F282980

General Info

Members Datasets Scaffolds Average Seq Length
184 166 176 369

Family's Representative Sequence

Representative Sequence 3300041509|Ga0451843_0110219|Ga0451843_0110219_1369_2673
Length 434
Sequence LSGQQNLARDRELTGKITSCSARMAKEEPTEEAFMLLQPGQTGLRTSVYETWMVFRGIAADACIAAELGHKRLSMKKALITGVTGQDGSYLAEFLLSKGYEVHGIKRRSSLINTDRIDHLYQDPHVEGRRFVLHYGDMTDSSSLIRIIQQVQPDEIYNLAAQSHVAVSFEEPEYTANSDALGALRLLEAIRILGLEKKTRFYQASTSELYGLVQEIPQRETTPFYPRSPYAVAKLYAYWITVNYREAYGIYACNGILFNHESPVRGETFVTRKITRALARIKLGLQDRLYLGNLNASRDWGHARDYVIMQWMMLQQDQPEDFVIATGVQYSVRDFVDAAAKIIDMPIRWEGSDLEEKGYDSEGRCIVAVDPRYFRPTEVETLLGDATKAREKLGWTPEVTFAELVSEMMLEDLQAAKRDELVKQHGFTAYDRHE

Samples

Sample ID Description Type Environment
1 2615840624 Rhizobium aethiopicum HBR26 Isolate Nodule
2 2818991457 Xanthomonas translucens 569 Isolate Unclassified
3 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
4 2919130084 Xanthomonas sp. 1678 Isolate Rhizosphere
5 2929195423 Xanthomonas sp. R-73098 Hybrid assembly Isolate Unclassified
6 2936381700 Rhizobium chutanense C16 Isolate Unclassified
7 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
8 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
9 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
10 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
11 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
12 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
13 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
14 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
15 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
16 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
17 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
18 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
19 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
20 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
21 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
22 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
23 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
24 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
25 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
26 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
27 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
28 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
29 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
30 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
42 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
43 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
44 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
45 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
46 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
60 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
64 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
65 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
69 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
70 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
71 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
73 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
103 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
106 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
107 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
108 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
109 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
110 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
111 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
112 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
113 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
114 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
115 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
116 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
117 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
118 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
119 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
120 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
121 3300041492 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_2 MetaG Metagenome Unclassified
122 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
123 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
124 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
125 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
126 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
127 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
128 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
129 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
130 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
131 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
132 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
133 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
134 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
135 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
136 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
137 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
138 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
