F287680

General Info

Members Datasets Scaffolds Average Seq Length
187 133 374 386

Family's Representative Sequence

Representative Sequence 3300013308|Ga0157375_10176526|Ga0157375_101765262
Length 443
Sequence MIHVLGDDEGNGVHNEETKLTETNEDIYCFQKNNIFFVRLRFLRSFVVNSVHFVTSDGRSANPMRTSTILSILLLSLAVSPNRSPDIAFRSLMIDGGASETAAVADVNKDGKLDIISGENWYEGPSWTKHKFRELNFTNNYYDNFSDLPVDVDGDGYPDLVRVTWFAKKISWWKNPGRAAASAWQEADIHTGFNIEFAVLADMDNDGKANEVVAQENGTPQAWYEVKNGVWVSHEVSDKSYGHGIGAGDVNGDKRTDILTPRGWLEAPADPRAGNWTFHADWEAINVPLPVSGQPAGAAPKLLELGFMHVLDVNGDGRNDVIAGAGHNYGLFWFEQGKDGQFTRRTIDASWSQAHASTRFMAHNGSDPGEKEPLGVYWYEYAAASGPASPSASAGQAATGEWIKHVIDYGGRMGGGMQIPVIDIVCAGKSGLFIVENLTKGKR

Samples

Sample ID Description Type Environment
1 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
17 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
18 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
19 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
20 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
21 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
22 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
56 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
58 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
59 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
60 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
61 3300042001 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z081617_5542 Metagenome Rhizosphere
62 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
63 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
64 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
65 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
66 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
67 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
68 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
69 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
70 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
71 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
74 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
75 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
76 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
77 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
78 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
79 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
80 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
81 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
82 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
83 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
84 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
85 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
86 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
89 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
90 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
91 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
100 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
101 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
105 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
106 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
107 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
108 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
109 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
110 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
114 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
115 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
116 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
117 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
