F291105

General Info

Members Datasets Scaffolds Average Seq Length
189 147 378 415

Family's Representative Sequence

Representative Sequence 3300026075|Ga0207708_10146633|Ga0207708_101466332
Length 487
Sequence MLADNVVPRRLIAAQATLDERINLRGYRRRVRHVLSELQRCVPDPKSYHPVLAGDRRAEPVTGHLCLAMGHDRIEGVASTTPSTSESRTALLSDIAAVAGTPCYVYDAGTIRKAYATLDDAFDGYPHAIHYALKANSTLAIVRLVQALGSHADANSLGEVDVAFRCGFRPEQIVFTGVGKSAAEIDRAVSLGLLAINVESPGELDRIDQRAIAQGVQARVALRVNPDIDAKSHPHISTGLKSNKFGVPIDEAPALFREISSRRGLLPIGAHVHIGSQITTLDPLSKAAEAVVALARGLRSDGVELQHLDMGGGLGISYDGSPVVDPAEYVRALVAATRGSGLKVAIEPGRVLVGPAGVLLSKVVDVKQFPGAKRFIVLDAGMTELMRPALYNAYHRIEPLIRRDGDEVPVDIVGPICESTDAYARDRHFPPVEVGDVVVVRDVGAYGAVMGHTYLRRPLPPEVLIDGDKWRVIRRRQTLDELLALED

Samples

Sample ID Description Type Environment
1 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
16 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
17 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
42 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
43 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
49 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
50 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
69 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
70 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
71 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
72 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
73 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
74 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
79 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
80 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
81 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
82 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
83 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
84 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
85 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
86 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
87 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
88 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
89 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
90 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
91 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
92 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
93 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
94 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
95 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
96 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
97 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
98 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
99 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
100 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
101 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
102 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
103 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
104 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
105 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
106 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
107 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
108 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
109 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
110 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
111 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
112 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
113 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
114 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
115 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
116 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
117 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
118 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
119 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
120 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
129 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
130 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
131 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
132 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
133 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
134 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
135 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
136 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
137 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
139 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
140 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
141 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
142 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
143 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
144 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
145 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
146 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
147 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.06
Nodule 0
Rhizoplane 1.59
Rhizosphere 95.24
Stem 0
Stem Tuber 0
Unclassified 6.35