139 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
140 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
141 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
142 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
143 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
144 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
145 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
146 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
147 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
148 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
149 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
150 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
151 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
152 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
153 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
154 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
155 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
156 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
157 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
158 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
159 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
160 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
161 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
162 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
163 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
164 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
165 8018150411 Rhizobium straminoryzae SM12 Isolate Rhizosphere
166 8057798959 Pseudomonas piscis BW16M1 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.11
Metatranscriptomes 0.54
Isolates 4.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.67
Nodule 0.54
Rhizoplane 2.72
Rhizosphere 70.65
Stem 0
Stem Tuber 0
Unclassified 11.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10007916 3300001979 Bacteria 4284
2 JGI25162J39368_1000398 3300002737 Bacteria 36350
3 JGI25164J39214_1003700 3300002772 Bacteria 1879
4 Ga0055539_1000590 3300003752 Bacteria 10125
5 Ga0055533_1000293 3300003756 Bacteria 25431
6 Ga0055542_1000069 3300003762 Bacteria 148278
7 Ga0055526_1001672 3300003771 Bacteria 15553
8 Ga0055524_1028123 3300003775 Bacteria 1691
9 Ga0055528_1000322 3300003790 Bacteria 40297
10 Ga0058692_1000040 3300003856 Bacteria 132805
11 Ga0065712_10116179 3300005290 Bacteria 1740
12 Ga0070690_100069179 3300005330 Bacteria 2291
13 Ga0068869_100001205 3300005334 Bacteria 15205
14 Ga0070689_100088330 3300005340 Bacteria 2439
15 Ga0070668_100025441 3300005347 Bacteria 4487
16 Ga0070669_100001842 3300005353 Bacteria 15288
17 Ga0070669_100013320 3300005353 Bacteria 5846
18 Ga0070675_100003633 3300005354 Bacteria 11728
19 Ga0070674_100002357 3300005356 Bacteria 10422
20 Ga0070688_100013528 3300005365 Bacteria 4605
21 Ga0070667_100003070 3300005367 Bacteria 14351
22 Ga0070700_100000824 3300005441 Bacteria 15242
23 Ga0070678_100036830 3300005456 Bacteria 3428
24 Ga0070662_100006646 3300005457 Bacteria 7468
25 Ga0068867_100124859 3300005459 Bacteria 1993
26 Ga0068853_100108299 3300005539 Bacteria 2465
27 Ga0070672_100001113 3300005543 Bacteria 16417
28 Ga0068857_100237984 3300005577 Bacteria 1666
29 Ga0068852_100018573 3300005616 Bacteria 5480
30 Ga0068859_100069975 3300005617 Bacteria 3544
31 Ga0068864_100108055 3300005618 Bacteria 2475
32 Ga0068861_100005203 3300005719 Bacteria 8768
33 Ga0068861_100108766 3300005719 Bacteria 2218
34 Ga0068863_100008845 3300005841 Bacteria 9833
35 Ga0068863_100084141 3300005841 Bacteria 3015
36 Ga0068858_100002700 3300005842 Bacteria 17882
37 Ga0068860_100008093 3300005843 Bacteria 10470
38 Ga0075366_10002577 3300006195 Bacteria 9315
39 Ga0075370_10016550 3300006353 Bacteria 3969
40 Ga0075431_100086675 3300006847 Bacteria 3231
41 Ga0075429_100076780 3300006880 Bacteria 2910
42 Ga0075436_100002792 3300006914 Bacteria 11963
43 Ga0097620_100069973 3300006931 Bacteria 3544
44 Ga0111539_10008682 3300009094 Bacteria 12899
45 Ga0105245_10016144 3300009098 Bacteria 6507
46 Ga0105247_10181444 3300009101 Bacteria 1405
47 Ga0114129_10031992 3300009147 Bacteria 7436
48 Ga0105242_10004000 3300009176 Bacteria 11456
49 Ga0105249_10003753 3300009553 Bacteria 13111
50 Ga0105249_10005591 3300009553 Bacteria 10868
51 Ga0105249_10030230 3300009553 Bacteria 4896
52 Ga0157371_10000928 3300013102 Bacteria 32867
53 Ga0157370_10073893 3300013104 Bacteria 3216
54 Ga0157374_10002341 3300013296 Bacteria 16003
55 Ga0157374_10052575 3300013296 Bacteria 3795
56 Ga0163162_10004605 3300013306 Bacteria 13287
57 Ga0157375_10022569 3300013308 Bacteria 5794
58 Ga0157380_10007519 3300014326 Bacteria 7739
59 Ga0157376_10042449 3300014969 Bacteria 3727
60 Ga0182006_1005092 3300015261 Bacteria 6318
61 Ga0163161_10007620 3300017792 Bacteria 7488
62 Ga0209674_100354 3300025226 Bacteria 26166
63 Ga0207427_100372 3300025231 Bacteria 27308
64 Ga0209437_100113 3300025233 Bacteria 211240
65 Ga0209258_104179 3300025242 Bacteria 2823
66 Ga0209677_100379 3300025253 Bacteria 27214
67 Ga0209148_1000005 3300025254 Bacteria 1806504
68 Ga0209129_1006419 3300025258 Bacteria 3801
