F288525

General Info

Members Datasets Scaffolds Average Seq Length
187 151 169 847

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2857542790|2857543750
Length 969
Sequence LQQYREKRNFGITSEPAEGGTANDDARAFVIQKHWASRLHYDLRLELDGAMKSWAVPKGPSYDVADKRMAVQVEDHPIAYNQFEGEIPKGQYGAGRVIIWDEGVWVPLEDPVEGYRRGMLKFELHGVKMRGKWALIRMKGKGEKQPPWLLIKEKDAFVKPAAEFSVVDEMPDSVVPLRAEVKKARAQQAKAATAAKTAPTAKATTAKGATAKGAIAKGASAAEAKASAASDAPKASGTKAATATSKRAKAAVKKALDGDPDASTAVAEDTAGRLPGEAAPLPDLLKPQLATLVDAPPPNPKDWLFEVKFDGYRIGARLDGKRVQLFTRNGHDWTHKLQHLADALATMKTGKAWLDGEIVVLGDNGAPSFQALQNAFDSSKTGNIAYYVFDAPFLAGRDLRGETLMTRRALLEQIFDDHSPDLVRFSGAFDVRPQDLVTSACKMGLEGVIGKLRDSTYVSRRSPAWIKLKCGQRQEFVVVGYTQPKGTRVGLGALLIAVHDDDGALRFAGSVGSGFDDRGLTEIKQKLDAIAVDKSPFSARTPVDRTAQWVKPQLLAEVSFSEWTSSGSIRHPVFKGLRSDKPAKAIGREKPVPAKEVVAKLNAATPDDSESTMKKTSATTTAKKNAKKATTGKATAEKATAKKAPVKKSTAKKATAKKATAAPATVANATASPAKTATKKSSAKLTHPERVIDSSTGLTKLDLAEYYARVSPLLLPHLKARPVSLVRAPGGIEKELFFQKHLEAPMPGVKPLDPKLDPDHPPLLEVPTAQALMSAVQMNTVEFHTWNAVKTAIDKPDRMTFDLDPGDGIKWPAMVQAAQLVRVMLTEIGLTSWIKTSGGKGLHVVVPLKKQYGWDTVKSFSQAIVQHLARTLPKLFVAKSGPKNRVGKIFVDYLRNGFGATTASAWSARARPGMGVSVPIEWDEVEGISSGGHWTIANIDDRLDIGNHPWDDYAPQSVTGAMSTLDFKP

