F286214

General Info

Members Datasets Scaffolds Average Seq Length
186 132 372 351

Family's Representative Sequence

Representative Sequence 3300031240|Ga0265320_10059531|Ga0265320_100595311
Length 349
Sequence VTAEPKPREISPLPQEGDELSIRPLSLAEFIGQKKTRENLKVFIDAARARREPLDHVLLAGPPGLGKTTLAQIIAKELGAGFRATSGPVIARAGDLAAILTNLQPNDVLFIDEIHRLNAAVEEILYPAMEDRQLDLIIGEGPAARSVRIDLPPFTLVAATTRSGLITRPLRERFGIPLRLEFYEPDELAQIVSRGAGIIGLEITAEGAFEIARRSRGTPRIAGRLTRRVRDFSGGKKVDAKAADAALLKLEVDGQGLDAMDRRYMRCIAENYGGGPVGVETIAAGLSEQRDVLEEVVEPYLIQCGLMLRTPRGRMISDAGYKYMGLPVPQNAKDRQLSMLENLNAGEER

Samples

Sample ID Description Type Environment
1 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
28 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
29 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
30 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
35 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
36 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
37 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
46 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
47 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
48 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
49 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
50 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
51 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
52 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
75 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
76 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
77 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
80 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
81 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
85 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
86 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
87 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
93 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
94 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
95 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
96 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
97 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
98 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
99 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
100 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
101 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
102 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
105 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
117 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
118 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
119 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
120 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
121 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
122 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
123 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
124 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
125 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
126 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
127 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
128 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
129 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
130 2524023250 Niveispirillum irakense DSM 11586 Isolate Unclassified
131 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
132 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.39
Metatranscriptomes 0
Isolates 1.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.6
Nodule 0
Rhizoplane 2.15
Rhizosphere 81.72
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265320_10059531 3300031240 Bacteria 1826
2 Ga0070658_10008749 3300005327 Bacteria 8132
3 Ga0070680_100132655 3300005336 Bacteria 2085
4 Ga0070660_100194700 3300005339 Bacteria 1643
5 Ga0070689_100181033 3300005340 Bacteria 1712
6 Ga0070661_100047253 3300005344 Bacteria 3149
7 Ga0070675_100375585 3300005354 Bacteria 1264
8 Ga0070709_10002600 3300005434 Bacteria 9749
9 Ga0070714_100011035 3300005435 Bacteria 7157
10 Ga0070713_100018899 3300005436 Bacteria 5247
11 Ga0070713_100049034 3300005436 Bacteria 3481
12 Ga0070710_10005366 3300005437 Bacteria 6080
