F284915

General Info

Members Datasets Scaffolds Average Seq Length
185 138 370 439

Family's Representative Sequence

Representative Sequence 3300046674|Ga0495588_0000009|Ga0495588_0000009_823849_825363
Length 504
Sequence VHCQRSVFLLLIPYASAYFILNVVIAIDRSAMFMLRRATFRAVPKFTAVPRRSLGSVSAIDSAIFRTLFGTDEIRKVFDDKAYLNRCVDAETALARAQSRCNVIPSHIGEVVTSKAKGAELDFDRLRKETEIVGYPILPLVRQLSTLVGEEAGRYVHWGATTQDIMDLASMLQMKEGLEIVEKTLRSVIKNLEILSQKHRDTPMAGRTHLQHALPITFGHKTAVWLSGFQRHLERLEQLKKRALMVQFGGAAGSLASLGSGDDGIRVRKEMAKDLGLTDPPITWHVARDGVAEITNYLALVGGSLGKLALDIIIMSSNELSEVSEPFVPHRGASSTMPQKRNPISSEVILAASKILRSNAGLVLDGMVSDFERASGPWHLEWVAVPESFVIAVGALFQADFALSGLVVNQKQMLDNLYSTRGLIVAEAVMMGLAPHVGRQKAHDIVYEACKESIENDTSLLEALQTRSEVTGKISHDALSSLCDAKNYLGSCGLMVDEVLAASK