Samples

Sample ID Description Type Environment
1 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
2 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
3 2596583598 Ralstonia sp. UNCCL144 Isolate Unclassified
4 2599185178 Ralstonia sp. NFACC01 Isolate Rhizoplane
5 2599185292 Achromobacter sp. NFACC18-2 Isolate Rhizoplane
6 2643221569 Achromobacter sp. Root565 Isolate Unclassified
7 2643221594 Achromobacter sp. Root170 Isolate Unclassified
8 2808606395 Achromobacter sp. SLBN-14 Isolate Unclassified
9 2855730933 Achromobacter sp. HZ28 Isolate Nodule
10 2855767633 Achromobacter sp. HZ34 Isolate Nodule
11 2857542790 Achromobacter sp. R-72367 Isolate Unclassified
12 2881927736 Candidimonas sp. SYP-B2681 Isolate Rhizosphere
13 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
14 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
15 2900577576 Ralstonia sp. TCR112 Isolate Rhizosphere
16 2928058823 Ralstonia sp. 1138 Isolate Unclassified
17 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
18 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
19 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
20 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
21 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
22 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
23 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
24 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
25 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
26 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
27 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
28 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
29 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
30 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
31 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
32 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
33 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
34 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
35 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
36 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
37 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
38 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
39 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
40 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
41 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
42 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
43 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
44 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
45 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
46 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
47 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
48 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
52 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
53 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
60 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
61 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
65 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
70 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
72 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
74 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
78 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
96 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
97 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
98 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
99 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
100 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
101 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
102 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
103 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
104 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
105 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
106 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
107 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
108 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
109 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
110 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
111 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
112 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
113 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
114 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
115 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
116 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
117 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
118 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
