F289112

General Info

Members Datasets Scaffolds Average Seq Length
188 107 376 443

Family's Representative Sequence

Representative Sequence 3300005985|Ga0081539_10003749|Ga0081539_1000374918
Length 489
Sequence VSPEDTGSQSRRGLGFPVGRIVIAPARISAFHALRALASGRSDLPAALARTRTQLSDERDRSLAAEIVSGTVRWQRSLDHVVSAFARRPLNTLDADVLTILRLSVYQLLHLDRVPASAVVDDAVDLTRAARKLSAAGFVNAILRALLRQKNRLPLPPRPVDPEPFAGDNESLEDAARTFMGGNNRDAAVAYLGITHSHPDWLVQRWLDRYGFDATERWVRFNNDTPRLTIRTNRLRGGRERLAQSLAREGIETEPTSYAPDGLTILAGNPLRLPPDGSFFVQDEASQLVPLVVGARKDERILDLCASPGGKTTAMAADMYDSGAVVSCDVREKRLALLRHTVEASGARHVHIVHVGSTGPLPFTRAFDRVLVDAPCSGLGTLRRDPDIKWRRTETELPTLAHHQVALLERAAVVLKPGGRLVYATCSSEPEENEQVVTAFLARHPELRLIDLRSELSPHLHPLLDDRGMLRTLPFAHGLEAFFAAALTG

