F281472

General Info

Members Datasets Scaffolds Average Seq Length
183 141 183 369

Family's Representative Sequence

Representative Sequence 3300048929|Ga0496126_0066635|Ga0496126_0066635_694_2028
Length 414
Sequence MGTSSRNFLWESWESSAAHDRVARIGGVSDASSPAGAPRLSAVRREGERVTPLELFFDLVFVLAITECTSLMSHHPSWTGLAQGLLVLGVLWWAWAGYAWLTSVIDPEAGAVRLVFFAAMASMLIAAICVPEAFANLALAFALSIGFFRIAHIALFAIAGADQPGLRRSVQALAISTAAAVGLLAAASAFDGLPQAALWVLALALDFGGPYFFGVEGWQLVPGHFAERHGLIIIIALGESIVEIGAGAAGWWVYFDVVALISARRLAEAEVGRVQNALARDSYSYLHLFLVAGIVITAFGLKTTIEGTGEHLEWVTSFALSGGIALYLLGLVAFRYRHRKTWNRLKPICAVALLVMIPVGTTIPALATLAIDAVLLALLVAREHLGYDERRDELRARNTMTEAEAELIAASEEE

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
10 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
15 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
25 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
26 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
27 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
43 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
44 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
62 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
63 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
64 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
65 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
68 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
69 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
70 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
71 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
72 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
73 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
74 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
75 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
76 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
77 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
78 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
79 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
80 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
81 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
82 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
83 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
84 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
85 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
86 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
87 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
88 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
89 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
90 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
91 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
92 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
93 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
94 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
95 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
96 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
97 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
98 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
99 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
100 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