Samples

Sample ID Description Type Environment
1 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
8 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
23 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
24 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
25 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
32 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
35 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
36 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
37 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
38 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
39 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
45 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
48 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
49 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
63 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
64 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
67 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
70 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
71 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
72 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
73 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
74 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
78 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
82 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
85 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
86 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
87 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
88 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
89 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
90 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
91 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
92 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
93 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
94 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
95 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
96 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
97 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
98 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
99 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
103 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
110 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
111 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
117 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
118 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
119 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
120 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
121 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
122 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
123 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
124 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
125 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
126 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
127 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
128 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
129 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
130 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
131 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
132 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
133 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
134 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
135 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
136 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
137 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
138 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.3
Metatranscriptomes 0.54
Isolates 2.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.65
Nodule 0
Rhizoplane 10.81
Rhizosphere 74.59
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495588_0000009 3300046674 Eukaryota 911882
2 JGI25406J46586_10000208 3300003203 Bacteria 26104
3 Ga0065714_10064855 3300005288 Bacteria 16977
4 Ga0065712_10021570 3300005290 Bacteria 1774
5 Ga0070680_100029994 3300005336 Bacteria 4367
6 Ga0070689_100002106 3300005340 Bacteria 12925
7 Ga0070671_100117134 3300005355 Bacteria 2240
8 Ga0070703_10009224 3300005406 Bacteria 2784
9 Ga0070709_10003361 3300005434 Bacteria 8601
10 Ga0070714_100008124 3300005435 Bacteria 8180
11 Ga0070714_100015905 3300005435 Bacteria 6064
12 Ga0070714_100080745 3300005435 Bacteria 2830
13 Ga0070713_100082717 3300005436 Bacteria 2742
14 Ga0070710_10005213 3300005437 Bacteria 6160
15 Ga0070701_10021102 3300005438 Bacteria 3103
16 Ga0070711_100002104 3300005439 Bacteria 11259
17 Ga0070705_100000754 3300005440 Bacteria 18371
18 Ga0070694_100004498 3300005444 Bacteria 8383
19 Ga0070708_100028488 3300005445 Bacteria 4807
20 Ga0070706_100256101 3300005467 Bacteria 1634
21 Ga0070698_100003260 3300005471 Bacteria 17827
22 Ga0070699_100000158 3300005518 Bacteria 64029
23 Ga0070697_100179377 3300005536 Bacteria 1795
24 Ga0070695_100003112 3300005545 Bacteria 9656
25 Ga0070696_100001057 3300005546 Bacteria 17818
26 Ga0070704_100022808 3300005549 Bacteria 4077
27 Ga0070704_100169245 3300005549 Bacteria 1736
28 Ga0068857_100002130 3300005577 Bacteria 16091
29 Ga0068859_100018886 3300005617 Bacteria 6926
30 Ga0068864_100012022 3300005618 Bacteria 7148
31 Ga0068858_100194006 3300005842 Bacteria 1919
32 Ga0068860_100001675 3300005843 Bacteria 23662
33 Ga0068862_100002204 3300005844 Bacteria 17465
34 Ga0081540_1012748 3300005983 Bacteria 5506
35 Ga0081539_10000322 3300005985 Bacteria 106875
36 Ga0070717_10000240 3300006028 Bacteria 37664