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207708_10146633 3300026075 Bacteria 1855
2 Ga0070666_10139613 3300005335 Bacteria 1687
3 Ga0070680_100037743 3300005336 Bacteria 3904
4 Ga0070682_100084277 3300005337 Bacteria 2065
5 Ga0070660_100015169 3300005339 Bacteria 5559
6 Ga0070660_100093859 3300005339 Bacteria 2370
7 Ga0070661_100262219 3300005344 Unclassified 1336
8 Ga0070669_100118104 3300005353 Bacteria 2020
9 Ga0070675_100006097 3300005354 Bacteria 9244
10 Ga0070671_100150772 3300005355 Bacteria 1963
11 Ga0070674_100016741 3300005356 Bacteria 4599
12 Ga0070674_100096460 3300005356 Bacteria 2146
13 Ga0070659_100003218 3300005366 Bacteria 11625
14 Ga0070713_100099037 3300005436 Unclassified 2521
15 Ga0070711_100054753 3300005439 Unclassified 2754
16 Ga0070700_100068999 3300005441 Bacteria 2249
17 Ga0070678_100022185 3300005456 Unclassified 4201
18 Ga0070662_100083650 3300005457 Bacteria 2382
19 Ga0070681_10013757 3300005458 Bacteria 8054
20 Ga0070681_10014084 3300005458 Bacteria 7959
21 Ga0070681_10163450 3300005458 Bacteria 2150
22 Ga0070698_100045156 3300005471 Bacteria 4510
23 Ga0070698_100091381 3300005471 Bacteria 3027
24 Ga0070679_100248055 3300005530 Bacteria 1737
25 Ga0070686_100000438 3300005544 Bacteria 25888
26 Ga0070695_100000640 3300005545 Bacteria 18572
27 Ga0070695_100025971 3300005545 Bacteria 3621
28 Ga0070704_100001989 3300005549 Bacteria 11311
29 Ga0068855_100100466 3300005563 Bacteria 3331
30 Ga0068855_100126853 3300005563 Bacteria 2917
31 Ga0068857_100071637 3300005577 Unclassified 3088
32 Ga0068854_100008454 3300005578 Bacteria 6618
33 Ga0068856_100050850 3300005614 Bacteria 4086
34 Ga0068852_100139374 3300005616 Bacteria 2243
35 Ga0068859_100045105 3300005617 Bacteria 4430
36 Ga0068862_100070861 3300005844 Bacteria 3010
37 Ga0070717_10050453 3300006028 Bacteria 3420
38 Ga0075367_10124934 3300006178 Bacteria 1587
39 Ga0097621_100202949 3300006237 Unclassified 1722
40 Ga0075433_10021311 3300006852 Bacteria 5434
41 Ga0075429_100073465 3300006880 Bacteria 2979
42 Ga0075436_100000108 3300006914 Bacteria 48881
43 Ga0097620_100045104 3300006931 Bacteria 4430
44 Ga0075435_100224981 3300007076 Bacteria 1593
45 Ga0105240_10001748 3300009093 Bacteria 36689
46 Ga0105240_10081720 3300009093 Bacteria 3969
47 Ga0111539_10048238 3300009094 Bacteria 5086
48 Ga0114129_10007386 3300009147 Bacteria 15642
49 Ga0114129_10020431 3300009147 Bacteria 9417
50 Ga0114129_10154919 3300009147 Bacteria 3134
51 Ga0105248_10022163 3300009177 Bacteria 7041
52 Ga0105248_10119794 3300009177 Bacteria 2969
53 Ga0105237_10164431 3300009545 Bacteria 2218
54 Ga0105249_10034750 3300009553 Bacteria 4568
55 Ga0157369_10190628 3300013105 Bacteria 2154
56 Ga0157374_10019830 3300013296 Bacteria 5959
57 Ga0157380_10005386 3300014326 Bacteria 8944
58 Ga0157380_10274807 3300014326 Bacteria 1538
59 Ga0157376_10133670 3300014969 Bacteria 2217
60 Ga0213872_10002066 3300021361 Bacteria 12157
61 Ga0213872_10017869 3300021361 Unclassified 3273
62 Ga0213875_10005490 3300021388 Bacteria 6797
63 Ga0207643_10024064 3300025908 Bacteria 3361
64 Ga0207705_10162436 3300025909 Bacteria 1679
65 Ga0207707_10009692 3300025912 Bacteria 8356
66 Ga0207707_10130934 3300025912 Bacteria 2194
67 Ga0207695_10006690 3300025913 Bacteria 14873
68 Ga0207695_10016048 3300025913 Bacteria 8787
69 Ga0207663_10164283 3300025916 Bacteria 1571