119 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
120 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
121 3300044650 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4E Metagenome Unclassified
122 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
123 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
124 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
125 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
126 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
127 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
128 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
129 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
130 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
131 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
142 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
149 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
150 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
151 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.77
Metatranscriptomes 1.6
Isolates 9.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.32
Nodule 2.67
Rhizoplane 1.07
Rhizosphere 66.84
Stem 0
Stem Tuber 0
Unclassified 9.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1000246 3300001915 Bacteria 16140
2 JGI25151J46595_10000305 3300003187 Bacteria 53754
3 rootL2_10090001 3300003322 Bacteria 4321
4 Ga0055539_1000209 3300003752 Bacteria 45343
5 Ga0055539_1000220 3300003752 Bacteria 40561
6 Ga0055533_1000048 3300003756 Bacteria 212106
7 Ga0055532_1000006 3300003758 Bacteria 451244
8 Ga0055525_1000552 3300003759 Bacteria 17248
9 Ga0055535_1000004 3300003761 Bacteria 451244
10 Ga0055529_1000022 3300003763 Bacteria 320108
11 Ga0055529_1000068 3300003763 Bacteria 163911
12 Ga0055534_1001046 3300003784 Bacteria 12089
13 Ga0055531_10000494 3300003794 Bacteria 36120
14 Ga0070670_100045619 3300005331 Bacteria 3768
15 Ga0068869_100004782 3300005334 Bacteria 8454
16 Ga0070680_100059635 3300005336 Bacteria 3123
17 Ga0070661_100000123 3300005344 Bacteria 63559
18 Ga0070675_100011693 3300005354 Bacteria 6880
19 Ga0070674_100012566 3300005356 Bacteria 5203
20 Ga0070674_100028860 3300005356 Bacteria 3647
21 Ga0070673_100013238 3300005364 Bacteria 5696
22 Ga0070659_100000474 3300005366 Bacteria 29585
23 Ga0070714_100023996 3300005435 Bacteria 5016
24 Ga0070663_100000020 3300005455 Bacteria 112469
25 Ga0070678_100026811 3300005456 Bacteria 3902
26 Ga0070699_100024309 3300005518 Bacteria 5220
27 Ga0070672_100003483 3300005543 Bacteria 10195
28 Ga0070695_100020418 3300005545 Bacteria 4045
29 Ga0068855_100016502 3300005563 Bacteria 8881
30 Ga0068855_100023524 3300005563 Bacteria 7377
31 Ga0070664_100000003 3300005564 Bacteria 325604
32 Ga0068857_100009236 3300005577 Bacteria 8554
33 Ga0068854_100000100 3300005578 Bacteria 60250
34 Ga0068856_100000011 3300005614 Bacteria 170419
35 Ga0081455_10003450 3300005937 Bacteria 18173
36 Ga0105240_10002253 3300009093 Bacteria 31317
37 Ga0105238_10017863 3300009551 Bacteria 7211
38 Ga0105239_10006350 3300010375 Bacteria 13742
39 Ga0157373_10006216 3300013100 Bacteria 8923
40 Ga0157371_10000083 3300013102 Bacteria 149633
41 Ga0157370_10000302 3300013104 Bacteria 62696
42 Ga0157370_10047420 3300013104 Bacteria 4119
43 Ga0157369_10018176 3300013105 Bacteria 7886
44 Ga0157372_10000609 3300013307 Bacteria 39083
45 Ga0163163_10063727 3300014325 Bacteria 3656
46 Ga0157380_10052486 3300014326 Bacteria 3229
47 Ga0182006_1000657 3300015261 Bacteria 24440
48 Ga0182006_1002856 3300015261 Bacteria 9186
49 Ga0197907_10909745 3300020069 Bacteria 6722
50 Ga0206351_10282236 3300020077 Bacteria 7070
51 Ga0154015_1096764 3300020610 Bacteria 26201
52 Ga0209784_100195 3300025224 Bacteria 46751
53 Ga0209566_100002 3300025225 Bacteria 2614868
54 Ga0209674_100010 3300025226 Bacteria 1038638
55 Ga0209674_100024 3300025226 Bacteria 535481
56 Ga0209674_100050 3300025226 Bacteria 341738
57 Ga0209672_100123 3300025228 Bacteria 81654
58 Ga0209672_100313 3300025228 Bacteria 32379
59 Ga0209147_100015 3300025229 Bacteria 565073
60 Ga0209563_100004 3300025230 Bacteria 1814108
61 Ga0209563_100026 3300025230 Bacteria 559453
62 Ga0209563_100121 3300025230 Bacteria 130625
63 Ga0209258_100021 3300025242 Bacteria 565073
64 Ga0209258_100442 3300025242 Bacteria 46898
65 Ga0209677_100013 3300025253 Bacteria 548200
66 Ga0209677_100153 3300025253 Bacteria 63258
67 Ga0209677_102607 3300025253 Bacteria 6583
68 Ga0209759_1001379 3300025256 Bacteria 13991
69 Ga0209759_1002849 3300025256 Bacteria 7290
70 Ga0209455_1000026 3300025272 Bacteria 653778
71 Ga0209455_1000028 3300025272 Bacteria 565073