101 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
102 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
103 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
106 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
107 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
108 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
109 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
112 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
113 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
114 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
115 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
116 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
124 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
125 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
126 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
127 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
128 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
129 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
130 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
131 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
132 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
133 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
134 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
135 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
136 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
137 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
138 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
139 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
140 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.37
Nodule 0
Rhizoplane 12.57
Rhizosphere 77.05
Stem 0
Stem Tuber 0
Unclassified 6.01

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001840 3300003203 Bacteria 9961
2 Ga0070683_100011235 3300005329 Bacteria 7727
3 Ga0070666_10015279 3300005335 Bacteria 4896
4 Ga0070666_10045025 3300005335 Bacteria 2957
5 Ga0070682_100000011 3300005337 Bacteria 266253
6 Ga0070660_100100764 3300005339 Bacteria 2288
7 Ga0070691_10000002 3300005341 Bacteria 90686
8 Ga0070661_100000145 3300005344 Bacteria 58346
9 Ga0070675_100000036 3300005354 Bacteria 85959
10 Ga0070673_100003392 3300005364 Bacteria 9911
11 Ga0070688_100001424 3300005365 Bacteria 11907
12 Ga0070688_100019959 3300005365 Bacteria 3890
13 Ga0070667_100034874 3300005367 Bacteria 4212
14 Ga0070714_100022056 3300005435 Bacteria 5218
15 Ga0070713_100000047 3300005436 Bacteria 76760
16 Ga0070663_100007717 3300005455 Bacteria 6570
17 Ga0070685_10000019 3300005466 Bacteria 105881
18 Ga0070685_10086618 3300005466 Bacteria 1889
19 Ga0070679_100004961 3300005530 Bacteria 12284
20 Ga0070684_100023261 3300005535 Bacteria 5179
21 Ga0070684_100099415 3300005535 Bacteria 2597
22 Ga0070695_100055463 3300005545 Bacteria 2554
23 Ga0070665_100010197 3300005548 Bacteria 9504
24 Ga0068854_100000113 3300005578 Bacteria 55436
25 Ga0068856_100001668 3300005614 Bacteria 23239
26 Ga0068866_10012057 3300005718 Bacteria 3760
27 Ga0081455_10080200 3300005937 Bacteria 2676
28 Ga0081538_10012606 3300005981 Bacteria 6770
29 Ga0081540_1000628 3300005983 Bacteria 33596