Samples

Sample ID Description Type Environment
1 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
22 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
26 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
35 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
43 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
61 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
62 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
72 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
73 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
74 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
75 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
76 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
77 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
78 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
79 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
80 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
81 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
82 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
94 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
95 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
96 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
97 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
100 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
101 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
102 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
103 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
104 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
105 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
106 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
107 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.53
Nodule 0
Rhizoplane 1.6
Rhizosphere 97.34
Stem 0
Stem Tuber 0
Unclassified 8.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081539_10003749 3300005985 Bacteria 18053
2 Ga0065712_10012435 3300005290 Bacteria 3693
3 Ga0065712_10067826 3300005290 Bacteria 27846
4 Ga0070676_10148835 3300005328 Bacteria 1497
5 Ga0070670_100010775 3300005331 Bacteria 7810
6 Ga0070670_100109449 3300005331 Unclassified 2380
7 Ga0070689_100017529 3300005340 Bacteria 5262
8 Ga0070675_100041069 3300005354 Bacteria 3778
9 Ga0070675_100101741 3300005354 Bacteria 2421
10 Ga0070675_100116856 3300005354 Bacteria 2263
11 Ga0070675_100133141 3300005354 Unclassified 2120
12 Ga0070671_100040086 3300005355 Bacteria 3888
13 Ga0070673_100003445 3300005364 Bacteria 9858
14 Ga0070673_100008657 3300005364 Bacteria 6780
15 Ga0070673_100106420 3300005364 Bacteria 2319
16 Ga0070673_100166940 3300005364 Unclassified 1876
17 Ga0070688_100177983 3300005365 Bacteria 1473
18 Ga0070667_100219000 3300005367 Unclassified 1694
19 Ga0070705_100000088 3300005440 Bacteria 51329
20 Ga0070694_100007737 3300005444 Bacteria 6557
21 Ga0070678_100026637 3300005456 Bacteria 3912
22 Ga0070685_10069498 3300005466 Unclassified 2083
23 Ga0070706_100278249 3300005467 Bacteria 1562
24 Ga0070707_100040267 3300005468 Bacteria 4471
25 Ga0070707_100093302 3300005468 Bacteria 2914
26 Ga0070698_100011468 3300005471 Bacteria 9405
27 Ga0070698_100049965 3300005471 Bacteria 4267
28 Ga0070698_100107417 3300005471 Bacteria 2759
29 Ga0070698_100162347 3300005471 Unclassified 2178
30 Ga0070699_100000988 3300005518 Bacteria 26474
31 Ga0070679_100132127 3300005530 Bacteria 2477
32 Ga0070672_100010401 3300005543 Bacteria 6454
33 Ga0070672_100022168 3300005543 Bacteria 4659
34 Ga0070672_100073149 3300005543 Unclassified 2731
35 Ga0070695_100000021 3300005545 Bacteria 60669
36 Ga0070696_100000016 3300005546 Bacteria 76371
37 Ga0070696_100004021 3300005546 Bacteria 9804
38 Ga0070696_100156191 3300005546 Bacteria 1678
39 Ga0068859_100068520 3300005617 Bacteria 3582
40 Ga0068864_100031908 3300005618 Bacteria 4472
41 Ga0068864_100104093 3300005618 Bacteria 2521