72 Ga0209130_1001962 3300025284 Bacteria 11355
73 Ga0209675_1004150 3300025291 Bacteria 6576
74 Ga0209676_1007042 3300025292 Bacteria 5394
75 Ga0209025_1000018 3300025294 Bacteria 686898
76 Ga0209050_1006907 3300025298 Bacteria 6568
77 Ga0209051_1000196 3300025303 Bacteria 107028
78 Ga0209257_1000305 3300025304 Bacteria 107001
79 Ga0207682_10005637 3300025893 Bacteria 5093
80 Ga0207695_10003168 3300025913 Bacteria 23454
81 Ga0207657_10005122 3300025919 Bacteria 13732
82 Ga0207657_10006617 3300025919 Bacteria 11995
83 Ga0207649_10000293 3300025920 Bacteria 38833
84 Ga0207694_10036731 3300025924 Bacteria 3760
85 Ga0207659_10015215 3300025926 Bacteria 4980
86 Ga0207691_10004962 3300025940 Bacteria 12840
87 Ga0207691_10009287 3300025940 Bacteria 9435
88 Ga0207679_10000083 3300025945 Bacteria 83025
89 Ga0207667_10001216 3300025949 Bacteria 32239
90 Ga0207651_10008857 3300025960 Bacteria 5464
91 Ga0207640_10000111 3300025981 Bacteria 61830
92 Ga0207678_10000030 3300026067 Bacteria 112455
93 Ga0207702_10000054 3300026078 Bacteria 137192
94 Ga0207675_100040689 3300026118 Bacteria 4341
95 Ga0207683_10035428 3300026121 Bacteria 4341
96 Ga0265336_10000011 3300028666 Bacteria 275816
97 Ga0265324_10003418 3300029957 Bacteria 7578
98 Ga0307513_10020868 3300031456 Bacteria 7752
99 Ga0307513_10046891 3300031456 Bacteria 4706
100 Ga0307513_10068231 3300031456 Bacteria 3726
101 Ga0265314_10004465 3300031711 Bacteria 12973
102 Ga0307413_10016708 3300031824 Bacteria 3800
103 Ga0307410_10019833 3300031852 Bacteria 4099
104 Ga0307407_10015124 3300031903 Bacteria 3802
105 Ga0307412_10003859 3300031911 Bacteria 8334
106 Ga0307412_10025779 3300031911 Bacteria 3645
107 Ga0307409_100005181 3300031995 Bacteria 7454
108 Ga0373931_0000849 3300035691 Bacteria 12858
109 Ga0395899_0012320 3300037312 Bacteria 6551
110 Ga0395900_0002002 3300037418 Bacteria 23000
111 Ga0395898_0009206 3300037466 Bacteria 10393
112 Ga0395898_0016477 3300037466 Bacteria 7559
113 Ga0395898_0043992 3300037466 Bacteria 4398
114 Ga0395905_0001600 3300037471 Bacteria 26922
115 Ga0395905_0010741 3300037471 Bacteria 8877
116 Ga0395905_0065214 3300037471 Bacteria 3409
117 Ga0395901_0030881 3300038443 Bacteria 5521
118 Ga0395901_0039628 3300038443 Bacteria 4876
119 Ga0436361_1159348 3300039447 Bacteria 5141
120 Ga0439436_0002102 3300041404 Bacteria 5949
121 Ga0439461_0001163 3300041410 Bacteria 4008
122 Ga0439465_0004470 3300041413 Bacteria 4522
123 Ga0439431_0005580 3300041997 Bacteria 2775
124 Ga0439442_002213 3300042002 Bacteria 3829
125 Ga0439432_005665 3300042006 Bacteria 4492
126 Ga0439449_0001393 3300042007 Bacteria 9446
127 Ga0439449_0003954 3300042007 Bacteria 5736
128 Ga0439449_0003990 3300042007 Bacteria 5706
129 Ga0439452_004738 3300042010 Bacteria 4501
130 Ga0439457_004678 3300042014 Bacteria 3538
131 Ga0450899_001340 3300042135 Bacteria 2767
132 Ga0466986_0015074 3300044650 Bacteria 4934
133 Ga0466969_0006296 3300044656 Bacteria 6313
134 Ga0495585_0015038 3300046492 Bacteria 4499
135 Ga0495583_0000090 3300046506 Bacteria 158988
136 Ga0495606_0002085 3300046507 Bacteria 24403
137 Ga0495642_0004075 3300046528 Bacteria 5701
138 Ga0495625_0019650 3300046660 Bacteria 5232
139 Ga0495649_0000203 3300046694 Bacteria 52758
140 Ga0495589_0002895 3300046794 Bacteria 9494
141 Ga0495686_0000462 3300047472 Bacteria 61070
142 Ga0496121_0016011 3300048924 Bacteria 7775
143 Ga0496121_0048855 3300048924 Bacteria 3595
144 Ga0496124_0000007 3300048927 Bacteria 883534
145 Ga0496125_0002133 3300048928 Bacteria 26565
146 Ga0501032_0005072 3300049569 Bacteria 9836
147 Ga0501032_0009921 3300049569 Bacteria 6876
148 Ga0501033_0002795 3300049570 Bacteria 14619
149 Ga0501033_0014761 3300049570 Bacteria 5931
150 Ga0501034_0016840 3300049571 Bacteria 7494
151 Ga0501036_0067601 3300049572 Bacteria 3023
152 Ga0501037_0010740 3300049573 Bacteria 6728
153 Ga0501038_0001557 3300049574 Bacteria 21202
154 Ga0501038_0109894 3300049574 Bacteria 2284
155 Ga0501039_0069606 3300049575 Bacteria 2733
156 Ga0501042_0000976 3300049578 Bacteria 16174
157 Ga0501043_0013888 3300049579 Bacteria 6301
158 Ga0501043_0037786 3300049579 Bacteria 3797
159 Ga0501043_0039761 3300049579 Bacteria 3697
160 Ga0501046_0006526 3300049580 Bacteria 10317
161 Ga0501047_0061069 3300049581 Bacteria 3637
162 Ga0501048_0008970 3300049582 Bacteria 7529
163 Ga0501035_0000426 3300049822 Bacteria 47492
164 Ga0501035_0044376 3300049822 Bacteria 4003
165 Ga0501044_0002096 3300049823 Bacteria 22950
166 Ga0501044_0005736 3300049823 Bacteria 13751
167 Ga0501045_0005639 3300049824 Bacteria 8664
168 nmdc:mga07m45_1704_c2 3300050496 Bacteria 3260
169 Ga0500610_0003739 3300053079 Bacteria 5905

