F288547

General Info

Members Datasets Scaffolds Average Seq Length
187 158 106 830

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2939669807|2939672506
Length 915
Sequence LEVYRSKRDFKVTSEPAGGKAPRNRKAAKVEEAGHSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRGPSLDPSEKRLAVHVEDHPLEYGGFEGTIPKGEYGGGTVLVWDRGNWEPVGDPHKGYAKGHLEFELKGEKLHGRWHLVKMHGRPGEKRENWLLIKAEDEAARPPGAPDILEEMPDSVKTGRALEDVAGEEPGWSSKTGKIEHGEDEAEKAKPARKAGAKAKPEAAAKPAVKAKPPTKAKAPARAKAAGKDSSAKAEAASEDEAEPPPPLPDPAQFEGAKKMAMPASIEPELATLTDTPPAGERWIHEIKFDGYRLLAHVAAGRVKLLTRTGLDWTKKFGKEVAGALQALPIGTAWIDGELVVETDGGASDFSALQADLSEGRSDRFVFYVFDLLYLDGYDLRDLPLTQRQQLLAQVVAQSAPCLRLSQHFEDDGAVVFRHASRLGLEGIVSKVADSPYRSGRNKNWLKTKSSKRQEFVIGGYVPSTTSRRAIGSLVLGVQDGGALQHVGRVGTGFSVSVAEDLFKTLERMRTSESPFGSPLTAEEGRQVRFVRPDLVAEVEFRAWTADGHLRHASFRGLREDKPAVEITRETAAMDEKPASKKKPARGGPARSTVKLTHPDRVYWPDAGVTKQGLADYYAEIWPSIAPYITHRPLSLLRCPSGITGEQFFQKNAWKGLNEAIVLVDDPSTQEVEQLISIEDLDGLTALVQSAVLEIHPWGSTLDAWEKPDMIILDLDPGEGTDWQAVIDAAQEVRQRLADAGLAAFVKTSGGKGLHVVAPLAPKAEWPDIKAFTKGLADAMASDSPDLYVSTISKAKRPGKILIDYLRNQRGQTAVAPYSTRARPGAPVSAPLAWEELSPAIGPAYFTVLNMPTRLASLGTVPWADFRKAAKPLEIAPAGKKKARAAKK

