F288371

General Info

Members Datasets Scaffolds Average Seq Length
187 133 374 189

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0218863|Ga0501047_0218863_767_1393
Length 208
Sequence MSRSGGSVAGTLAGGPVPSSTESTRRQLSTRQAATVQRLAEAGLDEVREQGYDGLTVRNVARRAGVAPATAYTYFASREHLVTELFWRRLAALPETAVDRRRSASARATATLSDLALLVADEPQLAAACTVAMLATDPDVRLLRDRIGAEMHRRLVLALGEDTDHAVFHALELAIIGALVEAGTGHLSYEDLPALLSEVAELVLGGLH

Samples

Sample ID Description Type Environment
1 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
2 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
19 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
28 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
29 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
30 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
31 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
59 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
60 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
61 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
62 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
67 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
68 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
69 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
72 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
73 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
74 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
75 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
76 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
77 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
78 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
79 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
80 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
81 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
84 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
85 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
86 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
91 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
92 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
93 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
94 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
95 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
96 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
97 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
100 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
103 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
104 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
108 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
109 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
110 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
111 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
112 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
113 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
119 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
120 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
121 2547132424 Nocardia nova SH22a Isolate Unclassified
122 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
123 2643221692 Nocardia sp. Root136 Isolate Unclassified
124 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
125 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
126 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
127 2842134933 Mycolicibacterium obuense SEMIA 442 Isolate Nodule
128 2866552031 Saccharopolyspora rhizosphaerae H219 Isolate Unclassified
129 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
130 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
131 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
132 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
133 2939582691 Mycolicibacterium sp. 624 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.05
Metatranscriptomes 0
Isolates 6.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.63
Nodule 0.53
Rhizoplane 4.81
Rhizosphere 74.87
Stem 0
Stem Tuber 0
Unclassified 1.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501047_0218863 3300049581 Bacteria 1761
2 JGI24744J21845_10001445 3300002077 Bacteria 4724
3 JGI25406J46586_10003123 3300003203 Bacteria 7783
4 Ga0055540_1001405 3300003792 Bacteria 14369
