F286187

General Info

Members Datasets Scaffolds Average Seq Length
186 110 372 379

Family's Representative Sequence

Representative Sequence 3300028573|Ga0265334_10011430|Ga0265334_100114303
Length 427
Sequence MSFSGGATGCYEFAHVTPEPAHNTWELRRLGGAFKTLGFTRKHAYLARVPQDIRSQTKEELEAQFRAWGEPAYRVAQILDWLYARRVTSWDAMTNLPKALREKLRGHYSLQILELARKQGSRDTTQKFLWRLADHSLIESVLIPANPALYGEVSDRHTLCVSTQVGCAYGCKFCASGLDGWKRNLGAEEIVEQVLAVERWNLQNAQDEPRNTETPASPKIADHTPRFIDNLVIMGMGEPLANYENLLKALKILNAPWGGGIGARKITISTSGLAPQIRRLADEPMQFRLALSLHGATDETRNKIMPVNRKYPLRELTAACEYYQKNKGRMVTFEYILIAGVNDGLDQVPPLARLARTLNAKVNLIPYNKVEDLPWERPTEEVQERFLAALEKQKVIATLRREKGHDIDAACGQLRLKTERELAGSIV

Samples

Sample ID Description Type Environment
1 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
33 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
34 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
35 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
36 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
51 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
52 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
53 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
54 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
55 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
56 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
57 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
58 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
59 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
60 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
61 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
62 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
65 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
70 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
71 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
72 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
73 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
74 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
75 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
77 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
78 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
79 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
80 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
81 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
82 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
83 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
84 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
85 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
86 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
87 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
88 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
89 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
90 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
91 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
92 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
93 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
94 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
95 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
96 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
97 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
98 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
99 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
100 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
101 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
102 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
103 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
104 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
105 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
106 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
107 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
108 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 5.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265334_10011430 3300028573 Bacteria 3739
2 Ga0065712_10068308 3300005290 Bacteria 11946
3 Ga0065707_10104004 3300005295 Bacteria 2719
4 Ga0070690_100218765 3300005330 Bacteria 1334
5 Ga0070670_100195454 3300005331 Bacteria 1757
6 Ga0070689_100002690 3300005340 Bacteria 11647
7 Ga0070689_100017498 3300005340 Bacteria 5266