69 Ga0209233_1000955 3300025261 Bacteria 12500
70 Ga0209673_1000728 3300025273 Bacteria 45616
71 Ga0209564_1001105 3300025295 Bacteria 31907
72 Ga0209758_1001625 3300025297 Bacteria 25604
73 Ga0209256_1000800 3300025299 Bacteria 40330
74 Ga0207697_10009728 3300025315 Bacteria 4140
75 Ga0207642_10002417 3300025899 Bacteria 5821
76 Ga0207680_10034745 3300025903 Bacteria 2887
77 Ga0207645_10005005 3300025907 Bacteria 9708
78 Ga0207662_10011949 3300025918 Bacteria 4829
79 Ga0207681_10000583 3300025923 Bacteria 24864
80 Ga0207681_10009734 3300025923 Bacteria 5883
81 Ga0207650_10018309 3300025925 Bacteria 4914
82 Ga0207659_10103755 3300025926 Bacteria 2149
83 Ga0207659_10242438 3300025926 Bacteria 1459
84 Ga0207700_10053894 3300025928 Bacteria 3016
85 Ga0207644_10088009 3300025931 Bacteria 2309
86 Ga0207686_10013195 3300025934 Bacteria 4567
87 Ga0207709_10019939 3300025935 Bacteria 3778
88 Ga0207704_10007104 3300025938 Bacteria 5267
89 Ga0207691_10003412 3300025940 Bacteria 15442
90 Ga0207711_10010945 3300025941 Bacteria 7539
91 Ga0207689_10012289 3300025942 Bacteria 7326
92 Ga0207712_10012267 3300025961 Bacteria 5474
93 Ga0207668_10006839 3300025972 Bacteria 6762
94 Ga0207658_10017850 3300025986 Bacteria 4889
95 Ga0207703_10002118 3300026035 Bacteria 17481
96 Ga0207639_10115965 3300026041 Bacteria 2192
97 Ga0207708_10008506 3300026075 Bacteria 7597
98 Ga0207708_10019464 3300026075 Bacteria 5117
99 Ga0207641_10071007 3300026088 Bacteria 2993
100 Ga0207641_10104294 3300026088 Bacteria 2503
101 Ga0207648_10004537 3300026089 Bacteria 14235
102 Ga0207648_10056990 3300026089 Bacteria 3409
103 Ga0207676_10059412 3300026095 Bacteria 3019
104 Ga0207676_10406880 3300026095 Bacteria 1273
105 Ga0207674_10247019 3300026116 Bacteria 1731
106 Ga0207675_100003015 3300026118 Bacteria 16511
107 Ga0207683_10034058 3300026121 Bacteria 4426
108 Ga0209371_1000048 3300027312 Bacteria 281705
109 Ga0268265_10014269 3300028380 Bacteria 5413
110 Ga0268264_10001636 3300028381 Bacteria 20687
111 Ga0307515_10000011 3300028794 Bacteria 633903
112 Ga0268256_1000049 3300030500 Bacteria 307229
113 Ga0265327_10000529 3300031251 Bacteria 65835
114 Ga0307415_100035839 3300032126 Bacteria 3244
115 Ga0316592_1005640 3300033524 Bacteria 2383
116 Ga0373927_0069267 3300035695 Bacteria 2283
117 Ga0395900_0054619 3300037418 Bacteria 4112
118 Ga0395905_0001214 3300037471 Bacteria 32159
119 Ga0395905_0007832 3300037471 Bacteria 10585
120 Ga0395901_0001017 3300038443 Bacteria 30361
121 Ga0400490_26985 3300038726 Bacteria 10004
122 Ga0400485_21837 3300038735 Bacteria 2492
123 Ga0400488_51110 3300038741 Bacteria 17575
124 Ga0400486_21915 3300038742 Bacteria 3101
125 Ga0400489_32070 3300039093 Bacteria 8896
126 Ga0436361_1201302 3300039447 Bacteria 11640
127 Ga0451802_0532977 3300041460 Bacteria 1376
128 Ga0451835_0338844 3300041492 Bacteria 1871
129 Ga0451839_0973534 3300041496 Bacteria 4255
130 Ga0451841_0720592 3300041498 Bacteria 4982
131 Ga0451845_0060883 3300041501 Bacteria 4087
132 Ga0451849_0361191 3300041505 Bacteria 21647
133 Ga0451851_0739334 3300041507 Bacteria 3786
134 Ga0451843_0110219 3300041509 Bacteria 3942
135 Ga0451843_0756378 3300041509 Bacteria 1656
136 Ga0451853_1668313 3300041512 Bacteria 3282
137 Ga0439442_018835 3300042002 Bacteria 1428
138 Ga0439445_0021736 3300042004 Bacteria 1614
139 Ga0451577_0001505 3300042876 Bacteria 30794
140 Ga0466965_0003903 3300044683 Bacteria 6593
141 Ga0466966_0000811 3300044684 Bacteria 19901
142 Ga0466961_0010619 3300044693 Bacteria 5877
143 Ga0453684_0001815 3300044712 Bacteria 56298
144 Ga0453684_0082042 3300044712 Bacteria 4019
145 Ga0466959_0001157 3300045049 Bacteria 15891
146 Ga0466959_0011038 3300045049 Bacteria 6484
147 Ga0466959_0014408 3300045049 Bacteria 5743
148 Ga0451576_0000292 3300045051 Bacteria 122654
149 Ga0451576_0000560 3300045051 Bacteria 79638
150 Ga0466958_0087020 3300045836 Bacteria 1929
151 Ga0466967_0074337 3300045976 Bacteria 3052
152 Ga0495592_0075052 3300046454 Bacteria 2456
153 Ga0495606_0015986 3300046507 Bacteria 5748
154 Ga0495620_0003953 3300046515 Bacteria 8429
155 Ga0495628_0220182 3300046516 Bacteria 1425
156 Ga0495645_0084468 3300046543 Bacteria 2274
157 Ga0495625_0076161 3300046660 Bacteria 2346
158 Ga0495671_0062329 3300046692 Bacteria 1838
159 Ga0495672_0011690 3300047320 Bacteria 6177
160 Ga0496103_0129037 3300048906 Bacteria 1614
161 Ga0496108_0199687 3300048911 Bacteria 1735
162 Ga0496109_0032898 3300048912 Bacteria 4665
163 Ga0496112_0027227 3300048915 Bacteria 5512
164 Ga0496124_0064882 3300048927 Bacteria 3047
165 Ga0496125_0022093 3300048928 Bacteria 5915
166 Ga0501072_0024509 3300049588 Bacteria 4694
167 Ga0501234_000736 3300049707 Bacteria 5072
168 Ga0501079_0111482 3300049741 Bacteria 2126
169 Ga0501035_0107988 3300049822 Bacteria 2440
170 nmdc:mga0k408_1808_c1 3300050493 Bacteria 11476
171 nmdc:mga07m45_13227_c1 3300050496 Bacteria 4373
172 nmdc:mga06r32_67983_c1 3300050510 Bacteria 3441
173 nmdc:mga08x19_448_c1 3300050514 Bacteria 28248
174 Ga0500566_0000570 3300053094 Bacteria 20763
175 Ga0500603_001603 3300053150 Bacteria 5114
176 Ga0500634_0000285 3300053161 Bacteria 16218