37 Ga0075365_10018853 3300006038 Bacteria 4249
38 Ga0075368_10020440 3300006042 Bacteria 2508
39 Ga0075364_10000230 3300006051 Bacteria 26475
40 Ga0075364_10003639 3300006051 Bacteria 8793
41 Ga0075367_10010285 3300006178 Bacteria 4911
42 Ga0075367_10042753 3300006178 Bacteria 2652
43 Ga0075428_100014028 3300006844 Bacteria 8917
44 Ga0075430_100100526 3300006846 Bacteria 2415
45 Ga0075431_100001890 3300006847 Bacteria 19851
46 Ga0075431_100026132 3300006847 Bacteria 5988
47 Ga0075431_100112153 3300006847 Bacteria 2814
48 Ga0075431_100122394 3300006847 Bacteria 2684
49 Ga0075429_100105094 3300006880 Bacteria 2466
50 Ga0097620_100018886 3300006931 Bacteria 6926
51 Ga0111539_10021670 3300009094 Bacteria 7904
52 Ga0111539_10070228 3300009094 Bacteria 4134
53 Ga0111539_10237856 3300009094 Bacteria 2120
54 Ga0105247_10063517 3300009101 Bacteria 2292
55 Ga0114129_10078948 3300009147 Bacteria 4577
56 Ga0157375_10195142 3300013308 Bacteria 2180
57 Ga0157379_10066805 3300014968 Bacteria 3215
58 Ga0213875_10000305 3300021388 Bacteria 46895
59 Ga0213875_10001457 3300021388 Bacteria 15323
60 Ga0207653_10000634 3300025885 Bacteria 12086
61 Ga0207692_10121848 3300025898 Bacteria 1461
62 Ga0207707_10138860 3300025912 Bacteria 2125
63 Ga0207693_10002453 3300025915 Bacteria 16107
64 Ga0207693_10016485 3300025915 Bacteria 5904
65 Ga0207663_10014983 3300025916 Bacteria 4264
66 Ga0207663_10029187 3300025916 Bacteria 3236
67 Ga0207660_10023651 3300025917 Bacteria 4152
68 Ga0207664_10006892 3300025929 Bacteria 7855
69 Ga0207664_10038628 3300025929 Bacteria 3703
70 Ga0207670_10002288 3300025936 Bacteria 10034
71 Ga0207678_10004527 3300026067 Bacteria 12498
72 Ga0207708_10015489 3300026075 Bacteria 5718
73 Ga0207674_10002164 3300026116 Bacteria 24857
74 Ga0207675_100070703 3300026118 Bacteria 3262
75 Ga0207675_100107250 3300026118 Bacteria 2634
76 Ga0207675_100109664 3300026118 Bacteria 2604
77 Ga0207683_10118980 3300026121 Bacteria 2370
78 Ga0209813_10000356 3300027866 Bacteria 11659
79 Ga0207428_10074050 3300027907 Bacteria 2671
80 Ga0207428_10081111 3300027907 Bacteria 2534
81 Ga0268265_10002562 3300028380 Bacteria 13590
82 Ga0268265_10065583 3300028380 Bacteria 2803
83 Ga0268265_10216234 3300028380 Bacteria 1674
84 Ga0268264_10107866 3300028381 Bacteria 2433
85 Ga0307513_10139545 3300031456 Bacteria 2353
86 Ga0307408_100000200 3300031548 Bacteria 65177
87 Ga0307414_10049974 3300032004 Bacteria 2894
88 Ga0373953_0004983 3300035117 Bacteria 4278
89 Ga0373954_0005278 3300035118 Bacteria 5582
90 Ga0373957_0005796 3300035120 Bacteria 3854
91 Ga0373955_0065506 3300035172 Bacteria 2017
92 Ga0373927_0125157 3300035695 Bacteria 1678
93 Ga0373937_0056192 3300036401 Bacteria 3614
94 Ga0395905_0015267 3300037471 Bacteria 7303
95 Ga0436364_0207585 3300037853 Bacteria 136246
96 Ga0436364_0388843 3300037853 Bacteria 13143
97 Ga0436364_0663275 3300037853 Bacteria 97909
98 Ga0436364_0696854 3300037853 Bacteria 2094
99 Ga0436364_1443407 3300037853 Bacteria 4614
100 Ga0436365_1217887 3300039437 Bacteria 21993
101 Ga0436360_0368985 3300039438 Bacteria 8094
102 Ga0436360_0984808 3300039438 Bacteria 1340
103 Ga0436361_0221836 3300039447 Bacteria 4079
104 Ga0436361_0839822 3300039447 Bacteria 2603
105 Ga0436362_0460380 3300039453 Bacteria 6764
106 Ga0466972_0000308 3300044658 Bacteria 28512
107 Ga0466972_0068173 3300044658 Bacteria 1699
108 Ga0466966_0007151 3300044684 Bacteria 7397
109 Ga0466959_0093112 3300045049 Bacteria 2163
110 Ga0495603_0034706 3300046455 Bacteria 3032
111 Ga0495591_003760 3300046458 Bacteria 7674
112 Ga0495582_0043371 3300046473 Bacteria 2478
113 Ga0495662_0035903 3300046476 Bacteria 2393
114 Ga0495585_0004092 3300046492 Bacteria 9580
115 Ga0495610_0008408 3300046512 Bacteria 6690
116 Ga0495643_0001822 3300046522 Bacteria 18142
117 Ga0495597_0000157 3300046542 Bacteria 60125
118 Ga0495597_0018337 3300046542 Bacteria 3285
119 Ga0495667_0019303 3300046559 Bacteria 4600
120 Ga0495661_0000123 3300046665 Bacteria 93482
121 Ga0495658_0095378 3300046683 Bacteria 1768
122 Ga0495649_0022881 3300046694 Bacteria 3494
123 Ga0495600_0115895 3300046809 Bacteria 1744
124 Ga0495680_0053821 3300047322 Bacteria 3129
125 Ga0495681_0001342 3300047470 Bacteria 18583
126 Ga0496102_0089202 3300048905 Bacteria 2852
127 Ga0496104_0000275 3300048907 Bacteria 45789
128 Ga0496104_0020995 3300048907 Bacteria 5992
129 Ga0496105_0021505 3300048908 Bacteria 5220
130 Ga0496105_0128166 3300048908 Bacteria 2092
131 Ga0496106_0002566 3300048909 Bacteria 13514
132 Ga0496106_0101844 3300048909 Bacteria 2227
133 Ga0496108_0002945 3300048911 Bacteria 13690
134 Ga0496108_0100486 3300048911 Bacteria 2467
135 Ga0496108_0197399 3300048911 Bacteria 1746
136 Ga0496109_0025067 3300048912 Bacteria 5310
137 Ga0496110_0007801 3300048913 Bacteria 8576
138 Ga0496110_0112809 3300048913 Bacteria 2444
139 Ga0496111_0010562 3300048914 Bacteria 6202
140 Ga0496112_0001330 3300048915 Bacteria 18777
141 Ga0496112_0061355 3300048915 Bacteria 3706
142 Ga0496112_0143368 3300048915 Bacteria 2358
143 Ga0496113_0003154 3300048916 Bacteria 9813
144 Ga0496115_0059965 3300048918 Bacteria 3065
145 Ga0496115_0108826 3300048918 Bacteria 2275
146 Ga0496120_0022322 3300048923 Eukaryota 3983
147 Ga0501316_001834 3300049532 Bacteria 1885
148 Ga0501033_0045727 3300049570 Bacteria 3257
149 Ga0501039_0175739 3300049575 Bacteria 1684
150 Ga0501039_0215498 3300049575 Bacteria 1510
151 Ga0501040_0180818 3300049576 Bacteria 1495
152 Ga0501041_0034523 3300049577 Bacteria 3063
153 Ga0501075_0144064 3300049591 Bacteria 1816
154 Ga0501075_0207728 3300049591 Bacteria 1493
155 Ga0501076_0105056 3300049592 Bacteria 2279
156 Ga0501077_0053072 3300049593 Bacteria 2574