42 Ga0068870_10035072 3300005840 Bacteria 2572
43 Ga0081538_10039664 3300005981 Bacteria 3016
44 Ga0081539_10000106 3300005985 Bacteria 195771
45 Ga0075367_10030760 3300006178 Bacteria 3080
46 Ga0097621_100034255 3300006237 Bacteria 4050
47 Ga0075428_100003630 3300006844 Bacteria 16919
48 Ga0075428_100011815 3300006844 Bacteria 9718
49 Ga0075430_100003855 3300006846 Bacteria 12629
50 Ga0075430_100017760 3300006846 Bacteria 6056
51 Ga0075430_100064364 3300006846 Bacteria 3081
52 Ga0075430_100075252 3300006846 Bacteria 2831
53 Ga0075431_100003017 3300006847 Bacteria 16287
54 Ga0075431_100052971 3300006847 Bacteria 4184
55 Ga0075433_10001172 3300006852 Bacteria 19062
56 Ga0075433_10051853 3300006852 Bacteria 3574
57 Ga0075433_10076733 3300006852 Bacteria 2943
58 Ga0075434_100000626 3300006871 Bacteria 27295
59 Ga0075434_100000656 3300006871 Bacteria 26835
60 Ga0075434_100001393 3300006871 Bacteria 20300
61 Ga0075434_100016592 3300006871 Bacteria 7082
62 Ga0075434_100034398 3300006871 Bacteria 5004
63 Ga0075429_100033446 3300006880 Bacteria 4468
64 Ga0075429_100037437 3300006880 Bacteria 4223
65 Ga0075429_100072555 3300006880 Bacteria 2998
66 Ga0097620_100068528 3300006931 Bacteria 3582
67 Ga0075435_100000424 3300007076 Bacteria 25964
68 Ga0075435_100009954 3300007076 Bacteria 6926
69 Ga0111539_10000161 3300009094 Bacteria 76584
70 Ga0111539_10000253 3300009094 Bacteria 64123
71 Ga0111539_10006812 3300009094 Bacteria 14693
72 Ga0111539_10022371 3300009094 Bacteria 7770
73 Ga0111539_10073037 3300009094 Bacteria 4044
74 Ga0111539_10101868 3300009094 Bacteria 3371
75 Ga0111539_10163014 3300009094 Bacteria 2608
76 Ga0111539_10244592 3300009094 Bacteria 2089
77 Ga0114129_10003607 3300009147 Bacteria 21767
78 Ga0114129_10005104 3300009147 Bacteria 18487
79 Ga0114129_10010050 3300009147 Bacteria 13492
80 Ga0114129_10033104 3300009147 Bacteria 7305
81 Ga0114129_10072141 3300009147 Bacteria 4814
82 Ga0114129_10090233 3300009147 Bacteria 4248
83 Ga0114129_10119548 3300009147 Bacteria 3629
84 Ga0114129_10439698 3300009147 Bacteria 1712
85 Ga0105243_10177432 3300009148 Bacteria 1850
86 Ga0105248_10135365 3300009177 Bacteria 2779
87 Ga0157375_10123447 3300013308 Bacteria 2702
88 Ga0163163_10005951 3300014325 Bacteria 10612
89 Ga0157377_10065336 3300014745 Bacteria 2090
90 Ga0207707_10067961 3300025912 Bacteria 3104
91 Ga0207660_10175833 3300025917 Bacteria 1660
92 Ga0207652_10126702 3300025921 Bacteria 2275
93 Ga0207646_10104152 3300025922 Bacteria 2545
94 Ga0207681_10032854 3300025923 Bacteria 3400
95 Ga0207650_10128654 3300025925 Unclassified 1979
96 Ga0207650_10176280 3300025925 Bacteria 1702
97 Ga0207659_10000879 3300025926 Bacteria 17854
98 Ga0207659_10068501 3300025926 Bacteria 2581
99 Ga0207644_10024548 3300025931 Bacteria 4140
100 Ga0207709_10040354 3300025935 Bacteria 2794
101 Ga0207670_10087063 3300025936 Bacteria 2200
102 Ga0207691_10003124 3300025940 Bacteria 16174
103 Ga0207661_10005260 3300025944 Bacteria 9105
104 Ga0207651_10000566 3300025960 Bacteria 15605
105 Ga0207651_10109201 3300025960 Bacteria 2072
106 Ga0207651_10158585 3300025960 Unclassified 1771
107 Ga0207676_10010580 3300026095 Bacteria 6576
108 Ga0207676_10120568 3300026095 Bacteria 2211
109 Ga0207675_100102838 3300026118 Unclassified 2692
110 Ga0207428_10005133 3300027907 Bacteria 12267
111 Ga0207428_10006675 3300027907 Bacteria 10597
112 Ga0307513_10239047 3300031456 Unclassified 1623
113 Ga0307405_10000896 3300031731 Bacteria 11820
114 Ga0307413_10012321 3300031824 Bacteria 4252
115 Ga0307413_10013614 3300031824 Bacteria 4096
116 Ga0307410_10032419 3300031852 Bacteria 3362
117 Ga0307406_10042636 3300031901 Bacteria 2834
118 Ga0307407_10026962 3300031903 Bacteria 3051
119 Ga0307412_10016850 3300031911 Bacteria 4364
120 Ga0307409_100108442 3300031995 Bacteria 2322
121 Ga0307416_100012354 3300032002 Bacteria 5750