8 Ga0070689_100110049 3300005340 Bacteria 2190
9 Ga0070689_100171089 3300005340 Bacteria 1760
10 Ga0070688_100069933 3300005365 Bacteria 2243
11 Ga0070688_100136144 3300005365 Unclassified 1663
12 Ga0070714_100034260 3300005435 Bacteria 4252
13 Ga0070713_100184462 3300005436 Unclassified 1877
14 Ga0070713_100204420 3300005436 Bacteria 1785
15 Ga0070713_100284542 3300005436 Bacteria 1518
16 Ga0070713_100288664 3300005436 Bacteria 1507
17 Ga0070713_100343608 3300005436 Bacteria 1383
18 Ga0070701_10068232 3300005438 Bacteria 1894
19 Ga0070708_100086151 3300005445 Bacteria 2852
20 Ga0070681_10205510 3300005458 Bacteria 1886
21 Ga0070704_100163469 3300005549 Bacteria 1763
22 Ga0068855_100038591 3300005563 Bacteria 5674
23 Ga0068857_100017917 3300005577 Bacteria 6211
24 Ga0068857_100140263 3300005577 Bacteria 2185
25 Ga0068856_100000155 3300005614 Bacteria 70571
26 Ga0068856_100047372 3300005614 Bacteria 4234
27 Ga0070702_100070261 3300005615 Bacteria 2066
28 Ga0068859_100451953 3300005617 Bacteria 1381
29 Ga0068864_100364278 3300005618 Bacteria 1367
30 Ga0068863_100073311 3300005841 Bacteria 3239
31 Ga0068863_100108512 3300005841 Bacteria 2642
32 Ga0068871_100013375 3300006358 Bacteria 6089
33 Ga0075428_100000173 3300006844 Bacteria 59939
34 Ga0075431_100469981 3300006847 Bacteria 1251
35 Ga0075434_100090015 3300006871 Bacteria 3070
36 Ga0075436_100081911 3300006914 Unclassified 2238
37 Ga0097620_100451921 3300006931 Bacteria 1381
38 Ga0105240_10017556 3300009093 Bacteria 9640
39 Ga0105240_10052357 3300009093 Bacteria 5133
40 Ga0111539_10107920 3300009094 Bacteria 3267
41 Ga0111539_10122177 3300009094 Bacteria 3052
42 Ga0111539_10130632 3300009094 Bacteria 2941
43 Ga0114129_10538396 3300009147 Bacteria 1520
44 Ga0105248_10107990 3300009177 Bacteria 3138
45 Ga0105238_10001680 3300009551 Bacteria 22244
46 Ga0105238_10140215 3300009551 Unclassified 2394
47 Ga0157374_10462387 3300013296 Bacteria 1271
48 Ga0157378_10242459 3300013297 Bacteria 1722
49 Ga0157375_10000027 3300013308 Bacteria 220909
50 Ga0163163_10000260 3300014325 Bacteria 53427
51 Ga0157376_10076031 3300014969 Bacteria 2868
52 Ga0207707_10235522 3300025912 Bacteria 1593
53 Ga0207707_10335560 3300025912 Bacteria 1304
54 Ga0207695_10013523 3300025913 Bacteria 9727
55 Ga0207695_10084814 3300025913 Bacteria 3197
56 Ga0207694_10005280 3300025924 Bacteria 9954
57 Ga0207650_10161631 3300025925 Bacteria 1775
58 Ga0207700_10158814 3300025928 Unclassified 1876
59 Ga0207700_10200377 3300025928 Bacteria 1682
60 Ga0207700_10305016 3300025928 Bacteria 1376
61 Ga0207664_10027456 3300025929 Bacteria 4315
62 Ga0207670_10001142 3300025936 Bacteria 13979
63 Ga0207670_10123605 3300025936 Bacteria 1885
64 Ga0207667_10058118 3300025949 Bacteria 4058
65 Ga0207667_10069855 3300025949 Bacteria 3656
66 Ga0207639_10086182 3300026041 Bacteria 2500
67 Ga0207702_10000647 3300026078 Bacteria 37987
68 Ga0207702_10016883 3300026078 Bacteria 6043
69 Ga0207641_10230684 3300026088 Bacteria 1720
70 Ga0207676_10133449 3300026095 Bacteria 2115
71 Ga0207674_10007713 3300026116 Bacteria 12523
72 Ga0207674_10198799 3300026116 Bacteria 1954
73 Ga0207428_10095414 3300027907 Bacteria 2304
74 Ga0265337_1003928 3300028556 Bacteria 6296
75 Ga0265337_1009283 3300028556 Bacteria 3518
76 Ga0265326_10026634 3300028558 Bacteria 1648
77 Ga0265319_1000001 3300028563 Bacteria 549513
78 Ga0265323_10000055 3300028653 Bacteria 61774
79 Ga0265336_10003294 3300028666 Bacteria 6368
80 Ga0265338_10000030 3300028800 Bacteria 260974
81 Ga0265338_10000062 3300028800 Bacteria 196060
82 Ga0265338_10000312 3300028800 Bacteria 87999
83 Ga0265338_10000660 3300028800 Bacteria 59683
84 Ga0265338_10004087 3300028800 Bacteria 19985
85 Ga0265338_10004362 3300028800 Bacteria 19148
86 Ga0265338_10006868 3300028800 Bacteria 14329
87 Ga0265338_10007229 3300028800 Bacteria 13864
88 Ga0265338_10009113 3300028800 Bacteria 11924
89 Ga0265338_10028862 3300028800 Bacteria 5520
90 Ga0265338_10047198 3300028800 Bacteria 3936
91 Ga0265338_10049010 3300028800 Bacteria 3834
92 Ga0265338_10100687 3300028800 Bacteria 2355
93 Ga0265324_10000888 3300029957 Bacteria 19007
94 Ga0265324_10010415 3300029957 Bacteria 3585
95 Ga0265324_10011159 3300029957 Bacteria 3433
96 Ga0265324_10028913 3300029957 Bacteria 1953
97 Ga0265324_10061880 3300029957 Bacteria 1279