30 Ga0081539_10000288 3300005985 Bacteria 113905
31 Ga0081539_10001998 3300005985 Bacteria 30966
32 Ga0081539_10003342 3300005985 Bacteria 19934
33 Ga0070717_10000005 3300006028 Bacteria 357819
34 Ga0075365_10005362 3300006038 Bacteria 6909
35 Ga0075365_10019443 3300006038 Bacteria 4193
36 Ga0075432_10016579 3300006058 Bacteria 2515
37 Ga0075430_100050367 3300006846 Bacteria 3512
38 Ga0075433_10045602 3300006852 Bacteria 3811
39 Ga0075433_10188237 3300006852 Bacteria 1836
40 Ga0111539_10032875 3300009094 Bacteria 6299
41 Ga0111539_10038391 3300009094 Bacteria 5775
42 Ga0111539_10215792 3300009094 Bacteria 2235
43 Ga0105245_10006909 3300009098 Bacteria 9952
44 Ga0114129_10027476 3300009147 Bacteria 8055
45 Ga0114129_10139830 3300009147 Bacteria 3320
46 Ga0105243_10074847 3300009148 Bacteria 2747
47 Ga0105242_10000059 3300009176 Bacteria 75563
48 Ga0105242_10000699 3300009176 Bacteria 26334
49 Ga0105239_10296871 3300010375 Bacteria 1819
50 Ga0157370_10002276 3300013104 Bacteria 23284
51 Ga0157369_10000014 3300013105 Bacteria 266411
52 Ga0157378_10010035 3300013297 Bacteria 8254
53 Ga0157375_10000942 3300013308 Bacteria 25237
54 Ga0157380_10001261 3300014326 Bacteria 16429
55 Ga0163161_10054571 3300017792 Bacteria 2900
56 Ga0207680_10002629 3300025903 Bacteria 8389
57 Ga0207680_10027465 3300025903 Bacteria 3170
58 Ga0207649_10000003 3300025920 Bacteria 388908
59 Ga0207652_10025224 3300025921 Bacteria 4940
60 Ga0207659_10000013 3300025926 Bacteria 172742
61 Ga0207687_10002485 3300025927 Bacteria 12525
62 Ga0207700_10000033 3300025928 Bacteria 123113
63 Ga0207664_10036437 3300025929 Bacteria 3803
64 Ga0207686_10000116 3300025934 Bacteria 64638
65 Ga0207686_10001664 3300025934 Bacteria 12369
66 Ga0207709_10046320 3300025935 Bacteria 2638
67 Ga0207661_10000220 3300025944 Bacteria 37288
68 Ga0207651_10001092 3300025960 Bacteria 12041
69 Ga0207668_10014953 3300025972 Bacteria 4814
70 Ga0207658_10024243 3300025986 Bacteria 4243
71 Ga0207658_10073394 3300025986 Bacteria 2597
72 Ga0207658_10087158 3300025986 Bacteria 2410
73 Ga0207678_10000556 3300026067 Bacteria 34074
74 Ga0207702_10000076 3300026078 Bacteria 112300
75 Ga0207428_10098134 3300027907 Bacteria 2267
76 Ga0268266_10000160 3300028379 Bacteria 125999
77 Ga0268266_10000376 3300028379 Bacteria 68245
78 Ga0265319_1000014 3300028563 Bacteria 177623
79 Ga0265338_10000244 3300028800 Bacteria 100528
80 Ga0265316_10083589 3300031344 Bacteria 2446
81 Ga0373932_0045326 3300035112 Bacteria 1286
82 Ga0395899_0045393 3300037312 Bacteria 3274
83 Ga0395900_0028969 3300037418 Bacteria 5677
84 Ga0395898_0026484 3300037466 Bacteria 5833
85 Ga0395905_0052031 3300037471 Bacteria 3835
86 Ga0395901_0040702 3300038443 Bacteria 4813
87 Ga0395901_0114166 3300038443 Bacteria 2837
88 Ga0395901_0161044 3300038443 Bacteria 2357
89 Ga0451807_1760983 3300041486 Bacteria 1906
90 Ga0466968_0034378 3300044735 Bacteria 2115
91 Ga0466960_0005217 3300044901 Bacteria 5136
92 Ga0466960_0042864 3300044901 Bacteria 2150
93 Ga0466967_0020716 3300045976 Bacteria 5323
94 Ga0495592_0000401 3300046454 Bacteria 33431
95 Ga0495603_0001352 3300046455 Bacteria 14239
96 Ga0495629_0001620 3300046459 Bacteria 17689