122 Ga0307416_100045322 3300032002 Bacteria 3462
123 Ga0307414_10018041 3300032004 Bacteria 4333
124 Ga0373937_0018052 3300036401 Bacteria 6292
125 Ga0373937_0048996 3300036401 Bacteria 3868
126 Ga0373925_0069898 3300037068 Bacteria 2653
127 Ga0451576_0027569 3300045051 Bacteria 6099
128 Ga0451576_0051942 3300045051 Bacteria 4296
129 Ga0495603_0016614 3300046455 Bacteria 4453
130 Ga0495629_0010215 3300046459 Bacteria 6839
131 Ga0495594_0004637 3300046499 Bacteria 7079
132 Ga0495594_0014029 3300046499 Bacteria 4196
133 Ga0495643_0006118 3300046522 Bacteria 7997
134 Ga0495642_0004641 3300046528 Bacteria 5322
135 Ga0495645_0013479 3300046543 Bacteria 5781
136 Ga0495656_0014622 3300046615 Bacteria 2946
137 Ga0495659_0046008 3300046664 Bacteria 1575
138 Ga0495588_0008824 3300046674 Bacteria 4635
139 Ga0495658_0047151 3300046683 Bacteria 2425
140 Ga0496109_0281902 3300048912 Bacteria 1566
141 Ga0496110_0098693 3300048913 Bacteria 2618
142 Ga0496112_0029044 3300048915 Bacteria 5346
143 Ga0501034_0035471 3300049571 Bacteria 5056
144 Ga0501034_0193419 3300049571 Unclassified 1996
145 Ga0501036_0008248 3300049572 Bacteria 8539
146 Ga0501039_0017428 3300049575 Bacteria 5509
147 Ga0501039_0151043 3300049575 Unclassified 1825
148 Ga0501040_0026771 3300049576 Bacteria 3879
149 Ga0501041_0067047 3300049577 Bacteria 2200
150 Ga0501042_0003775 3300049578 Bacteria 9575
151 Ga0501042_0007112 3300049578 Bacteria 7316
152 Ga0501048_0189673 3300049582 Bacteria 1457
153 Ga0501067_0105836 3300049583 Bacteria 1563
154 Ga0501072_0032979 3300049588 Bacteria 4057
155 Ga0501072_0083183 3300049588 Bacteria 2537
156 Ga0501075_0011967 3300049591 Bacteria 6157
157 Ga0501075_0103004 3300049591 Unclassified 2168
158 Ga0501079_0056916 3300049741 Bacteria 3017
159 Ga0501045_0176688 3300049824 Bacteria 1590
160 nmdc:mga05p37_130597_c1 3300050507 Bacteria 3082
161 nmdc:mga05p37_36220_c1 3300050507 Bacteria 6055
162 nmdc:mga05p37_37155_c1 3300050507 Bacteria 5973
163 nmdc:mga05p37_82411_c1 3300050507 Bacteria 3963
164 nmdc:mga09592_231339_c1 3300050508 Bacteria 1602
165 nmdc:mga09592_31693_c1 3300050508 Bacteria 4405
166 nmdc:mga09592_73450_c1 3300050508 Bacteria 2906
167 nmdc:mga0qj67_123476_c1 3300050509 Unclassified 2095
168 nmdc:mga0qj67_158121_c1 3300050509 Bacteria 1840
169 nmdc:mga0qj67_249176_c1 3300050509 Bacteria 1441
170 nmdc:mga08y16_103870_c1 3300050511 Unclassified 2958
171 nmdc:mga08y16_10686_c1 3300050511 Bacteria 9632
172 nmdc:mga08y16_16048_c1 3300050511 Bacteria 7874
173 nmdc:mga08y16_2431_c1 3300050511 Bacteria 19130
174 nmdc:mga08y16_55214_c1 3300050511 Bacteria 4151
175 nmdc:mga0n895_10073_c1 3300050512 Bacteria 8319
176 nmdc:mga0n895_1055_c1 3300050512 Bacteria 20087
177 nmdc:mga0n895_60408_c1 3300050512 Bacteria 3740
178 nmdc:mga0n895_8488_c1 3300050512 Bacteria 8897
179 nmdc:mga0rr50_59740_c1 3300050513 Bacteria 2864
180 nmdc:mga0a205_1606_c1 3300050515 Bacteria 19435
181 nmdc:mga0a205_1911_c1 3300050515 Bacteria 18090
182 nmdc:mga0a205_47702_c1 3300050515 Bacteria 3575
183 nmdc:mga0a205_54635_c1 3300050515 Bacteria 3856
184 Ga0590071_000262 3300059421 Bacteria 15367
185 Ga0590071_000482 3300059421 Bacteria 11650
186 Ga0590074_000527 3300059423 Bacteria 5724
187 Ga0590077_000100 3300059426 Bacteria 22536
188 Ga0590077_000524 3300059426 Bacteria 10593
189 Ga0081539_10003749
190 Ga0065712_10012435
191 Ga0065712_10067826
192 Ga0070676_10148835
193 Ga0070670_100010775
194 Ga0070670_100109449
195 Ga0070689_100017529
196 Ga0070675_100041069
197 Ga0070675_100101741
198 Ga0070675_100116856
199 Ga0070675_100133141
200 Ga0070671_100040086
201 Ga0070673_100003445
202 Ga0070673_100008657
203 Ga0070673_100106420
204 Ga0070673_100166940
205 Ga0070688_100177983
206 Ga0070667_100219000
207 Ga0070705_100000088
208 Ga0070694_100007737
209 Ga0070678_100026637
210 Ga0070685_10069498
211 Ga0070706_100278249
212 Ga0070707_100040267