98 Ga0265320_10002094 3300031240 Bacteria 14042
99 Ga0265320_10004873 3300031240 Bacteria 8717
100 Ga0265320_10015459 3300031240 Bacteria 4314
101 Ga0265320_10026022 3300031240 Bacteria 3069
102 Ga0265325_10055872 3300031241 Bacteria 2017
103 Ga0265329_10001850 3300031242 Bacteria 10014
104 Ga0265340_10011980 3300031247 Bacteria 4587
105 Ga0265339_10021999 3300031249 Bacteria 3700
106 Ga0265339_10047975 3300031249 Bacteria 2343
107 Ga0265316_10054430 3300031344 Bacteria 3133
108 Ga0307408_100117299 3300031548 Bacteria 2056
109 Ga0265313_10042339 3300031595 Bacteria 2237
110 Ga0265313_10042567 3300031595 Bacteria 2229
111 Ga0265314_10000284 3300031711 Bacteria 73660
112 Ga0265314_10054272 3300031711 Bacteria 2774
113 Ga0265342_10035821 3300031712 Bacteria 3034
114 Ga0307416_100069988 3300032002 Bacteria 2907
115 Ga0373954_0030002 3300035118 Bacteria 2507
116 Ga0373956_0019262 3300035119 Bacteria 2893
117 Ga0373956_0025256 3300035119 Bacteria 2566
118 Ga0373955_0113003 3300035172 Bacteria 1572
119 Ga0373935_0012083 3300035692 Bacteria 5191
120 Ga0373927_0004978 3300035695 Bacteria 9208
121 Ga0373947_0025660 3300035725 Bacteria 3437
122 Ga0373937_0008534 3300036401 Bacteria 8901
123 Ga0373937_0252714 3300036401 Bacteria 1662
124 Ga0373925_0005206 3300037068 Bacteria 9723
125 Ga0373925_0144013 3300037068 Bacteria 1867
126 Ga0373925_0183899 3300037068 Bacteria 1656
127 Ga0395900_0151367 3300037418 Bacteria 2370
128 Ga0395905_0023836 3300037471 Bacteria 5778
129 Ga0451577_0000438 3300042876 Bacteria 73841
130 Ga0451577_0130878 3300042876 Unclassified 2251
131 Ga0453684_0004614 3300044712 Bacteria 28688
132 Ga0453684_0011217 3300044712 Bacteria 15085
133 Ga0451576_0014815 3300045051 Bacteria 8667
134 Ga0451576_0101260 3300045051 Bacteria 2996
135 Ga0451576_0108999 3300045051 Bacteria 2881
136 Ga0451576_0126409 3300045051 Bacteria 2664
137 Ga0451576_0146803 3300045051 Bacteria 2459
138 Ga0451576_0264676 3300045051 Bacteria 1797
139 Ga0451576_0333713 3300045051 Bacteria 1587
140 Ga0451576_0523941 3300045051 Bacteria 1245
141 Ga0495592_0000101 3300046454 Bacteria 75856
142 Ga0495629_0027725 3300046459 Bacteria 4022
143 Ga0495629_0150740 3300046459 Bacteria 1616
144 Ga0495641_0055199 3300046461 Bacteria 1804
145 Ga0495582_0010318 3300046473 Bacteria 5140
146 Ga0495639_0056145 3300046475 Bacteria 1797
147 Ga0495662_0019609 3300046476 Bacteria 3272
148 Ga0495662_0025653 3300046476 Bacteria 2846
149 Ga0495618_0003223 3300046514 Bacteria 10223
150 Ga0495618_0010988 3300046514 Bacteria 5485
151 Ga0495628_0003986 3300046516 Bacteria 13155
152 Ga0495630_0000136 3300046517 Bacteria 57957
153 Ga0495630_0001827 3300046517 Bacteria 14852
154 Ga0495630_0054811 3300046517 Bacteria 2987
155 Ga0495666_0059600 3300046526 Bacteria 1825
156 Ga0495666_0072558 3300046526 Unclassified 1634
157 Ga0495640_0024279 3300046533 Bacteria 4412
158 Ga0495640_0066125 3300046533 Bacteria 2439
159 Ga0495586_0000018 3300046535 Bacteria 112658
160 Ga0495586_0001038 3300046535 Bacteria 15691
161 Ga0495586_0003876 3300046535 Bacteria 8011
162 Ga0495645_0045687 3300046543 Bacteria 3196
163 Ga0495645_0103800 3300046543 Unclassified 2019
164 Ga0495634_0007211 3300046642 Bacteria 8380
165 Ga0495635_0038675 3300046663 Bacteria 3302
166 Ga0495599_0015275 3300046678 Bacteria 4763
167 Ga0495599_0111384 3300046678 Unclassified 1705
168 Ga0495647_0039178 3300046681 Bacteria 1795
169 Ga0495658_0006142 3300046683 Bacteria 5893
170 Ga0495613_0094288 3300046689 Bacteria 2166
171 Ga0495613_0108641 3300046689 Bacteria 2000
172 Ga0495624_0136179 3300046690 Bacteria 1505
173 Ga0495604_0172764 3300047317 Bacteria 1518
174 Ga0495674_0026630 3300047319 Bacteria 5291
175 Ga0495674_0034815 3300047319 Bacteria 4550
176 Ga0495674_0103519 3300047319 Bacteria 2420
177 Ga0495676_0002387 3300047321 Bacteria 16673
178 Ga0495680_0034312 3300047322 Bacteria 4099
179 Ga0495684_0068610 3300047471 Bacteria 2696
180 Ga0501034_0037646 3300049571 Bacteria 4899
181 Ga0501034_0361638 3300049571 Bacteria 1378
182 Ga0501034_0410745 3300049571 Bacteria 1276
183 nmdc:mga09592_309522_c1 3300050508 Unclassified 1369
184 nmdc:mga08y16_106465_c1 3300050511 Bacteria 2919
185 nmdc:mga08y16_134736_c1 3300050511 Bacteria 2567
186 nmdc:mga0n895_180181_c1 3300050512 Bacteria 2144