70 Ga0207657_10058151 3300025919 Bacteria 3328
71 Ga0207657_10099268 3300025919 Unclassified 2418
72 Ga0207652_10136812 3300025921 Bacteria 2188
73 Ga0207694_10051899 3300025924 Bacteria 3179
74 Ga0207659_10015918 3300025926 Bacteria 4885
75 Ga0207690_10050665 3300025932 Unclassified 2773
76 Ga0207706_10070217 3300025933 Bacteria 3081
77 Ga0207669_10029371 3300025937 Bacteria 3040
78 Ga0207711_10016526 3300025941 Bacteria 6129
79 Ga0207711_10153748 3300025941 Bacteria 2078
80 Ga0207667_10001244 3300025949 Bacteria 31938
81 Ga0207708_10019802 3300026075 Bacteria 5074
82 Ga0207674_10117748 3300026116 Bacteria 2627
83 Ga0207675_100002502 3300026118 Bacteria 18179
84 Ga0207683_10035466 3300026121 Unclassified 4339
85 Ga0209588_1000001 3300027671 Bacteria 705877
86 Ga0207428_10019146 3300027907 Bacteria 5836
87 Ga0265338_10034012 3300028800 Bacteria 4936
88 Ga0265339_10018444 3300031249 Bacteria 4112
89 Ga0265316_10110384 3300031344 Bacteria 2083
90 Ga0307408_100017860 3300031548 Bacteria 4753
91 Ga0307408_100161534 3300031548 Bacteria 1780
92 Ga0265313_10062938 3300031595 Bacteria 1732
93 Ga0316575_10064522 3300031665 Bacteria 1466
94 Ga0265314_10000923 3300031711 Bacteria 34627
95 Ga0307406_10024769 3300031901 Bacteria 3587
96 Ga0307406_10036212 3300031901 Bacteria 3039
97 Ga0307409_100018023 3300031995 Bacteria 4729
98 Ga0307409_100051983 3300031995 Bacteria 3139
99 Ga0307409_100082873 3300031995 Bacteria 2598
100 Ga0307409_100232254 3300031995 Bacteria 1673
101 Ga0307414_10084594 3300032004 Bacteria 2334
102 Ga0307414_10113513 3300032004 Bacteria 2068
103 Ga0307411_10025460 3300032005 Bacteria 3545
104 Ga0307415_100012922 3300032126 Bacteria 4851
105 Ga0373930_0003342 3300034816 Bacteria 2537
106 Ga0373959_0001811 3300034820 Bacteria 3409
107 Ga0373938_0001023 3300034957 Bacteria 4499
108 Ga0373929_0002353 3300035085 Bacteria 3475
109 Ga0373940_0002799 3300035088 Bacteria 3459
110 Ga0373949_0001604 3300035090 Bacteria 6370
111 Ga0373951_0001636 3300035091 Bacteria 5873
112 Ga0373932_0001001 3300035112 Bacteria 8175
113 Ga0373939_0000747 3300035114 Bacteria 8008
114 Ga0373956_0084970 3300035119 Bacteria 1455
115 Ga0373960_0008376 3300035121 Bacteria 2476
116 Ga0373943_0006614 3300035170 Bacteria 5197
117 Ga0373942_0004032 3300035207 Bacteria 3428
118 Ga0373961_0001136 3300035241 Bacteria 8359
119 Ga0373931_0009113 3300035691 Bacteria 4735
120 Ga0373927_0001155 3300035695 Bacteria 19984
121 Ga0373927_0003638 3300035695 Bacteria 10996
122 Ga0373947_0036358 3300035725 Bacteria 2920
123 Ga0373925_0000408 3300037068 Bacteria 43761
124 Ga0373925_0182854 3300037068 Bacteria 1660
125 Ga0395899_0032961 3300037312 Bacteria 3893
126 Ga0395900_0209768 3300037418 Bacteria 1967
127 Ga0395905_0176576 3300037471 Bacteria 2005
128 Ga0436364_1473467 3300037853 Bacteria 9806
129 Ga0395901_0169289 3300038443 Bacteria 2292
130 Ga0436365_1757953 3300039437 Bacteria 6550
131 Ga0436360_0946981 3300039438 Unclassified 1158
132 Ga0436361_0129065 3300039447 Bacteria 18025
133 Ga0436361_0615999 3300039447 Bacteria 14991
134 Ga0439435_0014472 3300042436 Bacteria 1949
135 Ga0451577_0220863 3300042876 Bacteria 1713
136 Ga0451576_0009854 3300045051 Bacteria 11040
137 Ga0495629_0219739 3300046459 Bacteria 1311
138 Ga0495580_0129301 3300046472 Bacteria 1752
139 Ga0495621_0012655 3300046539 Bacteria 2634