13 Ga0070694_100100977 3300005444 Bacteria 2041
14 Ga0070708_100332081 3300005445 Bacteria 1432
15 Ga0070681_10024490 3300005458 Bacteria 6075
16 Ga0070706_100086857 3300005467 Bacteria 2898
17 Ga0070706_100106817 3300005467 Bacteria 2604
18 Ga0070707_100006275 3300005468 Bacteria 11060
19 Ga0070698_100000495 3300005471 Bacteria 41883
20 Ga0070698_100007601 3300005471 Bacteria 11729
21 Ga0070699_100152548 3300005518 Bacteria 2044
22 Ga0070679_100019801 3300005530 Bacteria 6551
23 Ga0070679_100530546 3300005530 Bacteria 1121
24 Ga0070697_100205052 3300005536 Bacteria 1677
25 Ga0070665_100011554 3300005548 Bacteria 8926
26 Ga0070665_100024389 3300005548 Bacteria 6091
27 Ga0068855_100050914 3300005563 Bacteria 4879
28 Ga0068855_100205752 3300005563 Bacteria 2214
29 Ga0068857_100006082 3300005577 Bacteria 10309
30 Ga0068857_100059965 3300005577 Bacteria 3381
31 Ga0068852_100056162 3300005616 Bacteria 3401
32 Ga0068864_100121356 3300005618 Bacteria 2337
33 Ga0068860_100082820 3300005843 Bacteria 3051
34 Ga0081455_10003403 3300005937 Bacteria 18301
35 Ga0081455_10005501 3300005937 Bacteria 13881
36 Ga0081455_10016197 3300005937 Bacteria 7206
37 Ga0081539_10002551 3300005985 Bacteria 25286
38 Ga0081539_10006144 3300005985 Bacteria 11684
39 Ga0075365_10178455 3300006038 Bacteria 1484
40 Ga0070712_100078723 3300006175 Bacteria 2380
41 Ga0070712_100096122 3300006175 Bacteria 2180
42 Ga0075362_10027578 3300006177 Bacteria 2432
43 Ga0075366_10047410 3300006195 Bacteria 2547
44 Ga0075370_10042816 3300006353 Bacteria 2558
45 Ga0075434_100320086 3300006871 Bacteria 1571
46 Ga0075436_100151595 3300006914 Bacteria 1631
47 Ga0099794_10018670 3300007265 Bacteria 3113
48 Ga0099795_10031719 3300007788 Bacteria 1822
49 Ga0105240_10003714 3300009093 Bacteria 23588
50 Ga0105243_10338808 3300009148 Bacteria 1377
51 Ga0105238_10001423 3300009551 Bacteria 23977
52 Ga0105239_10211230 3300010375 Bacteria 2175
53 Ga0157370_10070492 3300013104 Bacteria 3299
54 Ga0157372_10214514 3300013307 Bacteria 2231
55 Ga0163163_10463916 3300014325 Bacteria 1327
56 Ga0157380_10037639 3300014326 Bacteria 3749
57 Ga0163161_10325601 3300017792 Bacteria 1216
58 Ga0213873_10017910 3300021358 Bacteria 1622
59 Ga0213872_10000084 3300021361 Bacteria 86548
60 Ga0213874_10038633 3300021377 Bacteria 1418
61 Ga0213875_10000081 3300021388 Bacteria 114181
62 Ga0213875_10000410 3300021388 Bacteria 37729
63 Ga0213875_10002791 3300021388 Bacteria 10275
64 Ga0213871_10001719 3300021441 Bacteria 3791
65 Ga0209675_1006072 3300025291 Bacteria 4928
66 Ga0207688_10038255 3300025901 Bacteria 2662
67 Ga0207705_10015133 3300025909 Bacteria 5546
68 Ga0207684_10071389 3300025910 Bacteria 2950
69 Ga0207684_10098016 3300025910 Bacteria 2503
70 Ga0207707_10026679 3300025912 Bacteria 5049
71 Ga0207695_10000593 3300025913 Bacteria 72987
72 Ga0207695_10002062 3300025913 Bacteria 30645
73 Ga0207695_10049473 3300025913 Bacteria 4430
74 Ga0207695_10057090 3300025913 Bacteria 4058
75 Ga0207695_10103315 3300025913 Bacteria 2841
76 Ga0207693_10026518 3300025915 Bacteria 4586
77 Ga0207693_10226960 3300025915 Bacteria 1467
78 Ga0207660_10024961 3300025917 Bacteria 4052
79 Ga0207660_10368468 3300025917 Bacteria 1153
80 Ga0207657_10180817 3300025919 Bacteria 1705
81 Ga0207652_10019499 3300025921 Bacteria 5578
82 Ga0207652_10474049 3300025921 Bacteria 1128
83 Ga0207694_10017518 3300025924 Bacteria 5415
84 Ga0207700_10040681 3300025928 Bacteria 3394
85 Ga0207664_10060003 3300025929 Bacteria 3031
86 Ga0207664_10162565 3300025929 Bacteria 1905
87 Ga0207706_10106087 3300025933 Bacteria 2472
88 Ga0207665_10012282 3300025939 Bacteria 5624
89 Ga0207691_10152576 3300025940 Bacteria 2030
90 Ga0207679_10056994 3300025945 Bacteria 2888
91 Ga0207702_10039296 3300026078 Bacteria 3963
92 Ga0207674_10099594 3300026116 Bacteria 2889
93 Ga0207674_10259238 3300026116 Bacteria 1686
94 Ga0207674_10405447 3300026116 Bacteria 1317
95 Ga0207698_10013918 3300026142 Bacteria 5328
96 Ga0268265_10306749 3300028380 Bacteria 1432
97 Ga0268264_10365741 3300028381 Bacteria 1377
98 Ga0265330_10080274 3300031235 Bacteria 1406
99 Ga0265340_10004478 3300031247 Bacteria 7801
100 Ga0265340_10023024 3300031247 Bacteria 3179