Samples

Sample ID Description Type Environment
1 2508501127 Mesorhizobium sp. WSM2561 Isolate Nodule
2 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
3 2513237087 Azorhizobium doebereinerae UFLA1-100 Isolate Nodule
4 2523231067 Pleomorphomonas oryzae DSM 16300 Isolate Unclassified
5 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
6 2582581299 Rhizobium leguminosarum OV483 Isolate Rhizosphere
7 2582581304 Rhizobium sp. YR519 Isolate Rhizosphere
8 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
9 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
10 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
11 2597489875 Mesorhizobium ciceri ca181 Isolate Unclassified
12 2643221558 Rhizobium sp. Root149 Isolate Unclassified
13 2643221599 Rhizobium sp. Root708 Isolate Unclassified
14 2643221634 Rhizobium sp. Root1203 Isolate Unclassified
15 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
16 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
17 2643221718 Rhizobium sp. Root268 Isolate Unclassified
18 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
19 2738541293 Rhizobium sp. GV031 Isolate Unclassified
20 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
21 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
22 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
23 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
24 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
25 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
26 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
27 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
28 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
29 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
30 2802429633 Rhizobium anhuiense J3 Isolate Nodule
31 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
32 2828305725 Xanthobacter tagetidis DSM 11105 Isolate Unclassified
33 2834578030 Paracoccus thiocyanatus SST Isolate Unclassified
34 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
35 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
36 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
37 2841734538 Mesorhizobium sp. M6A.T.Cr.TU.016.01.1.1 Isolate Nodule
38 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
39 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
40 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
41 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
42 2854911287 Brucella lupini LUP21 Isolate Unclassified
43 2856342000 Mesorhizobium sp. M5C.F.Cr.IN.023.01.1.1 Isolate Nodule
44 2871474448 Mesorhizobium sp. M6A.T.Cr.TU.017.01.1.1 Isolate Nodule
45 2874123672 Mesorhizobium sp. M00.F.Ca.ET.216.01.1.1 Isolate Nodule
46 2888343758 Mesorhizobium sp. AA22 Isolate Unclassified
47 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
48 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
49 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
50 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
51 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
52 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
53 2919679072 Pseudotabrizicola sp. 4114 Isolate Unclassified
54 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
55 2924754689 Mesorhizobium sp. M5C.F.Ca.IN.020.32.2.1 Isolate Nodule
56 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
57 2937836603 Mesorhizobium sp. M6A.T.Cr.TU.014.01.1.1 Isolate Nodule
58 2939669807 Kaistia defluvii 3207 Isolate Rhizosphere
59 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
60 2958071322 Mesorhizobium sp. M6A.T.Ce.TU.016.01.1.1 Isolate Nodule
61 2970524798 Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 Isolate Nodule
62 2970540015 Mesorhizobium sp. M5C.F.Ca.IN.020.29.1.1 Isolate Nodule
63 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
64 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
65 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
66 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
67 3005452660 Rhizobium grahamii BG7 Isolate Unclassified
68 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
69 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
70 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
71 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
72 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
73 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
74 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
75 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
76 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
77 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
78 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
79 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
80 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
81 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
82 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
83 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
84 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
85 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
86 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
87 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
88 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
89 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
90 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
91 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
92 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
93 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
94 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
95 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
96 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
97 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
100 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
101 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
102 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
103 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
104 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
105 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
106 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
107 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
108 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
109 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
110 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
111 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
112 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
115 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
116 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
117 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
118 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
119 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
120 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
123 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
124 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
125 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
126 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
135 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
140 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
141 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
142 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
143 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
144 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
145 641228493 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
146 643348555 Gluconacetobacter diazotrophicus PA1 5 Isolate Unclassified
147 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
148 8004395343 Mesorhizobium sp. M5C.F.Ca.IN.020.14.1.1 Isolate Nodule
149 8004633249 Mesorhizobium sp. M6A.T.Ce.TU.002.03.1.1 Isolate Nodule
150 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
151 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
152 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
153 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
154 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
155 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
156 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
157 8055617313 Mesorhizobium onobrychidis OM4 Isolate Nodule
158 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 56.68
Metatranscriptomes 0
Isolates 43.32

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.63
Nodule 14.97
Rhizoplane 3.21
Rhizosphere 30.48
Stem 0
Stem Tuber 0
Unclassified 41.71