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049574 Ga0501038_0109894 Ga0501038_0109894_11_2083 683
2 3300042135 Ga0450899_001340 Ga0450899_001340_41_2263 711
3 3300005518 Ga0070699_100024309 Ga0070699_1000243093 768
4 3300037471 Ga0395905_0065214 Ga0395905_0065214_433_2955 781
5 3300010375 Ga0105239_10006350 Ga0105239_100063502 782
6 3300049575 Ga0501039_0069606 Ga0501039_0069606_327_2696 782
7 3300031711 Ga0265314_10004465 Ga0265314_100044653 785
8 3300005545 Ga0070695_100020418 Ga0070695_1000204183 787
9 3300025292 Ga0209676_1007042 Ga0209676_10070423 787
10 3300025298 Ga0209050_1006907 Ga0209050_10069074 787
11 3300053079 Ga0500610_0003739 Ga0500610_0003739_773_3286 788
12 3300005563 Ga0068855_100016502 Ga0068855_1000165027 790
13 3300025919 Ga0207657_10005122 Ga0207657_100051225 790
14 3300037471 Ga0395905_0001600 Ga0395905_0001600_14972_17554 794
15 3300035691 Ga0373931_0000849 Ga0373931_0000849_4720_7479 796
16 3300046528 Ga0495642_0004075 Ga0495642_0004075_2570_5173 796
17 3300009093 Ga0105240_10002253 Ga0105240_1000225330 797
18 3300031911 Ga0307412_10025779 Ga0307412_100257792 797
19 3300041410 Ga0439461_0001163 Ga0439461_0001163_811_3342 797
20 3300042002 Ga0439442_002213 Ga0439442_002213_434_2968 797
21 3300042006 Ga0439432_005665 Ga0439432_005665_1234_3768 797
22 3300042007 Ga0439449_0003954 Ga0439449_0003954_1787_4321 797
23 3300042014 Ga0439457_004678 Ga0439457_004678_142_2676 797
24 3300005937 Ga0081455_10003450 Ga0081455_100034503 798
25 3300003763 Ga0055529_1000068 Ga0055529_100006835 799
26 3300005334 Ga0068869_100004782 Ga0068869_1000047821 799
27 3300005336 Ga0070680_100059635 Ga0070680_1000596352 799
28 3300025272 Ga0209455_1000026 Ga0209455_1000026477 799
29 3300031911 Ga0307412_10003859 Ga0307412_100038594 799
30 3300005356 Ga0070674_100028860 Ga0070674_1000288602 800
31 3300003794 Ga0055531_10000494 Ga0055531_1000049433 801
32 3300025303 Ga0209051_1000196 Ga0209051_100019651 801
33 3300025304 Ga0209257_1000305 Ga0209257_100030568 801
34 3300037312 Ga0395899_0012320 Ga0395899_0012320_1948_4515 801
35 3300037466 Ga0395898_0009206 Ga0395898_0009206_7763_10330 801
36 3300037471 Ga0395905_0010741 Ga0395905_0010741_5798_8365 801
37 3300038443 Ga0395901_0030881 Ga0395901_0030881_2442_5009 801
38 3300003784 Ga0055534_1001046 Ga0055534_100104611 802
39 3300025284 Ga0209130_1001962 Ga0209130_100196211 802
40 3300025291 Ga0209675_1004150 Ga0209675_10041506 802
41 3300026118 Ga0207675_100040689 Ga0207675_1000406892 802
42 3300031903 Ga0307407_10015124 Ga0307407_100151242 802
43 3300041413 Ga0439465_0004470 Ga0439465_0004470_54_2597 802
44 3300041997 Ga0439431_0005580 Ga0439431_0005580_79_2619 802
45 3300042007 Ga0439449_0001393 Ga0439449_0001393_4138_6681 802
46 3300042010 Ga0439452_004738 Ga0439452_004738_289_2832 802
47 3300025893 Ga0207682_10005637 Ga0207682_100056373 803
48 3300025926 Ga0207659_10015215 Ga0207659_100152152 803