5 Ga0070690_100116611 3300005330 Bacteria 1788
6 Ga0070668_100023009 3300005347 Bacteria 4711
7 Ga0070668_100060090 3300005347 Bacteria 2942
8 Ga0070669_100003187 3300005353 Bacteria 11795
9 Ga0070671_100223202 3300005355 Bacteria 1598
10 Ga0070688_100049738 3300005365 Bacteria 2609
11 Ga0070667_100000868 3300005367 Bacteria 28062
12 Ga0070709_10026390 3300005434 Bacteria 3443
13 Ga0070714_100396145 3300005435 Bacteria 1304
14 Ga0070714_100453597 3300005435 Bacteria 1218
15 Ga0070710_10073843 3300005437 Bacteria 1973
16 Ga0070711_100030821 3300005439 Bacteria 3555
17 Ga0070705_100068704 3300005440 Bacteria 2133
18 Ga0070663_100000704 3300005455 Bacteria 18056
19 Ga0068853_100072661 3300005539 Bacteria 2998
20 Ga0070695_100113663 3300005545 Bacteria 1841
21 Ga0070696_100148471 3300005546 Bacteria 1719
22 Ga0068855_100220007 3300005563 Bacteria 2130
23 Ga0068857_100256834 3300005577 Bacteria 1603
24 Ga0068856_100253236 3300005614 Bacteria 1776
25 Ga0068852_100083171 3300005616 Bacteria 2846
26 Ga0081538_10044205 3300005981 Bacteria 2782
27 Ga0081538_10102861 3300005981 Bacteria 1431
28 Ga0081539_10000179 3300005985 Bacteria 149126
29 Ga0075365_10022031 3300006038 Bacteria 3984
30 Ga0075364_10004944 3300006051 Bacteria 7723
31 Ga0075364_10061849 3300006051 Bacteria 2456
32 Ga0075364_10084720 3300006051 Bacteria 2098
33 Ga0075364_10191751 3300006051 Bacteria 1384
34 Ga0075364_10371296 3300006051 Bacteria 975
35 Ga0070712_100008365 3300006175 Bacteria 6506
36 Ga0075369_10000539 3300006186 Bacteria 11962
37 Ga0075369_10020621 3300006186 Bacteria 2700
38 Ga0075369_10103963 3300006186 Bacteria 1276
39 Ga0068871_100096330 3300006358 Bacteria 2472
40 Ga0068865_100102269 3300006881 Bacteria 2100
41 Ga0105240_10695901 3300009093 Bacteria 1110
42 Ga0111539_10702982 3300009094 Bacteria 1177
43 Ga0105245_10596529 3300009098 Bacteria 1131
44 Ga0105238_10620838 3300009551 Bacteria 1090
45 Ga0105239_10223037 3300010375 Bacteria 2114
46 Ga0105239_10795431 3300010375 Bacteria 1083
47 Ga0157372_10192285 3300013307 Bacteria 2364
48 Ga0157380_10234615 3300014326 Bacteria 1650
49 Ga0157379_10047179 3300014968 Bacteria 3842
50 Ga0163161_10388858 3300017792 Bacteria 1116
51 Ga0213876_10007230 3300021384 Bacteria 6053
52 Ga0207680_10808521 3300025903 Bacteria 672
53 Ga0207699_10020054 3300025906 Bacteria 3576
54 Ga0207699_10186835 3300025906 Bacteria 1396
55 Ga0207695_10560638 3300025913 Bacteria 1024
56 Ga0207693_10021273 3300025915 Bacteria 5155
57 Ga0207694_10287349 3300025924 Bacteria 1352
58 Ga0207694_10441439 3300025924 Bacteria 1086
59 Ga0207644_10939076 3300025931 Bacteria 725
60 Ga0207706_10043257 3300025933 Bacteria 3992
61 Ga0207686_10099594 3300025934 Bacteria 1938
62 Ga0207665_10017038 3300025939 Bacteria 4773
63 Ga0207665_10619217 3300025939 Bacteria 846
64 Ga0207639_10087412 3300026041 Bacteria 2485
65 Ga0207678_10000040 3300026067 Bacteria 100102
66 Ga0207648_10103303 3300026089 Bacteria 2499
67 Ga0207676_10261014 3300026095 Bacteria 1564
68 Ga0207674_10309475 3300026116 Bacteria 1529
69 Ga0207698_10402501 3300026142 Unclassified 1308
70 Ga0268266_10756933 3300028379 Bacteria 938
71 Ga0307515_10176316 3300028794 Bacteria 2106
72 Ga0307513_10172442 3300031456 Bacteria 2039
73 Ga0307408_101094299 3300031548 Bacteria 739
74 Ga0307405_10147913 3300031731 Bacteria 1648
75 Ga0307413_10045003 3300031824 Bacteria 2613
76 Ga0307410_10249915 3300031852 Bacteria 1378
77 Ga0307410_10317508 3300031852 Bacteria 1235
78 Ga0307406_10157146 3300031901 Bacteria 1630
79 Ga0307407_10686278 3300031903 Bacteria 770
80 Ga0307409_100171979 3300031995 Bacteria 1908
81 Ga0307409_100480825 3300031995 Bacteria 1205
82 Ga0307414_10380905 3300032004 Bacteria 1220
83 Ga0373932_0100237 3300035112 Bacteria 941
84 Ga0373931_0012414 3300035691 Bacteria 4127
85 Ga0436365_0601651 3300039437 Bacteria 2744
86 Ga0436365_1473848 3300039437 Bacteria 56626
87 Ga0436363_0933242 3300039450 Bacteria 2781
88 Ga0436363_1036237 3300039450 Bacteria 3339
89 Ga0439461_0003289 3300041410 Bacteria 2652
90 Ga0439466_0003904 3300041411 Bacteria 5752
91 Ga0439466_0008586 3300041411 Bacteria 3849
92 Ga0439465_0008412 3300041413 Bacteria 3257
93 Ga0439465_0010140 3300041413 Bacteria 2961
94 Ga0439465_0036104 3300041413 Bacteria 1586