97 Ga0495594_0000045 3300046499 Bacteria 54326
98 Ga0495608_0000007 3300046511 Bacteria 313495
99 Ga0495608_0017034 3300046511 Bacteria 5028
100 Ga0495652_0000010 3300046529 Bacteria 261584
101 Ga0495652_0015025 3300046529 Bacteria 6936
102 Ga0495598_0000798 3300046537 Bacteria 6025
103 Ga0495645_0095125 3300046543 Bacteria 2124
104 Ga0495622_0000164 3300046557 Bacteria 55253
105 Ga0495625_0000032 3300046660 Bacteria 233135
106 Ga0495588_0000203 3300046674 Bacteria 59454
107 Ga0495657_0000001 3300046675 Bacteria 445641
108 Ga0495613_0000032 3300046689 Bacteria 139806
109 Ga0495624_0096106 3300046690 Bacteria 1825
110 Ga0495670_0016625 3300046691 Bacteria 3618
111 Ga0495600_0048069 3300046809 Bacteria 2783
112 Ga0495604_0000038 3300047317 Bacteria 123703
113 Ga0495604_0000577 3300047317 Bacteria 32087
114 Ga0495676_0000186 3300047321 Bacteria 49054
115 Ga0495676_0006056 3300047321 Bacteria 11117
116 Ga0495680_0000050 3300047322 Bacteria 95945
117 Ga0495680_0016128 3300047322 Bacteria 6424
118 Ga0495675_0000017 3300047444 Bacteria 123394
119 Ga0495602_0000007 3300048088 Bacteria 273212
120 Ga0496100_0000001 3300048903 Bacteria 530179
121 Ga0496101_0000004 3300048904 Bacteria 331599
122 Ga0496102_0000294 3300048905 Bacteria 64001
123 Ga0496102_0001710 3300048905 Bacteria 19219
124 Ga0496102_0113231 3300048905 Bacteria 2531
125 Ga0496103_0000159 3300048906 Bacteria 71148
126 Ga0496103_0016463 3300048906 Bacteria 4413
127 Ga0496104_0027753 3300048907 Bacteria 5240
128 Ga0496105_0036985 3300048908 Bacteria 4022
129 Ga0496105_0078080 3300048908 Bacteria 2734
130 Ga0496106_0000056 3300048909 Bacteria 90682
131 Ga0496107_0000005 3300048910 Bacteria 281747
132 Ga0496108_0042895 3300048911 Bacteria 3777
133 Ga0496108_0195110 3300048911 Bacteria 1756
134 Ga0496109_0000056 3300048912 Bacteria 120835
135 Ga0496110_0000114 3300048913 Bacteria 44437
136 Ga0496110_0169824 3300048913 Bacteria 1978
137 Ga0496111_0000008 3300048914 Bacteria 96148
138 Ga0496112_0004716 3300048915 Bacteria 11615
139 Ga0496113_0000099 3300048916 Bacteria 36270
140 Ga0496114_0016455 3300048917 Bacteria 5961
141 Ga0496115_0000011 3300048918 Bacteria 222529
142 Ga0496116_0000367 3300048919 Bacteria 69349
143 Ga0496117_0021966 3300048920 Bacteria 5137
144 Ga0496118_0000790 3300048921 Bacteria 50676
145 Ga0496118_0041536 3300048921 Bacteria 3640
146 Ga0496119_0002341 3300048922 Bacteria 20874
147 Ga0496119_0005130 3300048922 Bacteria 12695
148 Ga0496120_0086141 3300048923 Bacteria 1690
149 Ga0496121_0016967 3300048924 Bacteria 7479
150 Ga0496126_0045339 3300048929 Bacteria 4042
151 Ga0496126_0066635 3300048929 Bacteria 3219
152 Ga0496126_0169949 3300048929 Bacteria 1858
153 Ga0501047_0150083 3300049581 Bacteria 2207
154 Ga0501069_0024158 3300049585 Bacteria 3315
155 Ga0501070_0079460 3300049586 Bacteria 2714
156 Ga0501071_0012193 3300049587 Bacteria 5819
157 Ga0501074_0013390 3300049590 Bacteria 5963
158 Ga0501074_0062872 3300049590 Bacteria 2674
159 Ga0501079_0033905 3300049741 Bacteria 3927
160 Ga0501081_0106593 3300049743 Bacteria 1987
161 Ga0501083_0019290 3300049744 Bacteria 4749
162 Ga0501044_0052610 3300049823 Bacteria 4195
163 nmdc:mga0yw44_135298_c1 3300050492 Bacteria 1598