49 3300025940 Ga0207691_10004962 Ga0207691_100049625 803
50 3300039447 Ga0436361_1159348 Ga0436361_1159348_13_2646 803
51 3300041404 Ga0439436_0002102 Ga0439436_0002102_199_2742 803
52 iso_pu_bacteria 2643221569 2643859847 804
53 3300042007 Ga0439449_0003990 Ga0439449_0003990_2702_5227 805
54 3300048924 Ga0496121_0048855 Ga0496121_0048855_670_3333 808
55 3300047472 Ga0495686_0000462 Ga0495686_0000462_13628_16117 809
56 3300050496 nmdc:mga07m45_1704_c2 nmdc:mga07m45_1704_c2_705_3239 809
57 3300014326 Ga0157380_10052486 Ga0157380_100524862 810
58 3300031824 Ga0307413_10016708 Ga0307413_100167082 810
59 3300031852 Ga0307410_10019833 Ga0307410_100198332 810
60 3300031995 Ga0307409_100005181 Ga0307409_1000051814 810
61 3300048927 Ga0496124_0000007 Ga0496124_0000007_56695_59775 811
62 3300037466 Ga0395898_0016477 Ga0395898_0016477_4795_7389 812
63 iso_pu_bacteria 2881927736 2881930218 812
64 3300009551 Ga0105238_10017863 Ga0105238_100178635 813
65 3300025924 Ga0207694_10036731 Ga0207694_100367312 813
66 3300025253 Ga0209677_102607 Ga0209677_1026073 814
67 3300005331 Ga0070670_100045619 Ga0070670_1000456192 815
68 3300014325 Ga0163163_10063727 Ga0163163_100637272 815
69 3300028666 Ga0265336_10000011 Ga0265336_1000001195 815
70 3300029957 Ga0265324_10003418 Ga0265324_100034185 815
71 3300044656 Ga0466969_0006296 Ga0466969_0006296_1950_4511 815
72 3300031456 Ga0307513_10068231 Ga0307513_100682312 816
73 iso_pu_bacteria 2599185292 2599902486 816
74 iso_pu_bacteria 2643221594 2643979140 816
75 iso_pu_bacteria 2808606395 2809036097 816
76 3300025256 Ga0209759_1001379 Ga0209759_10013797 817
77 iso_pu_bacteria 2887375801 2887377815 819
78 3300048924 Ga0496121_0016011 Ga0496121_0016011_1531_4371 821
79 3300049578 Ga0501042_0000976 Ga0501042_0000976_11829_14384 821
80 3300049579 Ga0501043_0037786 Ga0501043_0037786_945_3500 821
81 3300049580 Ga0501046_0006526 Ga0501046_0006526_6143_8698 821
82 3300049582 Ga0501048_0008970 Ga0501048_0008970_219_2774 821
83 3300049822 Ga0501035_0044376 Ga0501035_0044376_1151_3706 821
84 3300005435 Ga0070714_100023996 Ga0070714_1000239962 822
85 3300013104 Ga0157370_10047420 Ga0157370_100474202 822
86 3300025242 Ga0209258_100442 Ga0209258_10044231 823
87 3300025919 Ga0207657_10006617 Ga0207657_100066175 823
88 iso_pu_bacteria 2885192300 2885196564 824
89 3300005354 Ga0070675_100011693 Ga0070675_1000116931 825
90 3300005356 Ga0070674_100012566 Ga0070674_1000125662 825
91 3300005364 Ga0070673_100013238 Ga0070673_1000132383 825
92 3300005456 Ga0070678_100026811 Ga0070678_1000268113 825
93 3300005543 Ga0070672_100003483 Ga0070672_1000034833 825
94 3300025940 Ga0207691_10009287 Ga0207691_100092874 825
95 3300025960 Ga0207651_10008857 Ga0207651_100088573 825
96 3300026121 Ga0207683_10035428 Ga0207683_100354282 825
97 3300003187 JGI25151J46595_10000305 JGI25151J46595_1000030518 826
98 3300025294 Ga0209025_1000018 Ga0209025_100001852 826