101 Ga0265340_10031918 3300031247 Bacteria 2632
102 Ga0265339_10112761 3300031249 Bacteria 1405
103 Ga0265331_10008344 3300031250 Bacteria 5898
104 Ga0265316_10145116 3300031344 Bacteria 1780
105 Ga0265313_10000071 3300031595 Bacteria 99087
106 Ga0265313_10057701 3300031595 Bacteria 1831
107 Ga0265314_10039877 3300031711 Bacteria 3377
108 Ga0265314_10089797 3300031711 Bacteria 2003
109 Ga0265314_10098599 3300031711 Bacteria 1884
110 Ga0265342_10009768 3300031712 Bacteria 6717
111 Ga0265342_10133862 3300031712 Bacteria 1387
112 Ga0307409_100037380 3300031995 Bacteria 3580
113 Ga0373931_0091774 3300035691 Bacteria 1693
114 Ga0373937_0050113 3300036401 Bacteria 3824
115 Ga0373925_0071917 3300037068 Bacteria 2616
116 Ga0395899_0008032 3300037312 Bacteria 8123
117 Ga0395899_0023460 3300037312 Bacteria 4672
118 Ga0395899_0085844 3300037312 Bacteria 2287
119 Ga0395900_0033277 3300037418 Bacteria 5306
120 Ga0395898_0008476 3300037466 Bacteria 10863
121 Ga0436364_0207585 3300037853 Bacteria 136246
122 Ga0436364_0526342 3300037853 Bacteria 45576
123 Ga0436364_0618716 3300037853 Bacteria 33597
124 Ga0436364_1377750 3300037853 Bacteria 2124
125 Ga0395901_0009146 3300038443 Bacteria 10034
126 Ga0395901_0077678 3300038443 Bacteria 3465
127 Ga0436365_0216029 3300039437 Bacteria 1668
128 Ga0436365_1823431 3300039437 Bacteria 6754
129 Ga0436360_0206560 3300039438 Bacteria 1321
130 Ga0436360_0398595 3300039438 Bacteria 2767
131 Ga0436360_0525718 3300039438 Bacteria 8483
132 Ga0436360_0713878 3300039438 Bacteria 1869
133 Ga0436360_0953894 3300039438 Bacteria 1738
134 Ga0436360_1247150 3300039438 Bacteria 1846
135 Ga0436361_0391278 3300039447 Bacteria 1805
136 Ga0436361_1107754 3300039447 Bacteria 4121
137 Ga0436363_0107057 3300039450 Bacteria 2107
138 Ga0436363_0786839 3300039450 Bacteria 2299
139 Ga0436363_1319657 3300039450 Bacteria 3131
140 Ga0436362_0226444 3300039453 Bacteria 6723
141 Ga0436362_0669034 3300039453 Bacteria 3213
142 Ga0436362_0845409 3300039453 Bacteria 3478
143 Ga0466963_0076982 3300044694 Bacteria 2253
144 Ga0451576_0003714 3300045051 Bacteria 20640
145 Ga0466967_0034038 3300045976 Bacteria 4319
146 Ga0466967_0155724 3300045976 Bacteria 2140
147 Ga0495586_0034031 3300046535 Bacteria 2736
148 Ga0495621_0048475 3300046539 Bacteria 1513
149 Ga0495680_0064093 3300047322 Bacteria 2819
150 Ga0496102_0027437 3300048905 Bacteria 5085
151 Ga0496104_0063265 3300048907 Bacteria 3509
152 Ga0496112_0185617 3300048915 Bacteria 2043
153 Ga0496113_0083932 3300048916 Bacteria 2445
154 Ga0501034_0008874 3300049571 Bacteria 10573
155 Ga0501034_0011978 3300049571 Bacteria 8963
156 Ga0501037_0169271 3300049573 Bacteria 1554
157 Ga0501038_0000726 3300049574 Bacteria 29443
158 Ga0501041_0084682 3300049577 Bacteria 1954
159 Ga0501042_0034761 3300049578 Bacteria 3575
160 Ga0501068_0117555 3300049584 Bacteria 1656
161 Ga0501080_0034952 3300049742 Bacteria 4693
162 Ga0501080_0230132 3300049742 Bacteria 1694
163 Ga0501083_0002160 3300049744 Bacteria 13482
164 Ga0501083_0039492 3300049744 Bacteria 3205
165 Ga0501035_0166328 3300049822 Bacteria 1907
166 Ga0501044_0235729 3300049823 Bacteria 1775
167 Ga0501044_0267570 3300049823 Bacteria 1646
168 nmdc:mga0yw44_13215_c1 3300050492 Bacteria 4338
169 nmdc:mga0yw44_82343_c1 3300050492 Bacteria 2019
170 nmdc:mga0k408_54010_c1 3300050493 Bacteria 2329
171 nmdc:mga0n895_225844_c1 3300050512 Bacteria 1901
172 nmdc:mga08x19_59772_c1 3300050514 Bacteria 2468
173 nmdc:mga0sz30_14282_c1 3300050516 Bacteria 3123
174 Ga0495619_0010106 3300053085 Bacteria 5941
175 Ga0500651_0007051 3300053093 Bacteria 6529
176 Ga0500595_028824 3300053119 Bacteria 1890
177 Ga0500618_003983 3300053125 Bacteria 4875
178 Ga0500652_000100 3300053131 Bacteria 34600
179 Ga0500588_0010012 3300053146 Bacteria 2274
180 Ga0500616_0001020 3300053153 Bacteria 29703
181 Ga0500636_0064985 3300053177 Bacteria 2124
182 Ga0501082_0055056 3300060353 Bacteria 3428
183 Ga0501082_0175570 3300060353 Bacteria 1863
184 2524612038 2524023250 Bacteria 5457705
185 2883296042 2883291878 Bacteria 5894118
186 2883358798 2883354860 Bacteria 5865246
187 Ga0265320_10059531
188 Ga0070658_10008749
189 Ga0070680_100132655