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300014969 Ga0157376_10042449 Ga0157376_100424491 350
2 3300002737 JGI25162J39368_1000398 JGI25162J39368_100039821 355
3 3300002772 JGI25164J39214_1003700 JGI25164J39214_10037002 355
4 3300003762 Ga0055542_1000069 Ga0055542_100006942 355
5 3300025231 Ga0207427_100372 Ga0207427_10037220 355
6 3300025233 Ga0209437_100113 Ga0209437_10011344 355
7 3300025242 Ga0209258_104179 Ga0209258_1041793 355
8 3300025254 Ga0209148_1000005 Ga0209148_10000051429 355
9 iso_pu_bacteria 2615840624 2616295694 356
10 iso_pu_bacteria 2936381700 2936383789 356
11 iso_pu_bacteria 2818991457 2819662498 357
12 iso_pu_bacteria 2919130084 2919132050 357
13 iso_pu_bacteria 2929195423 2929199211 357
14 iso_pu_bacteria 8057798959 8057805278 357
15 3300049822 Ga0501035_0107988 Ga0501035_0107988_147_1223 358
16 3300038726 Ga0400490_26985 Ga0400490_26985_3017_4096 359
17 3300038735 Ga0400485_21837 Ga0400485_21837_992_2071 359
18 3300038741 Ga0400488_51110 Ga0400488_51110_14993_16072 359
19 3300038742 Ga0400486_21915 Ga0400486_21915_1120_2199 359
20 3300039093 Ga0400489_32070 Ga0400489_32070_1211_2290 359
21 3300003771 Ga0055526_1001672 Ga0055526_10016725 360
22 3300003775 Ga0055524_1028123 Ga0055524_10281232 360
23 3300003790 Ga0055528_1000322 Ga0055528_100032229 360
24 3300006914 Ga0075436_100002792 Ga0075436_1000027926 360
25 3300025273 Ga0209673_1000728 Ga0209673_100072836 360
26 3300025295 Ga0209564_1001105 Ga0209564_100110520 360
27 3300025299 Ga0209256_1000800 Ga0209256_100080012 360
28 3300032126 Ga0307415_100035839 Ga0307415_1000358393 360
29 3300041492 Ga0451835_0338844 Ga0451835_0338844_129_1211 360
30 3300041496 Ga0451839_0973534 Ga0451839_0973534_1380_2462 360
31 3300041498 Ga0451841_0720592 Ga0451841_0720592_1216_2298 360
32 3300041501 Ga0451845_0060883 Ga0451845_0060883_1215_2297 360
33 3300041505 Ga0451849_0361191 Ga0451849_0361191_18464_19546 360
34 3300041507 Ga0451851_0739334 Ga0451851_0739334_1338_2420 360
35 3300041509 Ga0451843_0756378 Ga0451843_0756378_424_1506 360
36 3300041512 Ga0451853_1668313 Ga0451853_1668313_1215_2297 360
37 3300044684 Ga0466966_0000811 Ga0466966_0000811_9300_10382 360
38 3300045051 Ga0451576_0000560 Ga0451576_0000560_2796_3878 360
39 3300046515 Ga0495620_0003953 Ga0495620_0003953_7140_8222 360
40 3300050514 nmdc:mga08x19_448_c1 nmdc:mga08x19_448_c1_2327_3409 360
41 iso_pu_bacteria 8018150411 8018152039 360
42 3300003856 Ga0058692_1000040 Ga0058692_100004071 361
43 3300005441 Ga0070700_100000824 Ga0070700_1000008245 361
44 3300005459 Ga0068867_100124859 Ga0068867_1001248591 361
45 3300013296 Ga0157374_10002341 Ga0157374_1000234113 361
46 3300026075 Ga0207708_10008506 Ga0207708_100085065 361
47 3300026089 Ga0207648_10056990 Ga0207648_100569902 361