213 Ga0070707_100093302
214 Ga0070698_100011468
215 Ga0070698_100049965
216 Ga0070698_100107417
217 Ga0070698_100162347
218 Ga0070699_100000988
219 Ga0070679_100132127
220 Ga0070672_100010401
221 Ga0070672_100022168
222 Ga0070672_100073149
223 Ga0070695_100000021
224 Ga0070696_100000016
225 Ga0070696_100004021
226 Ga0070696_100156191
227 Ga0068859_100068520
228 Ga0068864_100031908
229 Ga0068864_100104093
230 Ga0068870_10035072
231 Ga0081538_10039664
232 Ga0081539_10000106
233 Ga0075367_10030760
234 Ga0097621_100034255
235 Ga0075428_100003630
236 Ga0075428_100011815
237 Ga0075430_100003855
238 Ga0075430_100017760
239 Ga0075430_100064364
240 Ga0075430_100075252
241 Ga0075431_100003017
242 Ga0075431_100052971
243 Ga0075433_10001172
244 Ga0075433_10051853
245 Ga0075433_10076733
246 Ga0075434_100000626
247 Ga0075434_100000656
248 Ga0075434_100001393
249 Ga0075434_100016592
250 Ga0075434_100034398
251 Ga0075429_100033446
252 Ga0075429_100037437
253 Ga0075429_100072555
254 Ga0097620_100068528
255 Ga0075435_100000424
256 Ga0075435_100009954
257 Ga0111539_10000161
258 Ga0111539_10000253
259 Ga0111539_10006812
260 Ga0111539_10022371
261 Ga0111539_10073037
262 Ga0111539_10101868
263 Ga0111539_10163014
264 Ga0111539_10244592
265 Ga0114129_10003607
266 Ga0114129_10005104
267 Ga0114129_10010050
268 Ga0114129_10033104
269 Ga0114129_10072141
270 Ga0114129_10090233
271 Ga0114129_10119548
272 Ga0114129_10439698
273 Ga0105243_10177432
274 Ga0105248_10135365
275 Ga0157375_10123447
276 Ga0163163_10005951
277 Ga0157377_10065336
278 Ga0207707_10067961
279 Ga0207660_10175833
280 Ga0207652_10126702
281 Ga0207646_10104152
282 Ga0207681_10032854
283 Ga0207650_10128654
284 Ga0207650_10176280
285 Ga0207659_10000879
286 Ga0207659_10068501
287 Ga0207644_10024548
288 Ga0207709_10040354
289 Ga0207670_10087063
290 Ga0207691_10003124
291 Ga0207661_10005260
292 Ga0207651_10000566
293 Ga0207651_10109201
294 Ga0207651_10158585
295 Ga0207676_10010580
296 Ga0207676_10120568
297 Ga0207675_100102838
298 Ga0207428_10005133
299 Ga0207428_10006675
300 Ga0307513_10239047
301 Ga0307405_10000896
302 Ga0307413_10012321
303 Ga0307413_10013614
304 Ga0307410_10032419
305 Ga0307406_10042636
306 Ga0307407_10026962
307 Ga0307412_10016850
308 Ga0307409_100108442
309 Ga0307416_100012354
310 Ga0307416_100045322
311 Ga0307414_10018041
312 Ga0373937_0018052
313 Ga0373937_0048996
314 Ga0373925_0069898
315 Ga0451576_0027569
316 Ga0451576_0051942
317 Ga0495603_0016614
318 Ga0495629_0010215
319 Ga0495594_0004637
320 Ga0495594_0014029
321 Ga0495643_0006118
322 Ga0495642_0004641
323 Ga0495645_0013479
324 Ga0495656_0014622
325 Ga0495659_0046008
326 Ga0495588_0008824
327 Ga0495658_0047151
328 Ga0496109_0281902
329 Ga0496110_0098693
330 Ga0496112_0029044
331 Ga0501034_0035471
332 Ga0501034_0193419
333 Ga0501036_0008248
334 Ga0501039_0017428
335 Ga0501039_0151043
336 Ga0501040_0026771
337 Ga0501041_0067047
338 Ga0501042_0003775
339 Ga0501042_0007112
340 Ga0501048_0189673
341 Ga0501067_0105836
342 Ga0501072_0032979
343 Ga0501072_0083183
344 Ga0501075_0011967
345 Ga0501075_0103004
346 Ga0501079_0056916
347 Ga0501045_0176688
348 nmdc:mga05p37_130597_c1
349 nmdc:mga05p37_36220_c1
350 nmdc:mga05p37_37155_c1
351 nmdc:mga05p37_82411_c1
352 nmdc:mga09592_231339_c1
353 nmdc:mga09592_31693_c1
354 nmdc:mga09592_73450_c1
355 nmdc:mga0qj67_123476_c1
356 nmdc:mga0qj67_158121_c1
357 nmdc:mga0qj67_249176_c1
358 nmdc:mga08y16_103870_c1
359 nmdc:mga08y16_10686_c1
360 nmdc:mga08y16_16048_c1
361 nmdc:mga08y16_2431_c1
362 nmdc:mga08y16_55214_c1
363 nmdc:mga0n895_10073_c1
364 nmdc:mga0n895_1055_c1
365 nmdc:mga0n895_60408_c1
366 nmdc:mga0n895_8488_c1
367 nmdc:mga0rr50_59740_c1
368 nmdc:mga0a205_1606_c1
369 nmdc:mga0a205_1911_c1
370 nmdc:mga0a205_47702_c1
371 nmdc:mga0a205_54635_c1
372 Ga0590071_000262
373 Ga0590071_000482
374 Ga0590074_000527
375 Ga0590077_000100
376 Ga0590077_000524