157 Ga0501081_0018965 3300049743 Bacteria 4574
158 Ga0501045_0042845 3300049824 Bacteria 3295
159 Ga0501045_0143173 3300049824 Bacteria 1778
160 nmdc:mga03n38_48075_c1 3300050490 Bacteria 1891
161 nmdc:mga00v17_37051_c1 3300050491 Bacteria 2910
162 nmdc:mga06z11_408_c1 3300050494 Bacteria 16144
163 nmdc:mga06z11_66184_c1 3300050494 Bacteria 1899
164 nmdc:mga04h51_2437_c1 3300050495 Bacteria 4416
165 nmdc:mga04h51_3645_c1 3300050495 Bacteria 3764
166 nmdc:mga09592_71990_c1 3300050508 Bacteria 2935
167 nmdc:mga0qj67_18367_c1 3300050509 Bacteria 5329
168 nmdc:mga06r32_25498_c1 3300050510 Bacteria 5501
169 nmdc:mga06r32_28292_c1 3300050510 Bacteria 5243
170 nmdc:mga06r32_293724_c1 3300050510 Bacteria 1612
171 nmdc:mga06r32_41984_c1 3300050510 Bacteria 4347
172 nmdc:mga06r32_5374_c1 3300050510 Bacteria 11525
173 nmdc:mga08y16_10279_c1 3300050511 Bacteria 9822
174 nmdc:mga08y16_109767_c1 3300050511 Bacteria 2872
175 nmdc:mga08y16_39978_c1 3300050511 Bacteria 4919
176 Ga0495619_0006079 3300053085 Bacteria 7649
177 Ga0500641_0001280 3300053096 Bacteria 8930
178 Ga0500607_000079 3300053121 Eukaryota 71174
179 Ga0500568_0016441 3300053139 Bacteria 3290
180 Ga0501082_0120432 3300060353 Bacteria 2275
181 Ga0530510_0051102 3300061734 Bacteria 2986
182 2676483315 2675903059 Bacteria 8644972
183 2881416399 2881412998 Bacteria 6492157
184 2887378748 2887375801 Bacteria 5334027
185 2894775017 2894772417 Bacteria 5305674
186 Ga0495588_0000009
187 JGI25406J46586_10000208
188 Ga0065714_10064855
189 Ga0065712_10021570
190 Ga0070680_100029994
191 Ga0070689_100002106
192 Ga0070671_100117134
193 Ga0070703_10009224
194 Ga0070709_10003361
195 Ga0070714_100008124
196 Ga0070714_100015905
197 Ga0070714_100080745
198 Ga0070713_100082717
199 Ga0070710_10005213
200 Ga0070701_10021102
201 Ga0070711_100002104
202 Ga0070705_100000754
203 Ga0070694_100004498
204 Ga0070708_100028488
205 Ga0070706_100256101
206 Ga0070698_100003260
207 Ga0070699_100000158
208 Ga0070697_100179377
209 Ga0070695_100003112
210 Ga0070696_100001057
211 Ga0070704_100022808
212 Ga0070704_100169245
213 Ga0068857_100002130
214 Ga0068859_100018886
215 Ga0068864_100012022
216 Ga0068858_100194006
217 Ga0068860_100001675
218 Ga0068862_100002204
219 Ga0081540_1012748
220 Ga0081539_10000322
221 Ga0070717_10000240
222 Ga0075365_10018853
223 Ga0075368_10020440
224 Ga0075364_10000230
225 Ga0075364_10003639
226 Ga0075367_10010285
227 Ga0075367_10042753
228 Ga0075428_100014028
229 Ga0075430_100100526
230 Ga0075431_100001890
231 Ga0075431_100026132
232 Ga0075431_100112153
233 Ga0075431_100122394
234 Ga0075429_100105094
235 Ga0097620_100018886
236 Ga0111539_10021670
237 Ga0111539_10070228
238 Ga0111539_10237856
239 Ga0105247_10063517
240 Ga0114129_10078948
241 Ga0157375_10195142
242 Ga0157379_10066805
243 Ga0213875_10000305
244 Ga0213875_10001457
245 Ga0207653_10000634
246 Ga0207692_10121848
247 Ga0207707_10138860
248 Ga0207693_10002453
249 Ga0207693_10016485
250 Ga0207663_10014983
251 Ga0207663_10029187
252 Ga0207660_10023651
253 Ga0207664_10006892
254 Ga0207664_10038628
255 Ga0207670_10002288
256 Ga0207678_10004527
257 Ga0207708_10015489
258 Ga0207674_10002164
259 Ga0207675_100070703
260 Ga0207675_100107250
261 Ga0207675_100109664
262 Ga0207683_10118980
263 Ga0209813_10000356
264 Ga0207428_10074050
265 Ga0207428_10081111
266 Ga0268265_10002562
267 Ga0268265_10065583
268 Ga0268265_10216234
269 Ga0268264_10107866
270 Ga0307513_10139545
271 Ga0307408_100000200
272 Ga0307414_10049974
273 Ga0373953_0004983
274 Ga0373954_0005278
275 Ga0373957_0005796
276 Ga0373955_0065506
277 Ga0373927_0125157
278 Ga0373937_0056192
279 Ga0395905_0015267
280 Ga0436364_0207585
281 Ga0436364_0388843
282 Ga0436364_0663275
283 Ga0436364_0696854
284 Ga0436364_1443407
285 Ga0436365_1217887
286 Ga0436360_0368985
287 Ga0436360_0984808
288 Ga0436361_0221836
289 Ga0436361_0839822
290 Ga0436362_0460380
291 Ga0466972_0000308
292 Ga0466972_0068173
293 Ga0466966_0007151
294 Ga0466959_0093112
295 Ga0495603_0034706
296 Ga0495591_003760
297 Ga0495582_0043371
298 Ga0495662_0035903
299 Ga0495585_0004092
300 Ga0495610_0008408
301 Ga0495643_0001822
302 Ga0495597_0000157
303 Ga0495597_0018337
304 Ga0495667_0019303
305 Ga0495661_0000123
306 Ga0495658_0095378
307 Ga0495649_0022881
308 Ga0495600_0115895
309 Ga0495680_0053821
310 Ga0495681_0001342
311 Ga0496102_0089202
312 Ga0496104_0000275
313 Ga0496104_0020995
314 Ga0496105_0021505
315 Ga0496105_0128166
316 Ga0496106_0002566
317 Ga0496106_0101844
318 Ga0496108_0002945
319 Ga0496108_0100486
320 Ga0496108_0197399
321 Ga0496109_0025067
322 Ga0496110_0007801
323 Ga0496110_0112809
324 Ga0496111_0010562
325 Ga0496112_0001330
326 Ga0496112_0061355
327 Ga0496112_0143368
328 Ga0496113_0003154
329 Ga0496115_0059965
330 Ga0496115_0108826
331 Ga0496120_0022322
332 Ga0501316_001834
333 Ga0501033_0045727
334 Ga0501039_0175739
335 Ga0501039_0215498
336 Ga0501040_0180818
337 Ga0501041_0034523
338 Ga0501075_0144064
339 Ga0501075_0207728
340 Ga0501076_0105056
341 Ga0501077_0053072
342 Ga0501081_0018965
343 Ga0501045_0042845
344 Ga0501045_0143173
345 nmdc:mga03n38_48075_c1
346 nmdc:mga00v17_37051_c1
347 nmdc:mga06z11_408_c1
348 nmdc:mga06z11_66184_c1
349 nmdc:mga04h51_2437_c1
350 nmdc:mga04h51_3645_c1
351 nmdc:mga09592_71990_c1
352 nmdc:mga0qj67_18367_c1
353 nmdc:mga06r32_25498_c1
354 nmdc:mga06r32_28292_c1
355 nmdc:mga06r32_293724_c1
356 nmdc:mga06r32_41984_c1
357 nmdc:mga06r32_5374_c1
358 nmdc:mga08y16_10279_c1
359 nmdc:mga08y16_109767_c1
360 nmdc:mga08y16_39978_c1
361 Ga0495619_0006079
362 Ga0500641_0001280
363 Ga0500607_000079
364 Ga0500568_0016441
365 Ga0501082_0120432
366 Ga0530510_0051102
367 2676483315
368 2881416399
369 2887378748
370 2894775017