48 3300027312 Ga0209371_1000048 Ga0209371_1000048200 361
49 3300030500 Ga0268256_1000049 Ga0268256_100004968 361
50 3300031251 Ga0265327_10000529 Ga0265327_1000052917 361
51 3300033524 Ga0316592_1005640 Ga0316592_10056402 361
52 3300044683 Ga0466965_0003903 Ga0466965_0003903_4349_5434 361
53 3300044693 Ga0466961_0010619 Ga0466961_0010619_1826_2911 361
54 3300044712 Ga0453684_0082042 Ga0453684_0082042_434_1519 361
55 3300045049 Ga0466959_0001157 Ga0466959_0001157_8477_9562 361
56 3300049741 Ga0501079_0111482 Ga0501079_0111482_593_1678 361
57 3300053161 Ga0500634_0000285 Ga0500634_0000285_13617_14702 361
58 3300013102 Ga0157371_10000928 Ga0157371_100009287 362
59 3300013104 Ga0157370_10073893 Ga0157370_100738934 362
60 3300013296 Ga0157374_10052575 Ga0157374_100525752 362
61 3300037418 Ga0395900_0054619 Ga0395900_0054619_2714_3802 362
62 3300037471 Ga0395905_0001214 Ga0395905_0001214_14637_15725 362
63 3300045051 Ga0451576_0000292 Ga0451576_0000292_51120_52208 362
64 3300049588 Ga0501072_0024509 Ga0501072_0024509_2855_3943 362
65 3300025258 Ga0209129_1006419 Ga0209129_10064192 363
66 3300038443 Ga0395901_0001017 Ga0395901_0001017_17887_19011 363
67 3300041509 Ga0451843_0110219 Ga0451843_0110219_1369_2673 363
68 3300046454 Ga0495592_0075052 Ga0495592_0075052_949_2040 363
69 3300046507 Ga0495606_0015986 Ga0495606_0015986_3946_5049 363
70 3300046516 Ga0495628_0220182 Ga0495628_0220182_117_1208 363
71 3300046543 Ga0495645_0084468 Ga0495645_0084468_1067_2158 363
72 3300046660 Ga0495625_0076161 Ga0495625_0076161_442_1830 363
73 3300053094 Ga0500566_0000570 Ga0500566_0000570_9707_10804 363
74 3300053150 Ga0500603_001603 Ga0500603_001603_2934_4031 363
75 3300045049 Ga0466959_0014408 Ga0466959_0014408_1461_2576 364
76 iso_pu_bacteria 2919046199 2919051298 365
77 3300039447 Ga0436361_1201302 Ga0436361_1201302_8728_9834 367
78 3300006353 Ga0075370_10016550 Ga0075370_100165503 368
79 3300050496 nmdc:mga07m45_13227_c1 nmdc:mga07m45_13227_c1_1460_2566 368
80 3300005353 Ga0070669_100013320 Ga0070669_1000133203 369
81 3300006195 Ga0075366_10002577 Ga0075366_100025772 369
82 3300025923 Ga0207681_10009734 Ga0207681_100097343 369
83 3300025926 Ga0207659_10103755 Ga0207659_101037552 369
84 3300025928 Ga0207700_10053894 Ga0207700_100538942 369
85 3300026095 Ga0207676_10406880 Ga0207676_104068802 369
86 3300045049 Ga0466959_0011038 Ga0466959_0011038_3367_4476 369
87 3300045836 Ga0466958_0087020 Ga0466958_0087020_72_1181 369
88 3300046692 Ga0495671_0062329 Ga0495671_0062329_284_1393 369
89 3300050493 nmdc:mga0k408_1808_c1 nmdc:mga0k408_1808_c1_7901_9010 369
90 3300005290 Ga0065712_10116179 Ga0065712_101161791 370
91 3300005340 Ga0070689_100088330 Ga0070689_1000883301 370
92 3300005365 Ga0070688_100013528 Ga0070688_1000135284 370