164 nmdc:mga0yw44_192177_c1 3300050492 Bacteria 1347
165 nmdc:mga0yw44_8493_c1 3300050492 Bacteria 5122
166 nmdc:mga05p37_49066_c1 3300050507 Bacteria 5192
167 nmdc:mga0qj67_43537_c1 3300050509 Bacteria 3535
168 nmdc:mga06r32_52883_c1 3300050510 Bacteria 3891
169 nmdc:mga08y16_200123_c1 3300050511 Bacteria 2070
170 nmdc:mga0a205_220894_c1 3300050515 Bacteria 1780
171 nmdc:mga0a205_222112_c1 3300050515 Bacteria 1774
172 Ga0495601_0028216 3300053077 Bacteria 3475
173 Ga0495612_0004487 3300053078 Bacteria 5795
174 Ga0495655_0000002 3300053083 Bacteria 312752
175 Ga0495595_0000002 3300053084 Bacteria 445641
176 Ga0495595_0001061 3300053084 Bacteria 10636
177 Ga0495619_0000053 3300053085 Bacteria 98761
178 Ga0495619_0000081 3300053085 Bacteria 72034
179 Ga0495619_0000516 3300053085 Bacteria 25730
180 Ga0500566_0014170 3300053094 Bacteria 4687
181 Ga0500595_028958 3300053119 Bacteria 1883
182 Ga0500628_000001 3300053129 Bacteria 564074
183 Ga0530510_0164274 3300061734 Bacteria 1643

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300047321 Ga0495676_0006056 Ga0495676_0006056_1170_2294 304
2 3300025986 Ga0207658_10024243 Ga0207658_100242433 306
3 3300017792 Ga0163161_10054571 Ga0163161_100545711 324
4 3300053083 Ga0495655_0000002 Ga0495655_0000002_39955_41142 324
5 3300053129 Ga0500628_000001 Ga0500628_000001_128625_129812 324
6 3300041486 Ga0451807_1760983 Ga0451807_1760983_126_1310 325
7 3300009176 Ga0105242_10000059 Ga0105242_1000005936 326
8 3300025934 Ga0207686_10000116 Ga0207686_1000011611 326
9 3300048905 Ga0496102_0000294 Ga0496102_0000294_61611_62798 326
10 3300048906 Ga0496103_0000159 Ga0496103_0000159_1391_2578 326
11 3300048903 Ga0496100_0000001 Ga0496100_0000001_311250_312437 329
12 3300048904 Ga0496101_0000004 Ga0496101_0000004_112602_113789 329
13 3300048909 Ga0496106_0000056 Ga0496106_0000056_33575_34762 329
14 3300048910 Ga0496107_0000005 Ga0496107_0000005_217811_218998 329
15 3300046511 Ga0495608_0000007 Ga0495608_0000007_212657_213844 331
16 3300046675 Ga0495657_0000001 Ga0495657_0000001_344803_345990 331
17 3300047444 Ga0495675_0000017 Ga0495675_0000017_99658_100845 331
18 3300053084 Ga0495595_0000002 Ga0495595_0000002_99652_100839 331
19 3300053085 Ga0495619_0000053 Ga0495619_0000053_53310_54497 331
20 3300009094 Ga0111539_10038391 Ga0111539_100383912 332
21 3300046459 Ga0495629_0001620 Ga0495629_0001620_8329_9516 332
22 3300053094 Ga0500566_0014170 Ga0500566_0014170_3425_4612 332
23 3300005339 Ga0070660_100100764 Ga0070660_1001007642 333
24 3300005718 Ga0068866_10012057 Ga0068866_100120574 333
25 3300025972 Ga0207668_10014953 Ga0207668_100149534 333
26 3300047321 Ga0495676_0000186 Ga0495676_0000186_32418_33605 333
27 3300005614 Ga0068856_100001668 Ga0068856_1000016685 334
28 3300026078 Ga0207702_10000076 Ga0207702_1000007650 334
29 3300005548 Ga0070665_100010197 Ga0070665_1000101974 336
30 3300025986 Ga0207658_10073394 Ga0207658_100733943 336
31 3300028379 Ga0268266_10000376 Ga0268266_1000037630 336
32 3300005337 Ga0070682_100000011 Ga0070682_10000001188 337
33 3300005365 Ga0070688_100019959 Ga0070688_1000199593 337
34 3300005329 Ga0070683_100011235 Ga0070683_1000112356 338
35 3300005535 Ga0070684_100023261 Ga0070684_1000232614 338