99 3300031456 Ga0307513_10020868 Ga0307513_100208683 826
100 3300037466 Ga0395898_0043992 Ga0395898_0043992_1035_3614 827
101 3300038443 Ga0395901_0039628 Ga0395901_0039628_617_3196 827
102 3300046660 Ga0495625_0019650 Ga0495625_0019650_1435_4026 827
103 3300049569 Ga0501032_0005072 Ga0501032_0005072_3138_5684 827
104 3300049569 Ga0501032_0009921 Ga0501032_0009921_896_3451 827
105 3300049570 Ga0501033_0002795 Ga0501033_0002795_10180_12726 827
106 3300049572 Ga0501036_0067601 Ga0501036_0067601_118_2673 827
107 3300049573 Ga0501037_0010740 Ga0501037_0010740_3514_6069 827
108 3300049822 Ga0501035_0000426 Ga0501035_0000426_6588_9134 827
109 3300049823 Ga0501044_0005736 Ga0501044_0005736_3514_6069 827
110 3300049824 Ga0501045_0005639 Ga0501045_0005639_5812_8367 827
111 3300005563 Ga0068855_100023524 Ga0068855_1000235245 828
112 3300025949 Ga0207667_10001216 Ga0207667_1000121621 828
113 3300031456 Ga0307513_10046891 Ga0307513_100468913 828
114 3300003322 rootL2_10090001 rootL2_100900012 829
115 iso_pu_bacteria 2855730933 2855731988 829
116 iso_pu_bacteria 2855767633 2855768695 829
117 3300046506 Ga0495583_0000090 Ga0495583_0000090_43089_45905 830
118 3300046507 Ga0495606_0002085 Ga0495606_0002085_17614_20430 830
119 3300046694 Ga0495649_0000203 Ga0495649_0000203_43704_46520 830
120 3300046794 Ga0495589_0002895 Ga0495589_0002895_4398_7214 830
121 3300049570 Ga0501033_0014761 Ga0501033_0014761_1496_4051 830
122 3300049571 Ga0501034_0016840 Ga0501034_0016840_4450_7005 830
123 3300049574 Ga0501038_0001557 Ga0501038_0001557_603_3158 830
124 3300049579 Ga0501043_0013888 Ga0501043_0013888_2901_5456 830
125 3300049579 Ga0501043_0039761 Ga0501043_0039761_700_3261 830
126 3300049581 Ga0501047_0061069 Ga0501047_0061069_904_3465 830
127 3300049823 Ga0501044_0002096 Ga0501044_0002096_20000_22555 830
128 iso_pu_bacteria 2857542790 2857543750 831
129 iso_pu_bacteria 2928115317 2928120552 834
130 3300044650 Ga0466986_0015074 Ga0466986_0015074_1300_3903 835
131 3300046492 Ga0495585_0015038 Ga0495585_0015038_48_2816 835
132 3300003752 Ga0055539_1000209 Ga0055539_10002093 840
133 3300003756 Ga0055533_1000048 Ga0055533_1000048185 840
134 3300025226 Ga0209674_100024 Ga0209674_100024481 840
135 3300025230 Ga0209563_100121 Ga0209563_1001214 840
136 3300025253 Ga0209677_100153 Ga0209677_1001534 840
137 iso_pu_bacteria 2513237150 2513954764 840
138 iso_pu_bacteria 2513237165 2514043744 840
139 iso_pu_bacteria 644736347 644752128 840
140 3300005366 Ga0070659_100000474 Ga0070659_1000004745 850
141 3300015261 Ga0182006_1002856 Ga0182006_10028566 850
142 iso_pu_bacteria 2596583598 2597030297 854
143 iso_pu_bacteria 2599185178 2599446924 854
144 iso_pu_bacteria 2900577576 2900579250 854
145 iso_pu_bacteria 2928058823 2928061377 854
146 3300001915 JGI24741J21665_1000246 JGI24741J21665_10002464 858
147 3300003752 Ga0055539_1000220 Ga0055539_10002209 858