118 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
119 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
120 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
121 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
122 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
123 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
124 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
125 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
126 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
127 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
128 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
129 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
130 3300059423 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 8_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
131 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
132 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
133 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.63
Nodule 0
Rhizoplane 3.74
Rhizosphere 86.63
Stem 0
Stem Tuber 0
Unclassified 6.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157375_10176526 3300013308 Unclassified 2286
2 Ga0065712_10075399 3300005290 Bacteria 3871
3 Ga0065715_10089902 3300005293 Bacteria 8182
4 Ga0065715_10091003 3300005293 Bacteria 6225
5 Ga0065715_10098295 3300005293 Bacteria 3568
6 Ga0065715_10115862 3300005293 Bacteria 2400
7 Ga0070683_100064332 3300005329 Bacteria 3414
8 Ga0070670_100069519 3300005331 Bacteria 3022
9 Ga0068869_100037296 3300005334 Bacteria 3455
10 Ga0070680_100064761 3300005336 Unclassified 2996
11 Ga0070661_100027210 3300005344 Bacteria 4116
12 Ga0070669_100001018 3300005353 Bacteria 20415
13 Ga0070671_100092473 3300005355 Unclassified 2534
14 Ga0070674_100006719 3300005356 Bacteria 6732
15 Ga0070667_100007773 3300005367 Bacteria 8888
16 Ga0070678_100067446 3300005456 Bacteria 2663
17 Ga0070678_100117051 3300005456 Bacteria 2095
18 Ga0070681_10056052 3300005458 Bacteria 3923
19 Ga0070684_100001901 3300005535 Bacteria 15296
20 Ga0070664_100010150 3300005564 Bacteria 7637
21 Ga0075365_10033409 3300006038 Bacteria 3315
22 Ga0075368_10009606 3300006042 Bacteria 3482
23 Ga0075368_10073129 3300006042 Bacteria 1387
24 Ga0075364_10054328 3300006051 Bacteria 2619
25 Ga0075362_10001516 3300006177 Bacteria 7476
26 Ga0075367_10019855 3300006178 Bacteria 3733
27 Ga0075367_10050717 3300006178 Bacteria 2451
28 Ga0075367_10086422 3300006178 Bacteria 1903
29 Ga0075366_10014944 3300006195 Bacteria 4439
30 Ga0075366_10021470 3300006195 Bacteria 3753
31 Ga0075366_10070294 3300006195 Bacteria 2085
32 Ga0075428_100000769 3300006844 Bacteria 33377
33 Ga0075428_100037850 3300006844 Bacteria 5308
34 Ga0075430_100007202 3300006846 Bacteria 9384
35 Ga0075430_100262611 3300006846 Bacteria 1430
36 Ga0075431_100029471 3300006847 Bacteria 5650
37 Ga0075431_100066805 3300006847 Unclassified 3713
38 Ga0075431_100202369 3300006847 Bacteria 2031
39 Ga0075431_100273935 3300006847 Bacteria 1710
40 Ga0075433_10058658 3300006852 Bacteria 3367
41 Ga0075433_10251523 3300006852 Bacteria 1568
42 Ga0075434_100000789 3300006871 Bacteria 25020
43 Ga0075429_100038658 3300006880 Bacteria 4154
44 Ga0075436_100025445 3300006914 Bacteria 4074
45 Ga0105240_10165757 3300009093 Bacteria 2621
46 Ga0111539_10044524 3300009094 Bacteria 5317
47 Ga0111539_10053954 3300009094 Bacteria 4785
48 Ga0114129_10000688 3300009147 Bacteria 42747
49 Ga0114129_10004960 3300009147 Bacteria 18763
50 Ga0114129_10007637 3300009147 Bacteria 15387
51 Ga0114129_10031402 3300009147 Bacteria 7508
52 Ga0114129_10057920 3300009147 Bacteria 5421