36 3300025944 Ga0207661_10000220 Ga0207661_100002203 338
37 3300048915 Ga0496112_0004716 Ga0496112_0004716_7037_8227 338
38 3300048916 Ga0496113_0000099 Ga0496113_0000099_11682_12872 338
39 3300009148 Ga0105243_10074847 Ga0105243_100748472 339
40 3300025935 Ga0207709_10046320 Ga0207709_100463203 339
41 3300044735 Ga0466968_0034378 Ga0466968_0034378_753_1940 339
42 3300048905 Ga0496102_0113231 Ga0496102_0113231_194_1447 340
43 3300053085 Ga0495619_0000081 Ga0495619_0000081_30968_32149 341
44 3300005335 Ga0070666_10045025 Ga0070666_100450252 342
45 3300013105 Ga0157369_10000014 Ga0157369_1000001415 342
46 3300014326 Ga0157380_10001261 Ga0157380_1000126111 342
47 3300025903 Ga0207680_10027465 Ga0207680_100274652 342
48 3300046690 Ga0495624_0096106 Ga0495624_0096106_90_1274 343
49 3300010375 Ga0105239_10296871 Ga0105239_102968712 344
50 3300046543 Ga0495645_0095125 Ga0495645_0095125_769_1944 344
51 3300038443 Ga0395901_0114166 Ga0395901_0114166_1101_2300 347
52 3300047322 Ga0495680_0016128 Ga0495680_0016128_1060_2247 347
53 3300049744 Ga0501083_0019290 Ga0501083_0019290_2960_4135 347
54 3300005341 Ga0070691_10000002 Ga0070691_1000000237 348
55 3300005436 Ga0070713_100000047 Ga0070713_1000000472 348
56 3300005545 Ga0070695_100055463 Ga0070695_1000554632 348
57 3300025928 Ga0207700_10000033 Ga0207700_10000033105 348
58 3300048911 Ga0496108_0195110 Ga0496108_0195110_108_1298 348
59 3300049581 Ga0501047_0150083 Ga0501047_0150083_738_1913 348
60 3300006846 Ga0075430_100050367 Ga0075430_1000503674 349
61 3300009147 Ga0114129_10027476 Ga0114129_100274764 349
62 3300046454 Ga0495592_0000401 Ga0495592_0000401_6166_7338 349
63 3300046537 Ga0495598_0000798 Ga0495598_0000798_3314_4498 349
64 3300049586 Ga0501070_0079460 Ga0501070_0079460_441_1682 349
65 3300049743 Ga0501081_0106593 Ga0501081_0106593_80_1231 349
66 3300050507 nmdc:mga05p37_49066_c1 nmdc:mga05p37_49066_c1_2412_3623 349
67 3300050509 nmdc:mga0qj67_43537_c1 nmdc:mga0qj67_43537_c1_1967_3178 349
68 3300046529 Ga0495652_0015025 Ga0495652_0015025_3960_5135 350
69 3300045976 Ga0466967_0020716 Ga0466967_0020716_3807_4955 351
70 3300005983 Ga0081540_1000628 Ga0081540_100062820 352
71 3300047317 Ga0495604_0000577 Ga0495604_0000577_5651_6832 352
72 3300048917 Ga0496114_0016455 Ga0496114_0016455_2817_3968 352
73 3300028563 Ga0265319_1000014 Ga0265319_1000014133 353
74 3300028800 Ga0265338_10000244 Ga0265338_100002449 353
75 3300031344 Ga0265316_10083589 Ga0265316_100835892 353
76 3300046455 Ga0495603_0001352 Ga0495603_0001352_11578_12789 353
77 3300046809 Ga0495600_0048069 Ga0495600_0048069_1383_2564 356
78 3300048921 Ga0496118_0041536 Ga0496118_0041536_540_1802 356
79 3300047322 Ga0495680_0000050 Ga0495680_0000050_26468_27652 358
80 3300048923 Ga0496120_0086141 Ga0496120_0086141_49_1302 358
81 3300046511 Ga0495608_0017034 Ga0495608_0017034_1713_2888 359
82 3300044901 Ga0466960_0005217 Ga0466960_0005217_2446_3636 360
83 3300049585 Ga0501069_0024158 Ga0501069_0024158_418_1662 360
84 3300049587 Ga0501071_0012193 Ga0501071_0012193_1400_2668 360
85 3300049741 Ga0501079_0033905 Ga0501079_0033905_845_2113 360
86 3300049823 Ga0501044_0052610 Ga0501044_0052610_1429_2697 360