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000123 3300001979 Bacteria 28912
2 JGI25155J39150_1000027 3300002704 Bacteria 123955
3 JGI25156J39149_1000008 3300002705 Bacteria 229035
4 JGI25162J39368_1000196 3300002737 Bacteria 63573
5 JGI25154J39366_1000050 3300002738 Bacteria 124480
6 JGI25157J39369_1000028 3300002741 Bacteria 147384
7 JGI25152J39213_1001705 3300002773 Bacteria 9026
8 JGI25150J39212_1000164 3300002774 Bacteria 37406
9 JGI25151J46595_10000201 3300003187 Bacteria 73412
10 JGI25151J46595_10010950 3300003187 Bacteria 4193
11 JGI25406J46586_10001170 3300003203 Bacteria 12342
12 JGI25165J46597_1000292 3300003214 Bacteria 63577
13 JGI25153J46596_10000641 3300003215 Bacteria 21344
14 rootH1_10053106 3300003316 Bacteria 8258
15 rootH1_10003005 3300003323 Bacteria 3996
16 Ga0070709_10020665 3300005434 Bacteria 3824
17 Ga0070665_100013380 3300005548 Bacteria 8258
18 Ga0081539_10002783 3300005985 Bacteria 23498
19 Ga0075428_100010519 3300006844 Bacteria 10283
20 Ga0075428_100051065 3300006844 Bacteria 4534
21 Ga0213875_10000030 3300021388 Bacteria 178500
22 Ga0209435_100020 3300025206 Bacteria 229105
23 Ga0209437_100312 3300025233 Bacteria 65593
24 Ga0207425_1000055 3300025245 Bacteria 152820
25 Ga0209646_1000070 3300025246 Bacteria 229105
26 Ga0209026_1000057 3300025250 Bacteria 229105
27 Ga0209759_1000047 3300025256 Bacteria 229105
28 Ga0209129_1000029 3300025258 Bacteria 401149
29 Ga0209233_1000230 3300025261 Bacteria 97941
30 Ga0209025_1000070 3300025294 Bacteria 287776
31 Ga0209025_1000148 3300025294 Bacteria 179802
32 Ga0209758_1000094 3300025297 Bacteria 241068
33 Ga0207689_10028125 3300025942 Bacteria 4701
34 Ga0207702_10063946 3300026078 Bacteria 3148
35 Ga0209371_1001722 3300027312 Bacteria 13838
36 Ga0307515_10001651 3300028794 Bacteria 49639
37 Ga0268256_1000785 3300030500 Bacteria 22910
38 Ga0307508_10029290 3300031616 Bacteria 4978
39 Ga0307412_10000770 3300031911 Bacteria 18538
40 Ga0395900_0021858 3300037418 Bacteria 6541
41 Ga0395900_0050316 3300037418 Bacteria 4292
42 Ga0436364_1121193 3300037853 Bacteria 45546
43 Ga0436364_1271329 3300037853 Bacteria 8687
44 Ga0395901_0087923 3300038443 Bacteria 3249
45 Ga0436361_0891000 3300039447 Bacteria 13018
46 Ga0450923_001262 3300042125 Bacteria 3292
47 Ga0450896_000196 3300042133 Bacteria 5247
48 Ga0450908_000503 3300042184 Bacteria 7529
49 Ga0466957_0002160 3300044842 Bacteria 10526
50 Ga0495629_0000006 3300046459 Bacteria 389181
51 Ga0495638_0013123 3300046460 Bacteria 5655
52 Ga0495639_0001350 3300046475 Bacteria 11019