53 Ga0114129_10140846 3300009147 Bacteria 3306
54 Ga0105248_10000166 3300009177 Bacteria 77193
55 Ga0105248_10284054 3300009177 Bacteria 1863
56 Ga0105249_10009175 3300009553 Bacteria 8648
57 Ga0157370_10085157 3300013104 Bacteria 2969
58 Ga0157378_10461757 3300013297 Bacteria 1262
59 Ga0157375_10082182 3300013308 Bacteria 3263
60 Ga0163163_10111323 3300014325 Unclassified 2767
61 Ga0207697_10001035 3300025315 Bacteria 15459
62 Ga0207697_10038110 3300025315 Unclassified 1971
63 Ga0207688_10004063 3300025901 Bacteria 7976
64 Ga0207705_10041820 3300025909 Bacteria 3288
65 Ga0207695_10125600 3300025913 Bacteria 2528
66 Ga0207681_10008748 3300025923 Bacteria 6185
67 Ga0207650_10098599 3300025925 Bacteria 2245
68 Ga0207644_10048350 3300025931 Unclassified 3041
69 Ga0207690_10065916 3300025932 Bacteria 2478
70 Ga0207711_10000141 3300025941 Bacteria 77173
71 Ga0207711_10251631 3300025941 Bacteria 1623
72 Ga0207689_10205119 3300025942 Bacteria 1628
73 Ga0207661_10008309 3300025944 Bacteria 7415
74 Ga0207661_10071788 3300025944 Bacteria 2831
75 Ga0207651_10264997 3300025960 Bacteria 1412
76 Ga0207712_10005739 3300025961 Bacteria 7824
77 Ga0207658_10042434 3300025986 Unclassified 3300
78 Ga0207648_10077410 3300026089 Bacteria 2899
79 Ga0207675_100010638 3300026118 Bacteria 8620
80 Ga0207683_10071848 3300026121 Bacteria 3060
81 Ga0207428_10007767 3300027907 Bacteria 9760
82 Ga0207428_10127022 3300027907 Bacteria 1952
83 Ga0268265_10068027 3300028380 Bacteria 2760
84 Ga0268265_10320353 3300028380 Unclassified 1404
85 Ga0307408_100007136 3300031548 Bacteria 7395
86 Ga0307408_100018328 3300031548 Bacteria 4697
87 Ga0307408_100058135 3300031548 Bacteria 2810
88 Ga0307416_100231299 3300032002 Bacteria 1782
89 Ga0307411_10008216 3300032005 Bacteria 5389
90 Ga0307411_10012940 3300032005 Bacteria 4579
91 Ga0307411_10177724 3300032005 Bacteria 1612
92 Ga0439461_0011377 3300041410 Bacteria 1650
93 Ga0439441_004489 3300042001 Bacteria 2119
94 Ga0439464_0005713 3300042439 Bacteria 3226
95 Ga0439464_0025946 3300042439 Bacteria 1624
96 Ga0439460_0024107 3300042461 Bacteria 1683
97 Ga0466972_0017145 3300044658 Bacteria 3622
98 Ga0495651_0001689 3300046462 Bacteria 17064
99 Ga0495662_0000630 3300046476 Bacteria 16413
100 Ga0495664_0000501 3300046477 Bacteria 19511
101 Ga0495608_0087924 3300046511 Bacteria 2012
102 Ga0495628_0002217 3300046516 Bacteria 17575
103 Ga0495630_0129574 3300046517 Bacteria 1915
104 Ga0495652_0062924 3300046529 Bacteria 3126
105 Ga0495640_0045878 3300046533 Bacteria 3031
106 Ga0495587_0028091 3300046536 Bacteria 3424
107 Ga0495645_0003682 3300046543 Bacteria 10416
108 Ga0495667_0028554 3300046559 Bacteria 3757
109 Ga0495634_0066684 3300046642 Bacteria 2382
110 Ga0495599_0070114 3300046678 Bacteria 2187
111 Ga0495623_0034057 3300046679 Bacteria 3267
112 Ga0495646_0061331 3300046680 Bacteria 2240
113 Ga0495604_0015633 3300047317 Bacteria 6059
114 Ga0495674_0063071 3300047319 Bacteria 3224
115 Ga0495680_0010492 3300047322 Bacteria 8267
116 Ga0495684_0134934 3300047471 Bacteria 1852
117 Ga0496102_0013174 3300048905 Bacteria 7155
118 Ga0496104_0012906 3300048907 Bacteria 7524
119 Ga0496106_0124927 3300048909 Bacteria 2014
120 Ga0496110_0050400 3300048913 Unclassified 3655
121 Ga0496111_0051467 3300048914 Unclassified 2973
122 Ga0496112_0000263 3300048915 Bacteria 33684
123 Ga0496113_0079071 3300048916 Bacteria 2517
124 Ga0501033_0001112 3300049570 Bacteria 24410
125 Ga0501033_0022076 3300049570 Bacteria 4801
126 Ga0501036_0002058 3300049572 Bacteria 15666
127 Ga0501037_0091597 3300049573 Bacteria 2198
128 Ga0501038_0096388 3300049574 Bacteria 2469