140 Ga0495669_0026748 3300046684 Bacteria 2522
141 Ga0495674_0170481 3300047319 Bacteria 1816
142 Ga0495680_0094479 3300047322 Bacteria 2237
143 Ga0496108_0018282 3300048911 Bacteria 5739
144 Ga0496109_0201694 3300048912 Bacteria 1870
145 Ga0496112_0332822 3300048915 Bacteria 1462
146 Ga0496126_0003512 3300048929 Bacteria 19736
147 Ga0501033_0218302 3300049570 Bacteria 1358
148 Ga0501038_0011144 3300049574 Bacteria 8211
149 Ga0501038_0067530 3300049574 Bacteria 3042
150 Ga0501040_0001079 3300049576 Bacteria 17253
151 Ga0501041_0003139 3300049577 Bacteria 9506
152 Ga0501041_0021706 3300049577 Bacteria 3845
153 Ga0501042_0023420 3300049578 Bacteria 4321
154 Ga0501046_0006930 3300049580 Bacteria 9987
155 Ga0501047_0092350 3300049581 Bacteria 2905
156 Ga0501047_0110703 3300049581 Bacteria 2629
157 Ga0501048_0009350 3300049582 Bacteria 7361
158 Ga0501048_0177109 3300049582 Bacteria 1511
159 Ga0501068_0009593 3300049584 Bacteria 5420
160 Ga0501068_0063521 3300049584 Bacteria 2246
161 Ga0501071_0005969 3300049587 Bacteria 7888
162 Ga0501071_0048343 3300049587 Bacteria 3059
163 Ga0501071_0069706 3300049587 Bacteria 2561
164 Ga0501073_0003040 3300049589 Bacteria 12583
165 Ga0501074_0098478 3300049590 Bacteria 2093
166 Ga0501075_0000217 3300049591 Bacteria 30429
167 Ga0501075_0036521 3300049591 Bacteria 3668
168 Ga0501076_0001685 3300049592 Bacteria 14936
169 Ga0501076_0072346 3300049592 Bacteria 2759
170 Ga0501077_0043781 3300049593 Bacteria 2845
171 Ga0501077_0163170 3300049593 Bacteria 1415
172 Ga0501079_0000356 3300049741 Bacteria 29357
173 Ga0501079_0025958 3300049741 Bacteria 4493
174 Ga0501081_0113283 3300049743 Bacteria 1926
175 Ga0501044_0009809 3300049823 Bacteria 10412
176 Ga0501045_0035744 3300049824 Bacteria 3607
177 Ga0501045_0075685 3300049824 Bacteria 2479
178 nmdc:mga05p37_112149_c1 3300050507 Bacteria 3354
179 nmdc:mga09592_43218_c1 3300050508 Bacteria 3792
180 nmdc:mga0rr50_192074_c1 3300050513 Bacteria 1674
181 nmdc:mga08x19_432_c1 3300050514 Bacteria 28721
182 nmdc:mga0a205_193744_c1 3300050515 Bacteria 1924
183 Ga0500646_0009702 3300053090 Bacteria 2464
184 Ga0501084_0000753 3300054114 Bacteria 24684
185 Ga0501084_0069301 3300054114 Bacteria 2953
186 Ga0501084_0148945 3300054114 Bacteria 1972
187 Ga0501082_0000829 3300060353 Bacteria 27236
188 Ga0501082_0002659 3300060353 Bacteria 15623
189 Ga0530510_0037118 3300061734 Unclassified 3512
190 Ga0207708_10146633
191 Ga0070666_10139613
192 Ga0070680_100037743
193 Ga0070682_100084277
194 Ga0070660_100015169
195 Ga0070660_100093859
196 Ga0070661_100262219
197 Ga0070669_100118104
198 Ga0070675_100006097
199 Ga0070671_100150772
200 Ga0070674_100016741
201 Ga0070674_100096460
202 Ga0070659_100003218
203 Ga0070713_100099037
204 Ga0070711_100054753
205 Ga0070700_100068999
206 Ga0070678_100022185
207 Ga0070662_100083650
208 Ga0070681_10013757
209 Ga0070681_10014084
210 Ga0070681_10163450
211 Ga0070698_100045156
212 Ga0070698_100091381
213 Ga0070679_100248055
214 Ga0070686_100000438
215 Ga0070695_100000640
216 Ga0070695_100025971
217 Ga0070704_100001989
218 Ga0068855_100100466
219 Ga0068855_100126853
220 Ga0068857_100071637
221 Ga0068854_100008454
222 Ga0068856_100050850
223 Ga0068852_100139374
224 Ga0068859_100045105
225 Ga0068862_100070861
226 Ga0070717_10050453
227 Ga0075367_10124934
228 Ga0097621_100202949
229 Ga0075433_10021311
230 Ga0075429_100073465