53 Ga0495583_0004560 3300046506 Bacteria 9853
54 Ga0495647_0008811 3300046681 Bacteria 3399
55 Ga0495658_0000071 3300046683 Bacteria 52286
56 Ga0495624_0024551 3300046690 Bacteria 3965
57 Ga0495581_0020302 3300047315 Bacteria 3857
58 Ga0495604_0034491 3300047317 Bacteria 4002
59 Ga0495680_0010091 3300047322 Bacteria 8444
60 Ga0495614_0002726 3300048089 Bacteria 7855
61 Ga0496101_0014401 3300048904 Bacteria 5314
62 Ga0496105_0003980 3300048908 Bacteria 11058
63 Ga0496110_0005153 3300048913 Bacteria 10215
64 Ga0496116_0006473 3300048919 Bacteria 10611
65 Ga0496116_0008589 3300048919 Bacteria 8839
66 Ga0496116_0013009 3300048919 Bacteria 6748
67 Ga0496116_0027211 3300048919 Bacteria 4166
68 Ga0496116_0033733 3300048919 Bacteria 3626
69 Ga0496117_0001756 3300048920 Bacteria 29818
70 Ga0496117_0008280 3300048920 Bacteria 9896
71 Ga0496119_0003396 3300048922 Bacteria 16541
72 Ga0496121_0004077 3300048924 Bacteria 20061
73 Ga0496121_0007061 3300048924 Bacteria 13635
74 Ga0496122_0000032 3300048925 Bacteria 327099
75 Ga0496122_0005792 3300048925 Bacteria 14545
76 Ga0496122_0007950 3300048925 Bacteria 11597
77 Ga0496122_0008153 3300048925 Bacteria 11404
78 Ga0496123_0000093 3300048926 Bacteria 179205
79 Ga0496123_0004091 3300048926 Bacteria 15678
80 Ga0496123_0006442 3300048926 Bacteria 11373
81 Ga0496123_0011258 3300048926 Bacteria 7776
82 Ga0496123_0016489 3300048926 Bacteria 5996
83 Ga0496123_0030441 3300048926 Bacteria 3951
84 Ga0496124_0001614 3300048927 Bacteria 32295
85 Ga0496124_0003920 3300048927 Bacteria 17772
86 Ga0496124_0004577 3300048927 Bacteria 16051
87 Ga0496124_0006755 3300048927 Bacteria 12400
88 Ga0496124_0041402 3300048927 Bacteria 3975
89 Ga0496124_0065360 3300048927 Bacteria 3033
90 Ga0496125_0000041 3300048928 Bacteria 310158
91 Ga0496125_0003441 3300048928 Bacteria 19173
92 Ga0496125_0022272 3300048928 Bacteria 5888
93 Ga0496125_0035369 3300048928 Bacteria 4383
94 Ga0496126_0000299 3300048929 Bacteria 105208
95 Ga0501034_0002441 3300049571 Bacteria 22430
96 Ga0501034_0005760 3300049571 Bacteria 13476
97 Ga0501034_0087784 3300049571 Bacteria 3109
98 Ga0501038_0022142 3300049574 Bacteria 5696
99 Ga0501043_0037523 3300049579 Bacteria 3811
100 Ga0501047_0051904 3300049581 Bacteria 3963
101 nmdc:mga09592_5623_c1 3300050508 Bacteria 10217
102 Ga0495619_0001189 3300053085 Bacteria 17147
103 Ga0500644_0001730 3300053088 Bacteria 5670
104 Ga0500560_000830 3300053107 Bacteria 4777
105 Ga0500618_000778 3300053125 Bacteria 17927
106 Ga0500622_0001964 3300053156 Bacteria 15479