129 Ga0501039_0023488 3300049575 Bacteria 4732
130 Ga0501039_0053783 3300049575 Bacteria 3116
131 Ga0501043_0119722 3300049579 Bacteria 2064
132 Ga0501046_0022465 3300049580 Bacteria 5197
133 Ga0501047_0045263 3300049581 Bacteria 4254
134 Ga0501067_0007759 3300049583 Bacteria 5969
135 Ga0501068_0014583 3300049584 Bacteria 4497
136 Ga0501069_0016474 3300049585 Bacteria 3971
137 Ga0501069_0017976 3300049585 Bacteria 3812
138 Ga0501070_0004808 3300049586 Bacteria 11546
139 Ga0501070_0030951 3300049586 Bacteria 4482
140 Ga0501071_0005026 3300049587 Bacteria 8456
141 Ga0501071_0118220 3300049587 Bacteria 1964
142 Ga0501071_0184209 3300049587 Bacteria 1565
143 Ga0501072_0028041 3300049588 Bacteria 4396
144 Ga0501072_0049748 3300049588 Bacteria 3300
145 Ga0501072_0078148 3300049588 Bacteria 2620
146 Ga0501073_0012553 3300049589 Bacteria 6183
147 Ga0501074_0009814 3300049590 Bacteria 6953
148 Ga0501075_0174334 3300049591 Bacteria 1641
149 Ga0501076_0135946 3300049592 Bacteria 1995
150 Ga0501076_0241386 3300049592 Bacteria 1478
151 Ga0501079_0012603 3300049741 Bacteria 6457
152 Ga0501080_0016192 3300049742 Bacteria 6883
153 Ga0501080_0069744 3300049742 Bacteria 3269
154 Ga0501080_0129223 3300049742 Bacteria 2339
155 Ga0501083_0017256 3300049744 Bacteria 5033
156 Ga0501044_0047094 3300049823 Bacteria 4460
157 Ga0501045_0030454 3300049824 Bacteria 3906
158 nmdc:mga03683_1722_c1 3300050489 Bacteria 6596
159 nmdc:mga00v17_3776_c1 3300050491 Bacteria 7824
160 nmdc:mga0yw44_9252_c1 3300050492 Bacteria 4963
161 nmdc:mga0k408_126790_c1 3300050493 Bacteria 1514
162 nmdc:mga06z11_83430_c1 3300050494 Bacteria 1720
163 nmdc:mga06z11_9208_c2 3300050494 Bacteria 2195
164 nmdc:mga05p37_1288_c1 3300050507 Bacteria 29118
165 nmdc:mga05p37_23864_c1 3300050507 Bacteria 7427
166 nmdc:mga05p37_3307_c1 3300050507 Bacteria 18808
167 nmdc:mga05p37_35396_c1 3300050507 Bacteria 6122
168 nmdc:mga09592_2695_c1 3300050508 Bacteria 14364
169 nmdc:mga09592_9354_c1 3300050508 Bacteria 7970
170 nmdc:mga0qj67_2765_c1 3300050509 Bacteria 12584
171 nmdc:mga0qj67_293302_c1 3300050509 Unclassified 1318
172 nmdc:mga06r32_17080_c1 3300050510 Bacteria 6622
173 nmdc:mga06r32_87284_c1 3300050510 Bacteria 3044
174 nmdc:mga08y16_8217_c1 3300050511 Bacteria 10916
175 nmdc:mga0n895_35623_c1 3300050512 Bacteria 4800
176 nmdc:mga0n895_59454_c1 3300050512 Bacteria 3770
177 nmdc:mga08x19_12878_c1 3300050514 Bacteria 5046
178 nmdc:mga0a205_432625_c1 3300050515 Bacteria 1177
179 nmdc:mga0a205_63711_c1 3300050515 Bacteria 3561
180 Ga0500568_0000243 3300053139 Bacteria 46464
181 Ga0501084_0046484 3300054114 Bacteria 3637
182 Ga0590071_000513 3300059421 Bacteria 11298
183 Ga0590074_000136 3300059423 Bacteria 8694
184 Ga0590075_001228 3300059424 Bacteria 6478
185 Ga0590075_004064 3300059424 Bacteria 3461
186 Ga0590077_000078 3300059426 Bacteria 24810
187 Ga0501082_0009086 3300060353 Bacteria 8573
188 Ga0157375_10176526
189 Ga0065712_10075399
190 Ga0065715_10089902
191 Ga0065715_10091003
192 Ga0065715_10098295
193 Ga0065715_10115862
194 Ga0070683_100064332
195 Ga0070670_100069519
196 Ga0068869_100037296
197 Ga0070680_100064761
198 Ga0070661_100027210
199 Ga0070669_100001018
200 Ga0070671_100092473
201 Ga0070674_100006719
202 Ga0070667_100007773
203 Ga0070678_100067446
204 Ga0070678_100117051
205 Ga0070681_10056052
206 Ga0070684_100001901
207 Ga0070664_100010150
208 Ga0075365_10033409
209 Ga0075368_10009606
210 Ga0075368_10073129
211 Ga0075364_10054328
212 Ga0075362_10001516
213 Ga0075367_10019855
214 Ga0075367_10050717
215 Ga0075367_10086422
216 Ga0075366_10014944
217 Ga0075366_10021470
218 Ga0075366_10070294