231 Ga0075436_100000108
232 Ga0097620_100045104
233 Ga0075435_100224981
234 Ga0105240_10001748
235 Ga0105240_10081720
236 Ga0111539_10048238
237 Ga0114129_10007386
238 Ga0114129_10020431
239 Ga0114129_10154919
240 Ga0105248_10022163
241 Ga0105248_10119794
242 Ga0105237_10164431
243 Ga0105249_10034750
244 Ga0157369_10190628
245 Ga0157374_10019830
246 Ga0157380_10005386
247 Ga0157380_10274807
248 Ga0157376_10133670
249 Ga0213872_10002066
250 Ga0213872_10017869
251 Ga0213875_10005490
252 Ga0207643_10024064
253 Ga0207705_10162436
254 Ga0207707_10009692
255 Ga0207707_10130934
256 Ga0207695_10006690
257 Ga0207695_10016048
258 Ga0207663_10164283
259 Ga0207657_10058151
260 Ga0207657_10099268
261 Ga0207652_10136812
262 Ga0207694_10051899
263 Ga0207659_10015918
264 Ga0207690_10050665
265 Ga0207706_10070217
266 Ga0207669_10029371
267 Ga0207711_10016526
268 Ga0207711_10153748
269 Ga0207667_10001244
270 Ga0207708_10019802
271 Ga0207674_10117748
272 Ga0207675_100002502
273 Ga0207683_10035466
274 Ga0209588_1000001
275 Ga0207428_10019146
276 Ga0265338_10034012
277 Ga0265339_10018444
278 Ga0265316_10110384
279 Ga0307408_100017860
280 Ga0307408_100161534
281 Ga0265313_10062938
282 Ga0316575_10064522
283 Ga0265314_10000923
284 Ga0307406_10024769
285 Ga0307406_10036212
286 Ga0307409_100018023
287 Ga0307409_100051983
288 Ga0307409_100082873
289 Ga0307409_100232254
290 Ga0307414_10084594
291 Ga0307414_10113513
292 Ga0307411_10025460
293 Ga0307415_100012922
294 Ga0373930_0003342
295 Ga0373959_0001811
296 Ga0373938_0001023
297 Ga0373929_0002353
298 Ga0373940_0002799
299 Ga0373949_0001604
300 Ga0373951_0001636
301 Ga0373932_0001001
302 Ga0373939_0000747
303 Ga0373956_0084970
304 Ga0373960_0008376
305 Ga0373943_0006614
306 Ga0373942_0004032
307 Ga0373961_0001136
308 Ga0373931_0009113
309 Ga0373927_0001155
310 Ga0373927_0003638
311 Ga0373947_0036358
312 Ga0373925_0000408
313 Ga0373925_0182854
314 Ga0395899_0032961
315 Ga0395900_0209768
316 Ga0395905_0176576
317 Ga0436364_1473467
318 Ga0395901_0169289
319 Ga0436365_1757953
320 Ga0436360_0946981
321 Ga0436361_0129065
322 Ga0436361_0615999
323 Ga0439435_0014472
324 Ga0451577_0220863
325 Ga0451576_0009854
326 Ga0495629_0219739
327 Ga0495580_0129301
328 Ga0495621_0012655
329 Ga0495669_0026748
330 Ga0495674_0170481
331 Ga0495680_0094479
332 Ga0496108_0018282
333 Ga0496109_0201694
334 Ga0496112_0332822
335 Ga0496126_0003512
336 Ga0501033_0218302
337 Ga0501038_0011144
338 Ga0501038_0067530
339 Ga0501040_0001079
340 Ga0501041_0003139
341 Ga0501041_0021706
342 Ga0501042_0023420
343 Ga0501046_0006930
344 Ga0501047_0092350
345 Ga0501047_0110703
346 Ga0501048_0009350
347 Ga0501048_0177109
348 Ga0501068_0009593
349 Ga0501068_0063521
350 Ga0501071_0005969
351 Ga0501071_0048343
352 Ga0501071_0069706
353 Ga0501073_0003040
354 Ga0501074_0098478
355 Ga0501075_0000217
356 Ga0501075_0036521
357 Ga0501076_0001685
358 Ga0501076_0072346
359 Ga0501077_0043781
360 Ga0501077_0163170
361 Ga0501079_0000356
362 Ga0501079_0025958
363 Ga0501081_0113283
364 Ga0501044_0009809
365 Ga0501045_0035744
366 Ga0501045_0075685
367 nmdc:mga05p37_112149_c1
368 nmdc:mga09592_43218_c1
369 nmdc:mga0rr50_192074_c1
370 nmdc:mga08x19_432_c1
371 nmdc:mga0a205_193744_c1
372 Ga0500646_0009702
373 Ga0501084_0000753
374 Ga0501084_0069301
375 Ga0501084_0148945
376 Ga0501082_0000829
377 Ga0501082_0002659
378 Ga0530510_0037118

