmdc:mga0a205_42160_c1 nmdc:mga0a205_42160_c1_1221_2708 494
160 3300053087 Ga0500643_000379 Ga0500643_000379_13067_14560 494
161 3300053103 Ga0500555_000403 Ga0500555_000403_9522_11012 494
162 3300053136 Ga0500559_0000549 Ga0500559_0000549_20218_21711 494
163 3300055283 Ga0500661_000110 Ga0500661_000110_2496_3989 494
164 3300013105 Ga0157369_10048030 Ga0157369_100480302 497
165 3300037312 Ga0395899_0000542 Ga0395899_0000542_23728_25272 497
166 3300048926 Ga0496123_0059283 Ga0496123_0059283_186_1685 497
167 3300048927 Ga0496124_0002463 Ga0496124_0002463_11951_13450 497
168 3300048927 Ga0496124_0085778 Ga0496124_0085778_53_1552 497
169 3300001979 JGI24740J21852_10007253 JGI24740J21852_100072532 498
170 3300005327 Ga0070658_10008474 Ga0070658_100084745 498
171 3300005329 Ga0070683_100075171 Ga0070683_1000751712 498
172 3300005339 Ga0070660_100001572 Ga0070660_1000015724 498
173 3300005344 Ga0070661_100037612 Ga0070661_1000376122 498
174 3300005366 Ga0070659_100019460 Ga0070659_1000194604 498
175 3300005367 Ga0070667_100059159 Ga0070667_1000591593 498
176 3300005455 Ga0070663_100029295 Ga0070663_1000292952 498
177 3300005548 Ga0070665_100039794 Ga0070665_1000397943 498
178 3300005577 Ga0068857_100008184 Ga0068857_1000081843 498
179 3300005578 Ga0068854_100060755 Ga0068854_1000607552 498
180 3300013102 Ga0157371_10075999 Ga0157371_100759993 498
181 3300013307 Ga0157372_10036673 Ga0157372_100366735 498
182 3300025909 Ga0207705_10087264 Ga0207705_100872643 498
183 3300025919 Ga0207657_10001942 Ga0207657_1000194211 498
184 3300025920 Ga0207649_10054242 Ga0207649_100542422 498
185 3300025933 Ga0207706_10003880 Ga0207706_1000388010 498
186 3300025981 Ga0207640_10050710 Ga0207640_100507103 498
187 3300026067 Ga0207678_10001918 Ga0207678_100019187 498
188 3300026116 Ga0207674_10003028 Ga0207674_1000302814 498
189 3300028379 Ga0268266_10021679 Ga0268266_100216793 498
190 3300037471 Ga0395905_0007116 Ga0395905_0007116_5026_6534 498

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00370

FGGY_N

FGGY family of carbohydrate kinases, N-terminal domain

63

291

0.97

PF02782

FGGY_C

FGGY family of carbohydrate kinases, C-terminal domain

300

489

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6k76-assembly1.cif.gz_B-2 glycerol kinase form thermococcus kodakarensis, complex structure with substrate. 0.9747 7 495
6k79-assembly2.cif.gz_C glycerol kinase form thermococcus kodakarensis, complex structure with substrate. 0.9697 9 495
3ezw-assembly1.cif.gz_G crystal structure of a hyperactive escherichia coli glycerol kinase mutant gly230 --> asp obtained using microfluidic crystallization devices 0.9696 7 495
3ezw-assembly2.cif.gz_H crystal structure of a hyperactive escherichia coli glycerol kinase mutant gly230 --> asp obtained using microfluidic crystallization devices 0.9694 7 495
3ezw-assembly1.cif.gz_E crystal structure of a hyperactive escherichia coli glycerol kinase mutant gly230 --> asp obtained using microfluidic crystallization devices 0.9687 7 495
ID Description Score Start End Superfamily
4e1jB01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9883 10 254 3.30.420.40
1gleG01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9774 10 255 3.30.420.40
4e1jB01 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9725 10 254 3.30.420.40
af_Q54XW5_391_636_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9667 257 495 3.30.420.40
af_Q9W095_30_285_3.30.420.40 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;ATPase, nucleotide binding domain 0.9624 9 254 3.30.420.40
ID Description Score Start End GO Terms
AF-A0A352CJM4-F1-model_v4 Glycerol kinase 0.9926 9 143 GO:0004370
GO:0005829
GO:0019563
AF-A0A3C0G7V2-F1-model_v4 ATP:glycerol 3-phosphotransferase 0.9917 9 228 GO:0004370
GO:0005829
GO:0019563
AF-A0A3B9XVS2-F1-model_v4 Glycerol kinase 0.9914 7 289 GO:0004370
GO:0005829
GO:0019563
AF-A0A4Q3YKV4-F1-model_v4 Glycerol kinase 0.9909 7 284 GO:0004370
GO:0005829
GO:0019563
AF-A0A6I5URQ3-F1-model_v4 deleted 0.9882 9 495

Feature Viewer

pLDDT pTM Quality
92.41 0.91 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map