219 Ga0075428_100000769
220 Ga0075428_100037850
221 Ga0075430_100007202
222 Ga0075430_100262611
223 Ga0075431_100029471
224 Ga0075431_100066805
225 Ga0075431_100202369
226 Ga0075431_100273935
227 Ga0075433_10058658
228 Ga0075433_10251523
229 Ga0075434_100000789
230 Ga0075429_100038658
231 Ga0075436_100025445
232 Ga0105240_10165757
233 Ga0111539_10044524
234 Ga0111539_10053954
235 Ga0114129_10000688
236 Ga0114129_10004960
237 Ga0114129_10007637
238 Ga0114129_10031402
239 Ga0114129_10057920
240 Ga0114129_10140846
241 Ga0105248_10000166
242 Ga0105248_10284054
243 Ga0105249_10009175
244 Ga0157370_10085157
245 Ga0157378_10461757
246 Ga0157375_10082182
247 Ga0163163_10111323
248 Ga0207697_10001035
249 Ga0207697_10038110
250 Ga0207688_10004063
251 Ga0207705_10041820
252 Ga0207695_10125600
253 Ga0207681_10008748
254 Ga0207650_10098599
255 Ga0207644_10048350
256 Ga0207690_10065916
257 Ga0207711_10000141
258 Ga0207711_10251631
259 Ga0207689_10205119
260 Ga0207661_10008309
261 Ga0207661_10071788
262 Ga0207651_10264997
263 Ga0207712_10005739
264 Ga0207658_10042434
265 Ga0207648_10077410
266 Ga0207675_100010638
267 Ga0207683_10071848
268 Ga0207428_10007767
269 Ga0207428_10127022
270 Ga0268265_10068027
271 Ga0268265_10320353
272 Ga0307408_100007136
273 Ga0307408_100018328
274 Ga0307408_100058135
275 Ga0307416_100231299
276 Ga0307411_10008216
277 Ga0307411_10012940
278 Ga0307411_10177724
279 Ga0439461_0011377
280 Ga0439441_004489
281 Ga0439464_0005713
282 Ga0439464_0025946
283 Ga0439460_0024107
284 Ga0466972_0017145
285 Ga0495651_0001689
286 Ga0495662_0000630
287 Ga0495664_0000501
288 Ga0495608_0087924
289 Ga0495628_0002217
290 Ga0495630_0129574
291 Ga0495652_0062924
292 Ga0495640_0045878
293 Ga0495587_0028091
294 Ga0495645_0003682
295 Ga0495667_0028554
296 Ga0495634_0066684
297 Ga0495599_0070114
298 Ga0495623_0034057
299 Ga0495646_0061331
300 Ga0495604_0015633
301 Ga0495674_0063071
302 Ga0495680_0010492
303 Ga0495684_0134934
304 Ga0496102_0013174
305 Ga0496104_0012906
306 Ga0496106_0124927
307 Ga0496110_0050400
308 Ga0496111_0051467
309 Ga0496112_0000263
310 Ga0496113_0079071
311 Ga0501033_0001112
312 Ga0501033_0022076
313 Ga0501036_0002058
314 Ga0501037_0091597
315 Ga0501038_0096388
316 Ga0501039_0023488
317 Ga0501039_0053783
318 Ga0501043_0119722
319 Ga0501046_0022465
320 Ga0501047_0045263
321 Ga0501067_0007759
322 Ga0501068_0014583
323 Ga0501069_0016474
324 Ga0501069_0017976
325 Ga0501070_0004808
326 Ga0501070_0030951
327 Ga0501071_0005026
328 Ga0501071_0118220
329 Ga0501071_0184209
330 Ga0501072_0028041
331 Ga0501072_0049748
332 Ga0501072_0078148
333 Ga0501073_0012553
334 Ga0501074_0009814
335 Ga0501075_0174334
336 Ga0501076_0135946
337 Ga0501076_0241386
338 Ga0501079_0012603
339 Ga0501080_0016192
340 Ga0501080_0069744
341 Ga0501080_0129223
342 Ga0501083_0017256
343 Ga0501044_0047094
344 Ga0501045_0030454
345 nmdc:mga03683_1722_c1
346 nmdc:mga00v17_3776_c1
347 nmdc:mga0yw44_9252_c1
348 nmdc:mga0k408_126790_c1
349 nmdc:mga06z11_83430_c1
350 nmdc:mga06z11_9208_c2
351 nmdc:mga05p37_1288_c1
352 nmdc:mga05p37_23864_c1
353 nmdc:mga05p37_3307_c1
354 nmdc:mga05p37_35396_c1
355 nmdc:mga09592_2695_c1
356 nmdc:mga09592_9354_c1
357 nmdc:mga0qj67_2765_c1
358 nmdc:mga0qj67_293302_c1
359 nmdc:mga06r32_17080_c1
360 nmdc:mga06r32_87284_c1
361 nmdc:mga08y16_8217_c1
362 nmdc:mga0n895_35623_c1
363 nmdc:mga0n895_59454_c1
364 nmdc:mga08x19_12878_c1
365 nmdc:mga0a205_432625_c1
366 nmdc:mga0a205_63711_c1
367 Ga0500568_0000243
368 Ga0501084_0046484
369 Ga0590071_000513
370 Ga0590074_000136
371 Ga0590075_001228
372 Ga0590075_004064
373 Ga0590077_000078
374 Ga0501082_0009086