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10397

ADSL_C

Adenylosuccinate lyase C-terminus

422

499

0.97

PF00206

Lyase_1

Lyase

67

356

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2fen-assembly2.cif.gz_E 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2 0.9293 2 327
2fen-assembly1.cif.gz_D 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2 0.9167 2 327
2fen-assembly1.cif.gz_A 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2 0.9145 2 327
2fel-assembly3.cif.gz_L 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2 0.9118 2 327
2fen-assembly3.cif.gz_J 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium radiobacter s2 0.9099 2 327
ID Description Score Start End Superfamily
af_O42889_1_362_1.20.200.10 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9686 5 327 1.20.200.10
1re5B01 Mainly Alpha;Orthogonal Bundle;Fumarase C; Chain B, domain 1;Fumarase/aspartase (N-terminal domain) 0.9515 1 97 1.10.275.10
1q5nA02 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.9493 98 327 1.20.200.10
3c8tA02 Mainly Alpha;Up-down Bundle;Fumarase C; Chain A, domain 2;Fumarase/aspartase (Central domain) 0.947 98 327 1.20.200.10
5xnzA01 Mainly Alpha;Orthogonal Bundle;Fumarase C; Chain B, domain 1;Fumarase/aspartase (N-terminal domain) 0.9412 12 97 1.10.275.10
ID Description Score Start End GO Terms
AF-A0A1G5YQT2-F1-model_v4 deleted 0.9698 1 234
AF-A0A3R9WXM4-F1-model_v4 deleted 0.9689 2 245
AF-A0A7W1QTR0-F1-model_v4 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) 0.9645 1 292 GO:0019619
GO:0047472
AF-A0A3S4G9U7-F1-model_v4 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) 0.9641 1 218 GO:0016829
GO:0047472
AF-A0A7Y8KEZ7-F1-model_v4 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) 0.9629 1 216 GO:0016829
GO:0047472

Map