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048922 Ga0496119_0003396 Ga0496119_0003396_13_2163 697
2 iso_pu_bacteria 8004395343 8004402495 732
3 3300048919 Ga0496116_0008589 Ga0496116_0008589_3878_6409 763
4 3300048919 Ga0496116_0027211 Ga0496116_0027211_1300_3831 763
5 3300048926 Ga0496123_0030441 Ga0496123_0030441_1272_3803 763
6 3300048927 Ga0496124_0065360 Ga0496124_0065360_195_2726 763
7 3300031911 Ga0307412_10000770 Ga0307412_100007707 765
8 3300048919 Ga0496116_0033733 Ga0496116_0033733_552_3083 765
9 3300048924 Ga0496121_0004077 Ga0496121_0004077_14665_17196 765
10 3300048926 Ga0496123_0016489 Ga0496123_0016489_2826_5357 765
11 3300048927 Ga0496124_0041402 Ga0496124_0041402_1304_3835 765
12 3300002773 JGI25152J39213_1001705 JGI25152J39213_10017055 766
13 3300002774 JGI25150J39212_1000164 JGI25150J39212_100016428 766
14 3300003187 JGI25151J46595_10000201 JGI25151J46595_1000020163 766
15 3300003215 JGI25153J46596_10000641 JGI25153J46596_100006414 766
16 3300025245 Ga0207425_1000055 Ga0207425_10000559 766
17 3300025258 Ga0209129_1000029 Ga0209129_1000029210 766
18 3300025294 Ga0209025_1000070 Ga0209025_1000070172 766
19 3300025297 Ga0209758_1000094 Ga0209758_100009463 766
20 3300048919 Ga0496116_0013009 Ga0496116_0013009_336_2867 766
21 3300048924 Ga0496121_0007061 Ga0496121_0007061_5906_8437 766
22 3300048925 Ga0496122_0008153 Ga0496122_0008153_6296_8827 766
23 3300048926 Ga0496123_0004091 Ga0496123_0004091_7066_9597 766
24 3300048927 Ga0496124_0006755 Ga0496124_0006755_364_2895 766
25 3300048928 Ga0496125_0003441 Ga0496125_0003441_7351_9882 766
26 3300046459 Ga0495629_0000006 Ga0495629_0000006_11446_13902 777
27 3300046475 Ga0495639_0001350 Ga0495639_0001350_5615_8071 777
28 3300046681 Ga0495647_0008811 Ga0495647_0008811_317_2773 777
29 3300046683 Ga0495658_0000071 Ga0495658_0000071_6264_8720 777
30 3300047315 Ga0495581_0020302 Ga0495581_0020302_473_2929 777
31 3300047322 Ga0495680_0010091 Ga0495680_0010091_4512_6968 777
32 3300048089 Ga0495614_0002726 Ga0495614_0002726_5379_7835 777
33 3300048919 Ga0496116_0006473 Ga0496116_0006473_6899_9430 777
34 3300048920 Ga0496117_0008280 Ga0496117_0008280_3421_5952 777
35 3300048925 Ga0496122_0005792 Ga0496122_0005792_6840_9371 777
36 3300048926 Ga0496123_0011258 Ga0496123_0011258_3849_6380 777
37 3300048927 Ga0496124_0003920 Ga0496124_0003920_8165_10696 777
38 3300053085 Ga0495619_0001189 Ga0495619_0001189_6398_8854 777
39 3300042125 Ga0450923_001262 Ga0450923_001262_491_3031 783
40 3300042133 Ga0450896_000196 Ga0450896_000196_1055_3595 783
41 3300042184 Ga0450908_000503 Ga0450908_000503_1055_3595 783
42 iso_pu_bacteria 2924754689 2924761424 786
43 3300006844 Ga0075428_100051065 Ga0075428_1000510653 788
44 3300006844 Ga0075428_100010519 Ga0075428_1000105194 797
45 3300050508 nmdc:mga09592_5623_c1 nmdc:mga09592_5623_c1_7274_9856 797
46 3300048927 Ga0496124_0004577 Ga0496124_0004577_2134_4713 799
47 3300048928 Ga0496125_0022272 Ga0496125_0022272_1393_3972 799
48 3300048904 Ga0496101_0014401 Ga0496101_0014401_2073_4610 806
49 3300048908 Ga0496105_0003980 Ga0496105_0003980_3890_6427 806
50 3300048913 Ga0496110_0005153 Ga0496110_0005153_7216_9753 807
51 3300048929 Ga0496126_0000299 Ga0496126_0000299_43597_46155 809
52 iso_pu_bacteria 2802429633 2806047649 812
53 3300048927 Ga0496124_0001614 Ga0496124_0001614_26377_28938 813
54 iso_pu_bacteria 2534681796 2535516935 814
55 iso_pu_bacteria 2582581299 2585228350 814
56 iso_pu_bacteria 2643221599 2644007201 814
57 iso_pu_bacteria 2643221643 2644242412 814
58 iso_pu_bacteria 2791355082 2792579888 814
59 iso_pu_bacteria 3005452660 3005454737 814
60 iso_pu_bacteria 8005542996 8005545745 814