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13517

FG-GAP_3

FG-GAP-like repeat

151

213

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4a7z-assembly1.cif.gz_A complex of bifunctional aldos-2-ulose dehydratase with the reaction intermediate ascopyrone m 0.6625 17 386
5y2z-assembly5.cif.gz_J crystal structure of human lgi1 eptp-adam22 complex 0.6381 23 384
7fik-assembly1.cif.gz_H the cryo-em structure of the cr subunit from x. laevis npc 0.6294 32 350
5y2z-assembly5.cif.gz_J crystal structure of human lgi1 eptp-adam22 complex 0.6282 23 384
4a7z-assembly1.cif.gz_A complex of bifunctional aldos-2-ulose dehydratase with the reaction intermediate ascopyrone m 0.6272 17 386
ID Description Score Start End Superfamily
af_A0A2R8PYI8_197_421_2.120.10.30 Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain 0.6378 83 299 2.120.10.30
af_Q4DUI0_606_805_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.623 100 298 2.130.10.10
af_A0A0R0E6S3_1_117_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6169 87 181 2.130.10.10
af_Q91VN0_28_290_2.120.10.30 Mainly Beta;6 Propeller;Neuraminidase;TolB, C-terminal domain 0.6106 37 300 2.120.10.30
af_A0A1D6H673_227_503_2.130.10.10 Mainly Beta;7 Propeller;Methylamine Dehydrogenase; Chain H;YVTN repeat-like/Quinoprotein amine dehydrogenase 0.6104 39 298 2.130.10.10
ID Description Score Start End GO Terms
AF-A0A7S7SN71-F1-model_v4 VCBS repeat-containing protein 0.9243 13 387
AF-A0A7C4DL93-F1-model_v4 VCBS repeat-containing protein 0.9116 11 392
AF-A0A7X7K0K4-F1-model_v4 VCBS repeat-containing protein 0.9036 18 137
AF-A0A7S7SN71-F1-model_v4 VCBS repeat-containing protein 0.89 13 387
AF-A0A7X7K0K4-F1-model_v4 VCBS repeat-containing protein 0.8887 18 137

Map