87 3300048088 Ga0495602_0000007 Ga0495602_0000007_69457_70674 361
88 3300038443 Ga0395901_0161044 Ga0395901_0161044_967_2130 362
89 3300005365 Ga0070688_100001424 Ga0070688_1000014248 363
90 3300005455 Ga0070663_100007717 Ga0070663_1000077178 363
91 3300005466 Ga0070685_10000019 Ga0070685_1000001917 363
92 3300005530 Ga0070679_100004961 Ga0070679_1000049616 363
93 3300005535 Ga0070684_100099415 Ga0070684_1000994152 363
94 3300025921 Ga0207652_10025224 Ga0207652_100252244 363
95 3300026067 Ga0207678_10000556 Ga0207678_1000055612 363
96 3300046689 Ga0495613_0000032 Ga0495613_0000032_28003_29223 363
97 3300061734 Ga0530510_0164274 Ga0530510_0164274_344_1540 363
98 3300006852 Ga0075433_10045602 Ga0075433_100456023 364
99 3300009094 Ga0111539_10215792 Ga0111539_102157922 364
100 3300046691 Ga0495670_0016625 Ga0495670_0016625_850_2034 364
101 3300050510 nmdc:mga06r32_52883_c1 nmdc:mga06r32_52883_c1_804_2006 364
102 3300050511 nmdc:mga08y16_200123_c1 nmdc:mga08y16_200123_c1_135_1337 364
103 3300050515 nmdc:mga0a205_222112_c1 nmdc:mga0a205_222112_c1_135_1337 364
104 3300053078 Ga0495612_0004487 Ga0495612_0004487_1449_2633 364
105 3300005937 Ga0081455_10080200 Ga0081455_100802002 366
106 3300005985 Ga0081539_10001998 Ga0081539_1000199814 366
107 3300006028 Ga0070717_10000005 Ga0070717_10000005171 366
108 3300048906 Ga0496103_0016463 Ga0496103_0016463_3100_4353 366
109 3300005466 Ga0070685_10086618 Ga0070685_100866182 367
110 3300037312 Ga0395899_0045393 Ga0395899_0045393_1726_2919 368
111 3300037418 Ga0395900_0028969 Ga0395900_0028969_2298_3491 368
112 3300037466 Ga0395898_0026484 Ga0395898_0026484_2338_3531 368
113 3300037471 Ga0395905_0052031 Ga0395905_0052031_2553_3746 368
114 3300038443 Ga0395901_0040702 Ga0395901_0040702_2292_3485 368
115 3300005335 Ga0070666_10015279 Ga0070666_100152792 369
116 3300005364 Ga0070673_100003392 Ga0070673_10000339210 369
117 3300005367 Ga0070667_100034874 Ga0070667_1000348744 369
118 3300025903 Ga0207680_10002629 Ga0207680_100026298 369
119 3300025960 Ga0207651_10001092 Ga0207651_1000109210 369
120 3300025986 Ga0207658_10087158 Ga0207658_100871582 369
121 3300028379 Ga0268266_10000160 Ga0268266_1000016041 369
122 3300046674 Ga0495588_0000203 Ga0495588_0000203_37904_39082 369
123 3300048913 Ga0496110_0169824 Ga0496110_0169824_701_1897 369
124 3300048929 Ga0496126_0045339 Ga0496126_0045339_2457_3713 369
125 3300049590 Ga0501074_0013390 Ga0501074_0013390_96_1379 369
126 3300006038 Ga0075365_10005362 Ga0075365_100053621 370
127 3300009147 Ga0114129_10139830 Ga0114129_101398303 370
128 3300050492 nmdc:mga0yw44_192177_c1 nmdc:mga0yw44_192177_c1_98_1294 370
129 3300005981 Ga0081538_10012606 Ga0081538_100126066 371
130 3300013308 Ga0157375_10000942 Ga0157375_1000094211 371
131 3300027907 Ga0207428_10098134 Ga0207428_100981342 371
132 3300046557 Ga0495622_0000164 Ga0495622_0000164_52781_54001 371
133 3300048913 Ga0496110_0000114 Ga0496110_0000114_24013_25161 371
134 3300048914 Ga0496111_0000008 Ga0496111_0000008_55859_57007 371
135 3300053084 Ga0495595_0001061 Ga0495595_0001061_7801_8994 371
136 3300053085 Ga0495619_0000516 Ga0495619_0000516_9844_11031 371
137 3300048911 Ga0496108_0042895 Ga0496108_0042895_1110_2291 372