187 Ga0265334_10011430
188 Ga0065712_10068308
189 Ga0065707_10104004
190 Ga0070690_100218765
191 Ga0070670_100195454
192 Ga0070689_100002690
193 Ga0070689_100017498
194 Ga0070689_100110049
195 Ga0070689_100171089
196 Ga0070688_100069933
197 Ga0070688_100136144
198 Ga0070714_100034260
199 Ga0070713_100184462
200 Ga0070713_100204420
201 Ga0070713_100284542
202 Ga0070713_100288664
203 Ga0070713_100343608
204 Ga0070701_10068232
205 Ga0070708_100086151
206 Ga0070681_10205510
207 Ga0070704_100163469
208 Ga0068855_100038591
209 Ga0068857_100017917
210 Ga0068857_100140263
211 Ga0068856_100000155
212 Ga0068856_100047372
213 Ga0070702_100070261
214 Ga0068859_100451953
215 Ga0068864_100364278
216 Ga0068863_100073311
217 Ga0068863_100108512
218 Ga0068871_100013375
219 Ga0075428_100000173
220 Ga0075431_100469981
221 Ga0075434_100090015
222 Ga0075436_100081911
223 Ga0097620_100451921
224 Ga0105240_10017556
225 Ga0105240_10052357
226 Ga0111539_10107920
227 Ga0111539_10122177
228 Ga0111539_10130632
229 Ga0114129_10538396
230 Ga0105248_10107990
231 Ga0105238_10001680
232 Ga0105238_10140215
233 Ga0157374_10462387
234 Ga0157378_10242459
235 Ga0157375_10000027
236 Ga0163163_10000260
237 Ga0157376_10076031
238 Ga0207707_10235522
239 Ga0207707_10335560
240 Ga0207695_10013523
241 Ga0207695_10084814
242 Ga0207694_10005280
243 Ga0207650_10161631
244 Ga0207700_10158814
245 Ga0207700_10200377
246 Ga0207700_10305016
247 Ga0207664_10027456
248 Ga0207670_10001142
249 Ga0207670_10123605
250 Ga0207667_10058118
251 Ga0207667_10069855
252 Ga0207639_10086182
253 Ga0207702_10000647
254 Ga0207702_10016883
255 Ga0207641_10230684
256 Ga0207676_10133449
257 Ga0207674_10007713
258 Ga0207674_10198799
259 Ga0207428_10095414
260 Ga0265337_1003928
261 Ga0265337_1009283
262 Ga0265326_10026634
263 Ga0265319_1000001
264 Ga0265323_10000055
265 Ga0265336_10003294
266 Ga0265338_10000030
267 Ga0265338_10000062
268 Ga0265338_10000312
269 Ga0265338_10000660
270 Ga0265338_10004087
271 Ga0265338_10004362
272 Ga0265338_10006868
273 Ga0265338_10007229
274 Ga0265338_10009113
275 Ga0265338_10028862
276 Ga0265338_10047198
277 Ga0265338_10049010
278 Ga0265338_10100687
279 Ga0265324_10000888
280 Ga0265324_10010415
281 Ga0265324_10011159
282 Ga0265324_10028913
283 Ga0265324_10061880
284 Ga0265320_10002094
285 Ga0265320_10004873
286 Ga0265320_10015459
287 Ga0265320_10026022
288 Ga0265325_10055872
289 Ga0265329_10001850
290 Ga0265340_10011980
291 Ga0265339_10021999
292 Ga0265339_10047975
293 Ga0265316_10054430
294 Ga0307408_100117299
295 Ga0265313_10042339
296 Ga0265313_10042567
297 Ga0265314_10000284
298 Ga0265314_10054272
299 Ga0265342_10035821
300 Ga0307416_100069988
301 Ga0373954_0030002
302 Ga0373956_0019262
303 Ga0373956_0025256
304 Ga0373955_0113003
305 Ga0373935_0012083
306 Ga0373927_0004978
307 Ga0373947_0025660
308 Ga0373937_0008534
309 Ga0373937_0252714
310 Ga0373925_0005206
311 Ga0373925_0144013
312 Ga0373925_0183899
313 Ga0395900_0151367
314 Ga0395905_0023836
315 Ga0451577_0000438
316 Ga0451577_0130878
317 Ga0453684_0004614
318 Ga0453684_0011217
319 Ga0451576_0014815
320 Ga0451576_0101260
321 Ga0451576_0108999
322 Ga0451576_0126409
323 Ga0451576_0146803
324 Ga0451576_0264676
325 Ga0451576_0333713
326 Ga0451576_0523941
327 Ga0495592_0000101
328 Ga0495629_0027725
329 Ga0495629_0150740
330 Ga0495641_0055199
331 Ga0495582_0010318
332 Ga0495639_0056145
333 Ga0495662_0019609
334 Ga0495662_0025653
335 Ga0495618_0003223
336 Ga0495618_0010988
337 Ga0495628_0003986
338 Ga0495630_0000136
339 Ga0495630_0001827
340 Ga0495630_0054811
341 Ga0495666_0059600
342 Ga0495666_0072558
343 Ga0495640_0024279
344 Ga0495640_0066125
345 Ga0495586_0000018
346 Ga0495586_0001038
347 Ga0495586_0003876
348 Ga0495645_0045687
349 Ga0495645_0103800
350 Ga0495634_0007211
351 Ga0495635_0038675
352 Ga0495599_0015275
353 Ga0495599_0111384
354 Ga0495647_0039178
355 Ga0495658_0006142
356 Ga0495613_0094288
357 Ga0495613_0108641
358 Ga0495624_0136179
359 Ga0495604_0172764
360 Ga0495674_0026630
361 Ga0495674_0034815
362 Ga0495674_0103519
363 Ga0495676_0002387
364 Ga0495680_0034312
365 Ga0495684_0068610
366 Ga0501034_0037646
367 Ga0501034_0361638
368 Ga0501034_0410745
369 nmdc:mga09592_309522_c1
370 nmdc:mga08y16_106465_c1
371 nmdc:mga08y16_134736_c1
372 nmdc:mga0n895_180181_c1