61 iso_pu_bacteria 8005626139 8005628317 814
62 iso_pu_bacteria 2582581304 2585255163 815
63 iso_pu_bacteria 2643221634 2644193576 815
64 3300021388 Ga0213875_10000030 Ga0213875_1000003045 816
65 3300037853 Ga0436364_1121193 Ga0436364_1121193_1077_3689 816
66 3300046690 Ga0495624_0024551 Ga0495624_0024551_428_2956 816
67 3300047317 Ga0495604_0034491 Ga0495604_0034491_1286_3814 816
68 iso_pu_bacteria 2585427594 2585843293 816
69 iso_pu_bacteria 2738541293 2738800150 816
70 3300031616 Ga0307508_10029290 Ga0307508_100292902 817
71 3300003203 JGI25406J46586_10001170 JGI25406J46586_100011708 818
72 3300005985 Ga0081539_10002783 Ga0081539_1000278314 818
73 3300046506 Ga0495583_0004560 Ga0495583_0004560_7148_9664 818
74 iso_pu_bacteria 8049293176 8049298294 818
75 3300037853 Ga0436364_1271329 Ga0436364_1271329_5518_8418 819
76 iso_pu_bacteria 2643221558 2643813369 820
77 3300028794 Ga0307515_10001651 Ga0307515_1000165111 821
78 iso_pu_bacteria 641228493 641334132 821
79 iso_pu_bacteria 643348555 643391766 821
80 3300049581 Ga0501047_0051904 Ga0501047_0051904_1110_3653 822
81 iso_pu_bacteria 2898795034 2898795487 822
82 3300003187 JGI25151J46595_10010950 JGI25151J46595_100109503 823
83 3300005548 Ga0070665_100013380 Ga0070665_1000133803 823
84 3300053107 Ga0500560_000830 Ga0500560_000830_1695_4187 823
85 iso_pu_bacteria 2919679072 2919680347 823
86 3300025294 Ga0209025_1000148 Ga0209025_100014810 824
87 3300048925 Ga0496122_0000032 Ga0496122_0000032_221722_224280 824
88 3300048926 Ga0496123_0000093 Ga0496123_0000093_21401_23959 824
89 3300048928 Ga0496125_0000041 Ga0496125_0000041_268976_271534 824
90 3300049571 Ga0501034_0005760 Ga0501034_0005760_3917_6454 825
91 iso_pu_bacteria 2643221637 2644207917 825
92 iso_pu_bacteria 2643221718 2644651192 825
93 iso_pu_bacteria 2839993093 2839998056 825
94 3300039447 Ga0436361_0891000 Ga0436361_0891000_6995_9556 826
95 iso_pu_bacteria 2765235802 2765467292 827
96 iso_pu_bacteria 2854911287 2854915648 827
97 iso_pu_bacteria 2904578770 2904580330 827
98 iso_pu_bacteria 2919119836 2919119994 827
99 3300037418 Ga0395900_0021858 Ga0395900_0021858_2304_4862 828
100 3300038443 Ga0395901_0087923 Ga0395901_0087923_592_3150 828
101 iso_pu_bacteria 2894652903 2894654041 828
102 3300027312 Ga0209371_1001722 Ga0209371_100172212 829
103 3300030500 Ga0268256_1000785 Ga0268256_10007858 829
104 3300049571 Ga0501034_0002441 Ga0501034_0002441_10550_13081 829
105 iso_pu_bacteria 2508501127 2509143640 829
106 iso_pu_bacteria 2523231067 2523469105 829
107 iso_pu_bacteria 2597489875 2597816210 829
108 iso_pu_bacteria 2738543031 2739347430 829
109 iso_pu_bacteria 2775506902 2776269928 829
110 iso_pu_bacteria 2775506904 2776281045 829
111 iso_pu_bacteria 2791355091 2792619390 829
112 iso_pu_bacteria 2791355092 2792627163 829
113 iso_pu_bacteria 2791355094 2792643328 829
114 iso_pu_bacteria 2834578030 2834581093 829
115 iso_pu_bacteria 2841734538 2841734695 829
116 iso_pu_bacteria 2848992105 2848996875 829
117 iso_pu_bacteria 2856342000 2856347990 829
118 iso_pu_bacteria 2871474448 2871476382 829
119 iso_pu_bacteria 2874123672 2874124732 829
120 iso_pu_bacteria 2888343758 2888348682 829
121 iso_pu_bacteria 2920822456 2920827325 829
122 iso_pu_bacteria 2937836603 2937842831 829
123 iso_pu_bacteria 2958071322 2958074865 829
124 iso_pu_bacteria 2970524798 2970529502 829
125 iso_pu_bacteria 2970540015 2970546045 829
126 iso_pu_bacteria 3002141150 3002145858 829
127 iso_pu_bacteria 643692032 643822338 829
128 iso_pu_bacteria 8004633249 8004637592 829
129 iso_pu_bacteria 8055617313 8055622949 829
130 iso_pu_bacteria 8056875544 8056876301 829
131 3300003323 rootH1_10003005 rootH1_100030052 830