190 Ga0070660_100194700
191 Ga0070689_100181033
192 Ga0070661_100047253
193 Ga0070675_100375585
194 Ga0070709_10002600
195 Ga0070714_100011035
196 Ga0070713_100018899
197 Ga0070713_100049034
198 Ga0070710_10005366
199 Ga0070694_100100977
200 Ga0070708_100332081
201 Ga0070681_10024490
202 Ga0070706_100086857
203 Ga0070706_100106817
204 Ga0070707_100006275
205 Ga0070698_100000495
206 Ga0070698_100007601
207 Ga0070699_100152548
208 Ga0070679_100019801
209 Ga0070679_100530546
210 Ga0070697_100205052
211 Ga0070665_100011554
212 Ga0070665_100024389
213 Ga0068855_100050914
214 Ga0068855_100205752
215 Ga0068857_100006082
216 Ga0068857_100059965
217 Ga0068852_100056162
218 Ga0068864_100121356
219 Ga0068860_100082820
220 Ga0081455_10003403
221 Ga0081455_10005501
222 Ga0081455_10016197
223 Ga0081539_10002551
224 Ga0081539_10006144
225 Ga0075365_10178455
226 Ga0070712_100078723
227 Ga0070712_100096122
228 Ga0075362_10027578
229 Ga0075366_10047410
230 Ga0075370_10042816
231 Ga0075434_100320086
232 Ga0075436_100151595
233 Ga0099794_10018670
234 Ga0099795_10031719
235 Ga0105240_10003714
236 Ga0105243_10338808
237 Ga0105238_10001423
238 Ga0105239_10211230
239 Ga0157370_10070492
240 Ga0157372_10214514
241 Ga0163163_10463916
242 Ga0157380_10037639
243 Ga0163161_10325601
244 Ga0213873_10017910
245 Ga0213872_10000084
246 Ga0213874_10038633
247 Ga0213875_10000081
248 Ga0213875_10000410
249 Ga0213875_10002791
250 Ga0213871_10001719
251 Ga0209675_1006072
252 Ga0207688_10038255
253 Ga0207705_10015133
254 Ga0207684_10071389
255 Ga0207684_10098016
256 Ga0207707_10026679
257 Ga0207695_10000593
258 Ga0207695_10002062
259 Ga0207695_10049473
260 Ga0207695_10057090
261 Ga0207695_10103315
262 Ga0207693_10026518
263 Ga0207693_10226960
264 Ga0207660_10024961
265 Ga0207660_10368468
266 Ga0207657_10180817
267 Ga0207652_10019499
268 Ga0207652_10474049
269 Ga0207694_10017518
270 Ga0207700_10040681
271 Ga0207664_10060003
272 Ga0207664_10162565
273 Ga0207706_10106087
274 Ga0207665_10012282
275 Ga0207691_10152576
276 Ga0207679_10056994
277 Ga0207702_10039296
278 Ga0207674_10099594
279 Ga0207674_10259238
280 Ga0207674_10405447
281 Ga0207698_10013918
282 Ga0268265_10306749
283 Ga0268264_10365741
284 Ga0265330_10080274
285 Ga0265340_10004478
286 Ga0265340_10023024
287 Ga0265340_10031918
288 Ga0265339_10112761
289 Ga0265331_10008344
290 Ga0265316_10145116
291 Ga0265313_10000071
292 Ga0265313_10057701
293 Ga0265314_10039877
294 Ga0265314_10089797
295 Ga0265314_10098599
296 Ga0265342_10009768
297 Ga0265342_10133862
298 Ga0307409_100037380
299 Ga0373931_0091774
300 Ga0373937_0050113
301 Ga0373925_0071917
302 Ga0395899_0008032
303 Ga0395899_0023460
304 Ga0395899_0085844
305 Ga0395900_0033277
306 Ga0395898_0008476
307 Ga0436364_0207585
308 Ga0436364_0526342
309 Ga0436364_0618716
310 Ga0436364_1377750
311 Ga0395901_0009146
312 Ga0395901_0077678
313 Ga0436365_0216029
314 Ga0436365_1823431
315 Ga0436360_0206560
316 Ga0436360_0398595
317 Ga0436360_0525718
318 Ga0436360_0713878
319 Ga0436360_0953894
320 Ga0436360_1247150
321 Ga0436361_0391278
322 Ga0436361_1107754
323 Ga0436363_0107057
324 Ga0436363_0786839
325 Ga0436363_1319657
326 Ga0436362_0226444
327 Ga0436362_0669034
328 Ga0436362_0845409
329 Ga0466963_0076982
330 Ga0451576_0003714
331 Ga0466967_0034038
332 Ga0466967_0155724
333 Ga0495586_0034031
334 Ga0495621_0048475
335 Ga0495680_0064093
336 Ga0496102_0027437
337 Ga0496104_0063265
338 Ga0496112_0185617
339 Ga0496113_0083932
340 Ga0501034_0008874
341 Ga0501034_0011978
342 Ga0501037_0169271
343 Ga0501038_0000726
344 Ga0501041_0084682
345 Ga0501042_0034761
346 Ga0501068_0117555
347 Ga0501080_0034952
348 Ga0501080_0230132
349 Ga0501083_0002160
350 Ga0501083_0039492
351 Ga0501035_0166328
352 Ga0501044_0235729
353 Ga0501044_0267570
354 nmdc:mga0yw44_13215_c1
355 nmdc:mga0yw44_82343_c1
356 nmdc:mga0k408_54010_c1
357 nmdc:mga0n895_225844_c1
358 nmdc:mga08x19_59772_c1
359 nmdc:mga0sz30_14282_c1
360 Ga0495619_0010106
361 Ga0500651_0007051
362 Ga0500595_028824
363 Ga0500618_003983
364 Ga0500652_000100
365 Ga0500588_0010012
366 Ga0500616_0001020
367 Ga0500636_0064985
368 Ga0501082_0055056
369 Ga0501082_0175570
370 2524612038
371 2883296042
372 2883358798