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21016

RlmN_N

Ribosomal RNA large subunit methyltransferase N-terminal domain

51

110

0.92

PF04055

Radical_SAM

Radical SAM superfamily

217

351

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9254 1 337
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9125 1 337
3rfa-assembly2.cif.gz_A x-ray structure of rlmn from escherichia coli in complex with s-adenosylmethionine 0.8977 1 326
4pl1-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli with s-adenosylmethionine 0.8973 1 326
4pl2-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli 0.8957 1 332
ID Description Score Start End Superfamily
af_A0A1D6FPJ6_15_105_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.959 181 260 3.20.20.70
af_Q2FZ66_80_363_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9448 63 335 3.20.20.70
af_P9WH15_79_363_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9252 65 335 3.20.20.70
4pl1B02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9247 64 332 3.20.20.70
6fz6B02 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9116 64 337 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A3L7Q686-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9562 183 335 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A3A0V329-F1-model_v4 Radical SAM protein 0.9549 147 302 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A349UMM5-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9511 215 326 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A3B1E2Y4-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase @ tRNA (Adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.9495 1 335 GO:0002935
GO:0005737
GO:0030488
GO:0046872
GO:0051539
GO:0070040
GO:0070475
AF-A0A067ZEB4-F1-model_v4 RlmN 0.9481 128 306 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475

Map