95 Ga0451793_0148743 3300041452 Bacteria 2357
96 Ga0451795_0335190 3300041456 Bacteria 1164
97 Ga0451853_3319086 3300041512 Bacteria 757
98 Ga0439442_046641 3300042002 Bacteria 913
99 Ga0439445_0001948 3300042004 Bacteria 4560
100 Ga0439445_0009319 3300042004 Bacteria 2312
101 Ga0439445_0020768 3300042004 Bacteria 1646
102 Ga0439434_0010689 3300042435 Bacteria 2707
103 Ga0439459_0128560 3300042438 Bacteria 645
104 Ga0466972_0043822 3300044658 Bacteria 2172
105 Ga0466972_0073364 3300044658 Bacteria 1631
106 Ga0466965_0006161 3300044683 Bacteria 5425
107 Ga0466963_0030995 3300044694 Bacteria 3454
108 Ga0466963_0059073 3300044694 Bacteria 2559
109 Ga0466963_0094244 3300044694 Bacteria 2042
110 Ga0466964_0023382 3300044706 Bacteria 2403
111 Ga0466964_0135412 3300044706 Bacteria 1126
112 Ga0466964_0214406 3300044706 Bacteria 932
113 Ga0466968_0056423 3300044735 Bacteria 1687
114 Ga0466968_0366498 3300044735 Bacteria 702
115 Ga0466970_0060807 3300044765 Bacteria 2023
116 Ga0466970_0149093 3300044765 Bacteria 1291
117 Ga0466957_0184510 3300044842 Unclassified 1364
118 Ga0466957_0237989 3300044842 Bacteria 1207
119 Ga0466959_0066097 3300045049 Bacteria 2623
120 Ga0466958_0020422 3300045836 Bacteria 3862
121 Ga0466958_0035519 3300045836 Bacteria 2978
122 Ga0466958_0211961 3300045836 Bacteria 1234
123 Ga0466967_0057797 3300045976 Bacteria 3426
124 Ga0466967_0144017 3300045976 Bacteria 2222
125 Ga0466967_0150481 3300045976 Bacteria 2175
126 Ga0466967_0321501 3300045976 Bacteria 1492
127 Ga0466967_1274522 3300045976 Unclassified 732
128 Ga0495665_0009892 3300046531 Bacteria 5163
129 Ga0495669_0059500 3300046684 Bacteria 1726
130 Ga0495581_0249759 3300047315 Bacteria 1037
131 Ga0495672_0200604 3300047320 Bacteria 998
132 Ga0495686_0001785 3300047472 Bacteria 21885
133 Ga0496100_0026114 3300048903 Bacteria 3578
134 Ga0496102_0109895 3300048905 Bacteria 2569
135 Ga0496102_0393465 3300048905 Bacteria 1303
136 Ga0496106_0008670 3300048909 Bacteria 7525
137 Ga0496107_0021696 3300048910 Bacteria 4538
138 Ga0496110_1371970 3300048913 Bacteria 616
139 Ga0496114_0392322 3300048917 Bacteria 1229
140 Ga0496125_0010602 3300048928 Bacteria 9309
141 Ga0501032_0009160 3300049569 Bacteria 7183
142 Ga0501032_0127898 3300049569 Bacteria 1677
143 Ga0501032_0280381 3300049569 Bacteria 1079
144 Ga0501034_0000543 3300049571 Bacteria 60025
145 Ga0501034_0043038 3300049571 Bacteria 4571
146 Ga0501034_0693484 3300049571 Bacteria 917
147 Ga0501043_0006415 3300049579 Bacteria 9450
148 Ga0501047_0516694 3300049581 Bacteria 1020
149 Ga0501068_0449237 3300049584 Bacteria 834
150 Ga0501069_0000421 3300049585 Bacteria 19237
151 Ga0501070_0007196 3300049586 Bacteria 9448
152 Ga0501070_0022037 3300049586 Bacteria 5336
153 Ga0501070_0033693 3300049586 Bacteria 4286
154 Ga0501070_0513773 3300049586 Bacteria 961
155 Ga0501073_0116404 3300049589 Bacteria 1852
156 Ga0501073_0280614 3300049589 Bacteria 1149
157 Ga0501074_0000592 3300049590 Bacteria 22500
158 Ga0501079_0000088 3300049741 Bacteria 44435
159 Ga0501080_0001946 3300049742 Bacteria 17833
160 Ga0501080_0005739 3300049742 Bacteria 11103
161 Ga0501080_0100089 3300049742 Bacteria 2689
162 Ga0501035_0283657 3300049822 Bacteria 1399
163 Ga0501044_0013815 3300049823 Bacteria 8725
164 Ga0501044_0203055 3300049823 Bacteria 1939
165 nmdc:mga00v17_173892_c1 3300050491 Bacteria 1389
166 nmdc:mga00v17_317616_c1 3300050491 Bacteria 1012
167 nmdc:mga00v17_3378_c1 3300050491 Bacteria 8237
168 nmdc:mga00v17_41608_c1 3300050491 Bacteria 2760
169 nmdc:mga00v17_73142_c1 3300050491 Bacteria 2128
170 nmdc:mga08y16_268864_c1 3300050511 Bacteria 1760
171 nmdc:mga0sz30_40862_c1 3300050516 Bacteria 1949
172 nmdc:mga0sz30_94421_c1 3300050516 Bacteria 1303
173 Ga0500559_0208807 3300053136 Bacteria 921
174 Ga0466962_0005768 3300061719 Bacteria 5949
175 2548692599 2547132424 Bacteria 8348532
176 2644488246 2643221687 Bacteria 6500351
177 2644517726 2643221692 Bacteria 7282860
178 2644640047 2643221715 Bacteria 6671032
179 2738886803 2738541308 Bacteria 7020677
180 2739204537 2738543005 Bacteria 5278128
181 2842136086 2842134933 Bacteria 5847019
182 2866557178 2866552031 Bacteria 5824618
183 2902811548 2902810491 Bacteria 6794147
184 2919718172 2919713450 Bacteria 7431245
185 2928145370 2928142448 Bacteria 5288925