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05496

RuvB_N

Holliday junction DNA helicase RuvB P-loop domain

22

180

0.99

PF05491

RuvB_C

RuvB C-terminal winged helix domain

254

325

0.98

PF17864

AAA_lid_4

RuvB AAA lid domain

183

253

0.98

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

57

182

0.95

PF06068

TIP49

TIP49 P-loop domain

17

90

0.92

PF03215

Rad17

Rad17 P-loop domain

22

107

0.86

PF07728

AAA_5

AAA domain (dynein-related subfamily)

56

174

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1in7-assembly1.cif.gz_A thermotoga maritima ruvb r170a 0.9831 22 332
1in4-assembly1.cif.gz_A thermotoga maritima ruvb holliday junction branch migration motor 0.9825 21 332
1in6-assembly1.cif.gz_A thermotoga maritima ruvb k64r mutant 0.9824 22 332
1j7k-assembly1.cif.gz_A thermotoga maritima ruvb p216g mutant 0.9816 23 332
1in8-assembly1.cif.gz_A thermotoga maritima ruvb t158v 0.9814 21 332
ID Description Score Start End Superfamily
1in5A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9907 259 331 1.10.10.10
6blbA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9877 23 182 3.40.50.300
6blbA03 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9851 259 333 1.10.10.10
6blbA02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9844 183 258 1.10.8.60
1in5A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9774 259 331 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6A4U9S9-F1-model_v4 Holliday junction DNA helicase RuvB 0.9971 259 333 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A533XMW0-F1-model_v4 Holliday junction branch migration DNA helicase RuvB 0.9971 267 330 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A6M1X791-F1-model_v4 deleted 0.9968 23 118
AF-A0A7Y2ISW1-F1-model_v4 AAA family ATPase 0.9956 28 136 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A537PGC3-F1-model_v4 Holliday junction branch migration DNA helicase RuvB 0.9954 253 333 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378

Map