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22458

RsmF-B_ferredox

Methyltr_RsmF/B-like, ferredoxin-like domain

198

272

0.96

PF01189

Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

290

488

0.92

PF01029

NusB

NusB family

24

148

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3r2d-assembly1.cif.gz_A crystal structure of antitermination factors nusb and nuse in complex with dsrna 0.9208 15 112
4eya-assembly1.cif.gz_A crystal structure of a plectonemic rna supercoil 0.9065 15 116
2frx-assembly2.cif.gz_B crystal structure of yebu, a m5c rna methyltransferase from e.coli 0.8478 143 417
8i9z-assembly1.cif.gz_CP cryo-em structure of a chaetomium thermophilum pre-60s ribosomal subunit - state spb4 0.8457 130 417
8esq-assembly1.cif.gz_q ytm1 associated nascent 60s ribosome state 2 0.8443 127 417
ID Description Score Start End Superfamily
1tztA00 Mainly Alpha;Orthogonal Bundle;N-utilizing Substance Protein B Homolog; Chain A;NusB-like 0.9394 21 112 1.10.940.10
af_Q651X9_102_252_1.10.940.10 Mainly Alpha;Orthogonal Bundle;N-utilizing Substance Protein B Homolog; Chain A;NusB-like 0.9171 19 115 1.10.940.10
3r2cB00 Mainly Alpha;Orthogonal Bundle;N-utilizing Substance Protein B Homolog; Chain A;NusB-like 0.9137 15 112 1.10.940.10
af_Q2FZ67_2_133_1.10.940.10 Mainly Alpha;Orthogonal Bundle;N-utilizing Substance Protein B Homolog; Chain A;NusB-like 0.91 12 112 1.10.940.10
af_Q2FY45_1_129_1.10.940.10 Mainly Alpha;Orthogonal Bundle;N-utilizing Substance Protein B Homolog; Chain A;NusB-like 0.9087 5 108 1.10.940.10
ID Description Score Start End GO Terms
AF-A0A3N5ZLW3-F1-model_v4 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 0.9595 5 253 GO:0003723
GO:0006355
GO:0008168
GO:0032259
AF-A0A3M1DAZ0-F1-model_v4 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 0.9565 296 418 GO:0001510
GO:0003723
GO:0008173
AF-A0A2E1W322-F1-model_v4 16S rRNA (Cytosine(967)-C(5))-methyltransferase 0.9547 2 193 GO:0003723
GO:0006355
GO:0008168
GO:0032259
AF-A0A356IH09-F1-model_v4 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 0.9542 5 418 GO:0001510
GO:0003723
GO:0005737
GO:0006355
GO:0008173
AF-A0A524L875-F1-model_v4 Methyltransferase domain-containing protein 0.9539 232 418 GO:0001510
GO:0003723
GO:0008173

Map