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02784

Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

108

354

0.95

PF00278

Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

103

444

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3c5q-assembly1.cif.gz_A-2 crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine 0.955 20 413
2qgh-assembly1.cif.gz_A-2 crystal structure of diaminopimelate decarboxylase from helicobacter pylori complexed with l-lysine 0.9547 20 413
3vab-assembly1.cif.gz_B crystal structure of diaminopimelate decarboxylase from brucella melitensis bound to plp 0.9456 3 414
2p3e-assembly1.cif.gz_B crystal structure of aq1208 from aquifex aeolicus 0.9454 2 414
4xg1-assembly2.cif.gz_D psychromonas ingrahamii diaminopimelate decarboxylase with llp 0.945 5 414
ID Description Score Start End Superfamily
af_Q58497_297_438_2.40.37.10 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9523 278 414 2.40.37.10
3n2bB01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9488 277 414 2.40.37.10
1twiC01 Mainly Beta;Beta Barrel;Lyase, Ornithine Decarboxylase; Chain A, domain 1;Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.9462 277 414 2.40.37.10
2qghA02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9422 38 276 3.20.20.10
4xg1A02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9418 36 276 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A382GS38-F1-model_v4 Orn/DAP/Arg decarboxylase 2 N-terminal domain-containing protein 0.9742 6 156 GO:0008836
GO:0009089
AF-A0A7C5GQ92-F1-model_v4 Diaminopimelate decarboxylase 0.9741 3 111 GO:0006596
GO:0008836
GO:0009089
AF-A0A7V5KT84-F1-model_v4 Diaminopimelate decarboxylase 0.9727 5 156 GO:0008836
GO:0009089
AF-A0A661KV00-F1-model_v4 Diaminopimelate decarboxylase 0.9714 3 143 GO:0008836
GO:0009089
AF-A0A4Q6F0H3-F1-model_v4 deleted 0.9701 5 130

Map