93 3300005539 Ga0068853_100108299 Ga0068853_1001082992 370
94 3300005577 Ga0068857_100237984 Ga0068857_1002379842 370
95 3300005617 Ga0068859_100069975 Ga0068859_1000699752 370
96 3300005719 Ga0068861_100108766 Ga0068861_1001087662 370
97 3300006847 Ga0075431_100086675 Ga0075431_1000866752 370
98 3300006880 Ga0075429_100076780 Ga0075429_1000767802 370
99 3300006931 Ga0097620_100069973 Ga0097620_1000699733 370
100 3300009094 Ga0111539_10008682 Ga0111539_1000868212 370
101 3300009147 Ga0114129_10031992 Ga0114129_100319924 370
102 3300009553 Ga0105249_10005591 Ga0105249_100055914 370
103 3300009553 Ga0105249_10030230 Ga0105249_100302304 370
104 3300015261 Ga0182006_1005092 Ga0182006_10050922 370
105 3300025297 Ga0209758_1001625 Ga0209758_100162519 370
106 3300025925 Ga0207650_10018309 Ga0207650_100183095 370
107 3300025926 Ga0207659_10242438 Ga0207659_102424381 370
108 3300025934 Ga0207686_10013195 Ga0207686_100131955 370
109 3300026041 Ga0207639_10115965 Ga0207639_101159652 370
110 3300026116 Ga0207674_10247019 Ga0207674_102470192 370
111 3300035695 Ga0373927_0069267 Ga0373927_0069267_36_1148 370
112 3300042002 Ga0439442_018835 Ga0439442_018835_220_1332 370
113 3300047320 Ga0495672_0011690 Ga0495672_0011690_2333_3445 370
114 3300050510 nmdc:mga06r32_67983_c1 nmdc:mga06r32_67983_c1_909_2021 370
115 3300005618 Ga0068864_100108055 Ga0068864_1001080552 371
116 3300005841 Ga0068863_100084141 Ga0068863_1000841412 371
117 3300009101 Ga0105247_10181444 Ga0105247_101814442 371
118 3300009176 Ga0105242_10004000 Ga0105242_1000400011 371
119 3300025931 Ga0207644_10088009 Ga0207644_100880092 371
120 3300025941 Ga0207711_10010945 Ga0207711_100109456 371
121 3300026088 Ga0207641_10104294 Ga0207641_101042942 371
122 3300026095 Ga0207676_10059412 Ga0207676_100594123 371
123 3300028794 Ga0307515_10000011 Ga0307515_10000011433 371
124 3300041460 Ga0451802_0532977 Ga0451802_0532977_50_1177 371
125 3300042004 Ga0439445_0021736 Ga0439445_0021736_283_1398 371
126 3300044712 Ga0453684_0001815 Ga0453684_0001815_26403_27518 371
127 3300048911 Ga0496108_0199687 Ga0496108_0199687_192_1307 371
128 3300048912 Ga0496109_0032898 Ga0496109_0032898_2883_3998 371
129 3300048915 Ga0496112_0027227 Ga0496112_0027227_415_1530 371
130 3300048927 Ga0496124_0064882 Ga0496124_0064882_1015_2130 371
131 3300048928 Ga0496125_0022093 Ga0496125_0022093_1755_2870 371
132 3300049707 Ga0501234_000736 Ga0501234_000736_2657_3772 371
133 3300003752 Ga0055539_1000590 Ga0055539_10005903 372
134 3300003756 Ga0055533_1000293 Ga0055533_100029311 372
135 3300025226 Ga0209674_100354 Ga0209674_10035413 372
136 3300025253 Ga0209677_100379 Ga0209677_10037911 372
137 3300025261 Ga0209233_1000955 Ga0209233_10009555 372
138 3300045976 Ga0466967_0074337 Ga0466967_0074337_1791_2909 372