148 3300003758 Ga0055532_1000006 Ga0055532_100000633 858
149 3300003759 Ga0055525_1000552 Ga0055525_10005529 858
150 3300003761 Ga0055535_1000004 Ga0055535_100000433 858
151 3300003763 Ga0055529_1000022 Ga0055529_1000022288 858
152 3300005344 Ga0070661_100000123 Ga0070661_10000012329 858
153 3300005455 Ga0070663_100000020 Ga0070663_10000002093 858
154 3300005564 Ga0070664_100000003 Ga0070664_100000003290 858
155 3300005577 Ga0068857_100009236 Ga0068857_1000092364 858
156 3300005578 Ga0068854_100000100 Ga0068854_10000010050 858
157 3300005614 Ga0068856_100000011 Ga0068856_10000001136 858
158 3300013100 Ga0157373_10006216 Ga0157373_100062162 858
159 3300013102 Ga0157371_10000083 Ga0157371_1000008335 858
160 3300013104 Ga0157370_10000302 Ga0157370_1000030234 858
161 3300013105 Ga0157369_10018176 Ga0157369_100181766 858
162 3300013307 Ga0157372_10000609 Ga0157372_100006093 858
163 3300015261 Ga0182006_1000657 Ga0182006_100065712 858
164 3300020069 Ga0197907_10909745 Ga0197907_109097456 858
165 3300020077 Ga0206351_10282236 Ga0206351_102822362 858
166 3300020610 Ga0154015_1096764 Ga0154015_10967647 858
167 3300025224 Ga0209784_100195 Ga0209784_10019539 858
168 3300025225 Ga0209566_100002 Ga0209566_1000021038 858
169 3300025226 Ga0209674_100010 Ga0209674_100010100 858
170 3300025226 Ga0209674_100050 Ga0209674_10005035 858
171 3300025228 Ga0209672_100123 Ga0209672_10012347 858
172 3300025228 Ga0209672_100313 Ga0209672_10031318 858
173 3300025229 Ga0209147_100015 Ga0209147_100015510 858
174 3300025230 Ga0209563_100004 Ga0209563_100004449 858
175 3300025230 Ga0209563_100026 Ga0209563_100026300 858
176 3300025242 Ga0209258_100021 Ga0209258_100021510 858
177 3300025253 Ga0209677_100013 Ga0209677_10001372 858
178 3300025256 Ga0209759_1002849 Ga0209759_10028496 858
179 3300025272 Ga0209455_1000028 Ga0209455_1000028510 858
180 3300025913 Ga0207695_10003168 Ga0207695_1000316810 858
181 3300025920 Ga0207649_10000293 Ga0207649_1000029335 858
182 3300025945 Ga0207679_10000083 Ga0207679_100000838 858
183 3300025981 Ga0207640_10000111 Ga0207640_1000011117 858
184 3300026067 Ga0207678_10000030 Ga0207678_1000003093 858
185 3300026078 Ga0207702_10000054 Ga0207702_10000054127 858
186 3300037418 Ga0395900_0002002 Ga0395900_0002002_4330_6933 858
187 3300048928 Ga0496125_0002133 Ga0496125_0002133_1278_3881 858

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13298

LigD_N

DNA polymerase Ligase (LigD)

32

137

0.98

PF04679

DNA_ligase_A_C

ATP dependent DNA ligase C terminal region

487

581

0.97

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

699

950

0.97

PF01896

DNA_primase_S

DNA primase small subunit

801

922

0.95

PF01068

DNA_ligase_A_M

ATP dependent DNA ligase domain

287

469

0.88

Feature Viewer

pLDDT pTM Quality
81.63 0.43 Low
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Predicted Structure (AlphaFold2)

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