186 2929218531 2929212328 Bacteria 7708288
187 2939583084 2939582691 Bacteria 7088898
188 Ga0501047_0218863
189 JGI24744J21845_10001445
190 JGI25406J46586_10003123
191 Ga0055540_1001405
192 Ga0070690_100116611
193 Ga0070668_100023009
194 Ga0070668_100060090
195 Ga0070669_100003187
196 Ga0070671_100223202
197 Ga0070688_100049738
198 Ga0070667_100000868
199 Ga0070709_10026390
200 Ga0070714_100396145
201 Ga0070714_100453597
202 Ga0070710_10073843
203 Ga0070711_100030821
204 Ga0070705_100068704
205 Ga0070663_100000704
206 Ga0068853_100072661
207 Ga0070695_100113663
208 Ga0070696_100148471
209 Ga0068855_100220007
210 Ga0068857_100256834
211 Ga0068856_100253236
212 Ga0068852_100083171
213 Ga0081538_10044205
214 Ga0081538_10102861
215 Ga0081539_10000179
216 Ga0075365_10022031
217 Ga0075364_10004944
218 Ga0075364_10061849
219 Ga0075364_10084720
220 Ga0075364_10191751
221 Ga0075364_10371296
222 Ga0070712_100008365
223 Ga0075369_10000539
224 Ga0075369_10020621
225 Ga0075369_10103963
226 Ga0068871_100096330
227 Ga0068865_100102269
228 Ga0105240_10695901
229 Ga0111539_10702982
230 Ga0105245_10596529
231 Ga0105238_10620838
232 Ga0105239_10223037
233 Ga0105239_10795431
234 Ga0157372_10192285
235 Ga0157380_10234615
236 Ga0157379_10047179
237 Ga0163161_10388858
238 Ga0213876_10007230
239 Ga0207680_10808521
240 Ga0207699_10020054
241 Ga0207699_10186835
242 Ga0207695_10560638
243 Ga0207693_10021273
244 Ga0207694_10287349
245 Ga0207694_10441439
246 Ga0207644_10939076
247 Ga0207706_10043257
248 Ga0207686_10099594
249 Ga0207665_10017038
250 Ga0207665_10619217
251 Ga0207639_10087412
252 Ga0207678_10000040
253 Ga0207648_10103303
254 Ga0207676_10261014
255 Ga0207674_10309475
256 Ga0207698_10402501
257 Ga0268266_10756933
258 Ga0307515_10176316
259 Ga0307513_10172442
260 Ga0307408_101094299
261 Ga0307405_10147913
262 Ga0307413_10045003
263 Ga0307410_10249915
264 Ga0307410_10317508
265 Ga0307406_10157146
266 Ga0307407_10686278
267 Ga0307409_100171979
268 Ga0307409_100480825
269 Ga0307414_10380905
270 Ga0373932_0100237
271 Ga0373931_0012414
272 Ga0436365_0601651
273 Ga0436365_1473848
274 Ga0436363_0933242
275 Ga0436363_1036237
276 Ga0439461_0003289
277 Ga0439466_0003904
278 Ga0439466_0008586
279 Ga0439465_0008412
280 Ga0439465_0010140
281 Ga0439465_0036104
282 Ga0451793_0148743
283 Ga0451795_0335190
284 Ga0451853_3319086
285 Ga0439442_046641
286 Ga0439445_0001948
287 Ga0439445_0009319
288 Ga0439445_0020768
289 Ga0439434_0010689
290 Ga0439459_0128560
291 Ga0466972_0043822
292 Ga0466972_0073364
293 Ga0466965_0006161
294 Ga0466963_0030995
295 Ga0466963_0059073
296 Ga0466963_0094244
297 Ga0466964_0023382
298 Ga0466964_0135412
299 Ga0466964_0214406
300 Ga0466968_0056423
301 Ga0466968_0366498
302 Ga0466970_0060807
303 Ga0466970_0149093
304 Ga0466957_0184510
305 Ga0466957_0237989
306 Ga0466959_0066097
307 Ga0466958_0020422
308 Ga0466958_0035519
309 Ga0466958_0211961
310 Ga0466967_0057797
311 Ga0466967_0144017
312 Ga0466967_0150481
313 Ga0466967_0321501
314 Ga0466967_1274522
315 Ga0495665_0009892
316 Ga0495669_0059500
317 Ga0495581_0249759
318 Ga0495672_0200604
319 Ga0495686_0001785
320 Ga0496100_0026114
321 Ga0496102_0109895
322 Ga0496102_0393465
323 Ga0496106_0008670
324 Ga0496107_0021696
325 Ga0496110_1371970
326 Ga0496114_0392322
327 Ga0496125_0010602
328 Ga0501032_0009160
329 Ga0501032_0127898
330 Ga0501032_0280381
331 Ga0501034_0000543
332 Ga0501034_0043038
333 Ga0501034_0693484
334 Ga0501043_0006415
335 Ga0501047_0516694
336 Ga0501068_0449237
337 Ga0501069_0000421
338 Ga0501070_0007196
339 Ga0501070_0022037
340 Ga0501070_0033693
341 Ga0501070_0513773
342 Ga0501073_0116404
343 Ga0501073_0280614
344 Ga0501074_0000592
345 Ga0501079_0000088
346 Ga0501080_0001946
347 Ga0501080_0005739
348 Ga0501080_0100089
349 Ga0501035_0283657
350 Ga0501044_0013815
351 Ga0501044_0203055
352 nmdc:mga00v17_173892_c1
353 nmdc:mga00v17_317616_c1
354 nmdc:mga00v17_3378_c1
355 nmdc:mga00v17_41608_c1
356 nmdc:mga00v17_73142_c1
357 nmdc:mga08y16_268864_c1
358 nmdc:mga0sz30_40862_c1
359 nmdc:mga0sz30_94421_c1
360 Ga0500559_0208807
361 Ga0466962_0005768
362 2548692599
363 2644488246
364 2644517726
365 2644640047
366 2738886803
367 2739204537
368 2842136086
369 2866557178
370 2902811548
371 2919718172
372 2928145370
373 2929218531
374 2939583084