139 3300001979 JGI24740J21852_10007916 JGI24740J21852_100079162 373
140 3300005330 Ga0070690_100069179 Ga0070690_1000691792 373
141 3300005334 Ga0068869_100001205 Ga0068869_1000012053 373
142 3300005347 Ga0070668_100025441 Ga0070668_1000254414 373
143 3300005353 Ga0070669_100001842 Ga0070669_1000018421 373
144 3300005354 Ga0070675_100003633 Ga0070675_1000036338 373
145 3300005356 Ga0070674_100002357 Ga0070674_1000023579 373
146 3300005367 Ga0070667_100003070 Ga0070667_1000030708 373
147 3300005456 Ga0070678_100036830 Ga0070678_1000368302 373
148 3300005457 Ga0070662_100006646 Ga0070662_1000066466 373
149 3300005543 Ga0070672_100001113 Ga0070672_1000011132 373
150 3300005616 Ga0068852_100018573 Ga0068852_1000185735 373
151 3300005719 Ga0068861_100005203 Ga0068861_1000052033 373
152 3300005841 Ga0068863_100008845 Ga0068863_1000088459 373
153 3300005842 Ga0068858_100002700 Ga0068858_10000270018 373
154 3300005843 Ga0068860_100008093 Ga0068860_1000080934 373
155 3300009098 Ga0105245_10016144 Ga0105245_100161443 373
156 3300009553 Ga0105249_10003753 Ga0105249_1000375313 373
157 3300013306 Ga0163162_10004605 Ga0163162_100046053 373
158 3300013308 Ga0157375_10022569 Ga0157375_100225694 373
159 3300014326 Ga0157380_10007519 Ga0157380_100075197 373
160 3300017792 Ga0163161_10007620 Ga0163161_100076203 373
161 3300025315 Ga0207697_10009728 Ga0207697_100097283 373
162 3300025899 Ga0207642_10002417 Ga0207642_100024172 373
163 3300025903 Ga0207680_10034745 Ga0207680_100347452 373
164 3300025907 Ga0207645_10005005 Ga0207645_100050056 373
165 3300025918 Ga0207662_10011949 Ga0207662_100119493 373
166 3300025923 Ga0207681_10000583 Ga0207681_1000058324 373
167 3300025935 Ga0207709_10019939 Ga0207709_100199393 373
168 3300025938 Ga0207704_10007104 Ga0207704_100071045 373
169 3300025940 Ga0207691_10003412 Ga0207691_1000341214 373
170 3300025942 Ga0207689_10012289 Ga0207689_100122895 373
171 3300025961 Ga0207712_10012267 Ga0207712_100122674 373
172 3300025972 Ga0207668_10006839 Ga0207668_100068394 373
173 3300025986 Ga0207658_10017850 Ga0207658_100178502 373
174 3300026035 Ga0207703_10002118 Ga0207703_100021184 373
175 3300026075 Ga0207708_10019464 Ga0207708_100194642 373
176 3300026088 Ga0207641_10071007 Ga0207641_100710072 373
177 3300026089 Ga0207648_10004537 Ga0207648_1000453713 373
178 3300026118 Ga0207675_100003015 Ga0207675_1000030152 373
179 3300026121 Ga0207683_10034058 Ga0207683_100340584 373
180 3300028380 Ga0268265_10014269 Ga0268265_100142693 373
181 3300028381 Ga0268264_10001636 Ga0268264_100016364 373
182 3300037471 Ga0395905_0007832 Ga0395905_0007832_5273_6397 373
183 3300042876 Ga0451577_0001505 Ga0451577_0001505_13887_15020 373
184 3300048906 Ga0496103_0129037 Ga0496103_0129037_478_1599 373