132 iso_pu_bacteria 2513237087 2513593000 830
133 iso_pu_bacteria 2828305725 2828306730 830
134 iso_pu_bacteria 2891373044 2891375890 830
135 iso_pu_bacteria 2989349275 2989353489 830
136 3300046460 Ga0495638_0013123 Ga0495638_0013123_784_3351 831
137 3300048920 Ga0496117_0001756 Ga0496117_0001756_8904_11462 831
138 3300049579 Ga0501043_0037523 Ga0501043_0037523_193_2730 831
139 iso_pu_bacteria 2511231027 2511392393 831
140 iso_pu_bacteria 2767802442 2770198079 831
141 iso_pu_bacteria 2842871566 2842874757 831
142 iso_pu_bacteria 2928521798 2928523081 831
143 iso_pu_bacteria 2954011201 2954013554 831
144 iso_pu_bacteria 2989771324 2989774209 831
145 3300049571 Ga0501034_0087784 Ga0501034_0087784_279_2819 832
146 3300049574 Ga0501038_0022142 Ga0501038_0022142_1252_3792 832
147 iso_pu_bacteria 2757320392 2757571159 832
148 iso_pu_bacteria 2840764183 2840765667 832
149 3300053088 Ga0500644_0001730 Ga0500644_0001730_1301_3868 833
150 3300053156 Ga0500622_0001964 Ga0500622_0001964_9700_12267 833
151 iso_pu_bacteria 8005484373 8005489676 833
152 3300025942 Ga0207689_10028125 Ga0207689_100281255 834
153 iso_pu_bacteria 2582581315 2585328693 834
154 3300005434 Ga0070709_10020665 Ga0070709_100206651 835
155 3300037418 Ga0395900_0050316 Ga0395900_0050316_788_3346 835
156 3300044842 Ga0466957_0002160 Ga0466957_0002160_3354_5918 835
157 3300048925 Ga0496122_0007950 Ga0496122_0007950_166_2742 835
158 3300048926 Ga0496123_0006442 Ga0496123_0006442_6849_9425 835
159 iso_pu_bacteria 2582581316 2585333658 835
160 iso_pu_bacteria 2667528174 2671116606 835
161 iso_pu_bacteria 2818991448 2819607873 835
162 iso_pu_bacteria 2838029111 2838035262 835
163 iso_pu_bacteria 2842475841 2842482023 835
164 iso_pu_bacteria 2842502639 2842507947 835
165 iso_pu_bacteria 2919408235 2919413816 835
166 iso_pu_bacteria 3005416602 3005421239 835
167 iso_pu_bacteria 8005314921 8005319026 835
168 iso_pu_bacteria 8005645114 8005650554 835
169 iso_pu_bacteria 8005682033 8005683427 835
170 3300053125 Ga0500618_000778 Ga0500618_000778_4703_7255 836
171 iso_pu_bacteria 2939669807 2939672506 837
172 3300001979 JGI24740J21852_10000123 JGI24740J21852_1000012322 839
173 3300002704 JGI25155J39150_1000027 JGI25155J39150_100002724 839
174 3300002705 JGI25156J39149_1000008 JGI25156J39149_1000008100 839
175 3300002737 JGI25162J39368_1000196 JGI25162J39368_100019631 839
176 3300002738 JGI25154J39366_1000050 JGI25154J39366_100005024 839
177 3300002741 JGI25157J39369_1000028 JGI25157J39369_1000028102 839
178 3300003214 JGI25165J46597_1000292 JGI25165J46597_100029231 839
179 3300003316 rootH1_10053106 rootH1_100531061 839
180 3300025206 Ga0209435_100020 Ga0209435_10002097 839
181 3300025233 Ga0209437_100312 Ga0209437_10031236 839
182 3300025246 Ga0209646_1000070 Ga0209646_100007097 839
183 3300025250 Ga0209026_1000057 Ga0209026_1000057125 839
184 3300025256 Ga0209759_1000047 Ga0209759_1000047125 839
185 3300025261 Ga0209233_1000230 Ga0209233_100023032 839
186 3300026078 Ga0207702_10063946 Ga0207702_100639462 839
187 3300048928 Ga0496125_0035369 Ga0496125_0035369_568_3144 839

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04679

DNA_ligase_A_C

ATP dependent DNA ligase C terminal region

494

589

0.98

PF13298

LigD_N

DNA polymerase Ligase (LigD)

40

145

0.98

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

637

890

0.97

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

291

476

0.9

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pLDDT pTM Quality
84.21 0.45 Low
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Predicted Structure (AlphaFold2)

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