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

39

85

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5cxg-assembly2.cif.gz_D crystal structure of mycobacterium tuberculosis kstr in complex with peg 0.8939 26 196
5cxg-assembly1.cif.gz_B crystal structure of mycobacterium tuberculosis kstr in complex with peg 0.8777 23 198
5cxg-assembly2.cif.gz_D crystal structure of mycobacterium tuberculosis kstr in complex with peg 0.8657 26 196
3mnl-assembly1.cif.gz_A the crystal structure of kstr (rv3574) from mycobacterium tuberculosis h37rv 0.8521 23 196
5ua2-assembly1.cif.gz_A-2 mycobacterium tuberculosis kstr in complex with a 26-bp dna operator 0.8497 25 198
ID Description Score Start End Superfamily
2of7A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9521 25 69 1.10.10.60
6azhA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9503 29 75 1.10.10.60
2id3B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9469 25 70 1.10.10.60
5gpaA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9408 29 69 1.10.10.60
3whcC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9401 28 69 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A7I7XWS4-F1-model_v4 TetR family transcriptional regulator 0.989 39 198 GO:0000976
GO:0003700
AF-A0A7I7XWS4-F1-model_v4 TetR family transcriptional regulator 0.9769 39 198 GO:0000976
GO:0003700
AF-L0J0U0-F1-model_v4 Transcriptional regulator, tetR family 0.9586 27 196 GO:0003677
GO:0006355
AF-A0A5C5S5D6-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9495 18 196 GO:0000976
GO:0003700
AF-A0A1A3Q0D4-F1-model_v4 TetR family transcriptional regulator 0.9449 23 197 GO:0000976
GO:0003700

Map