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

78

325

0.99

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

79

408

0.99

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

78

200

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1db3-assembly1.cif.gz_A-2 e.coli gdp-mannose 4,6-dehydratase 0.9408 4 357
1db3-assembly1.cif.gz_A-2 e.coli gdp-mannose 4,6-dehydratase 0.9326 4 357
6gpj-assembly1.cif.gz_A crystal structure of human gdp-d-mannose 4,6-dehydratase in complex with gdp-4f-man 0.9316 5 360
6q94-assembly3.cif.gz_H-2 crystal structure of human gdp-d-mannose 4,6-dehydratase (s156d) in complex with gdp-man 0.9315 5 359
6gpl-assembly1.cif.gz_B crystal structure of human gdp-d-mannose 4,6-dehydratase in complex with gdp-4k6d-man 0.9313 5 360
ID Description Score Start End Superfamily
1db3A02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9565 195 357 3.90.25.10
af_P0AC88_3_270_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9458 5 272 3.40.50.720
af_P0AC88_3_270_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9424 5 272 3.40.50.720
2z1mB02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9382 198 357 3.90.25.10
af_Q4D941_50_182_3.90.25.10 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.935 195 334 3.90.25.10
ID Description Score Start End GO Terms
AF-Q7WSX2-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9825 163 305 GO:0008446
GO:0042351
AF-A0A4U9I4R2-F1-model_v4 GDP-L-fucose synthase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) 0.9821 125 369 GO:0016853
GO:0042351
GO:0050577
GO:0070401
AF-A0A3C1Q2N9-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9815 151 351 GO:0008446
GO:0042351
AF-A0A730K5U1-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9805 187 302 GO:0008446
GO:0042351
AF-A0A7R9UCI6-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9791 113 235 GO:0008446
GO:0042351

Feature Viewer

pLDDT pTM Quality
88.02 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map