138 3300048912 Ga0496109_0000056 Ga0496109_0000056_115104_116285 372
139 3300048929 Ga0496126_0066635 Ga0496126_0066635_694_2028 372
140 3300053077 Ga0495601_0028216 Ga0495601_0028216_1999_3228 372
141 3300053119 Ga0500595_028958 Ga0500595_028958_594_1856 372
142 3300005344 Ga0070661_100000145 Ga0070661_10000014534 373
143 3300005435 Ga0070714_100022056 Ga0070714_1000220567 373
144 3300013297 Ga0157378_10010035 Ga0157378_100100357 373
145 3300025920 Ga0207649_10000003 Ga0207649_10000003397 373
146 3300025929 Ga0207664_10036437 Ga0207664_100364372 373
147 3300044901 Ga0466960_0042864 Ga0466960_0042864_462_1661 373
148 3300046529 Ga0495652_0000010 Ga0495652_0000010_159063_160295 373
149 3300048905 Ga0496102_0001710 Ga0496102_0001710_5513_6775 373
150 3300048920 Ga0496117_0021966 Ga0496117_0021966_3072_4334 373
151 3300048921 Ga0496118_0000790 Ga0496118_0000790_12531_13793 373
152 3300048908 Ga0496105_0036985 Ga0496105_0036985_930_2102 374
153 3300047317 Ga0495604_0000038 Ga0495604_0000038_7447_8640 375
154 3300048929 Ga0496126_0169949 Ga0496126_0169949_222_1475 375
155 3300050492 nmdc:mga0yw44_135298_c1 nmdc:mga0yw44_135298_c1_68_1234 375
156 3300013104 Ga0157370_10002276 Ga0157370_100022762 376
157 3300048919 Ga0496116_0000367 Ga0496116_0000367_49682_50932 376
158 3300048922 Ga0496119_0002341 Ga0496119_0002341_8046_9296 376
159 3300005354 Ga0070675_100000036 Ga0070675_1000000362 377
160 3300025926 Ga0207659_10000013 Ga0207659_10000013155 377
161 3300048907 Ga0496104_0027753 Ga0496104_0027753_1909_3174 377
162 3300048908 Ga0496105_0078080 Ga0496105_0078080_507_1772 377
163 3300048922 Ga0496119_0005130 Ga0496119_0005130_8141_9406 377
164 3300048924 Ga0496121_0016967 Ga0496121_0016967_4152_5417 377
165 3300006058 Ga0075432_10016579 Ga0075432_100165792 378
166 3300006852 Ga0075433_10188237 Ga0075433_101882372 378
167 3300035112 Ga0373932_0045326 Ga0373932_0045326_40_1251 378
168 3300049590 Ga0501074_0062872 Ga0501074_0062872_491_1747 378
169 3300050515 nmdc:mga0a205_220894_c1 nmdc:mga0a205_220894_c1_265_1476 378
170 3300005578 Ga0068854_100000113 Ga0068854_10000011347 379
171 3300009098 Ga0105245_10006909 Ga0105245_100069099 379
172 3300009176 Ga0105242_10000699 Ga0105242_100006997 379
173 3300025927 Ga0207687_10002485 Ga0207687_100024854 379
174 3300025934 Ga0207686_10001664 Ga0207686_1000166412 379
175 3300048918 Ga0496115_0000011 Ga0496115_0000011_171601_172788 381
176 3300003203 JGI25406J46586_10001840 JGI25406J46586_100018409 383
177 3300005985 Ga0081539_10000288 Ga0081539_1000028898 383
178 3300005985 Ga0081539_10003342 Ga0081539_1000334218 383
179 3300006038 Ga0075365_10019443 Ga0075365_100194433 383
180 3300009094 Ga0111539_10032875 Ga0111539_100328752 383
181 3300046499 Ga0495594_0000045 Ga0495594_0000045_25361_26590 383
182 3300046660 Ga0495625_0000032 Ga0495625_0000032_207515_208717 383
183 3300050492 nmdc:mga0yw44_8493_c1 nmdc:mga0yw44_8493_c1_2069_3268 383

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06772

LtrA

Bacterial low temperature requirement A protein (LtrA)

49

381

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7myz-assembly1.cif.gz_C structure of the full length 5-tm receptor cd47 bound to fab b6h12 0.462 50 182
4p9t-assembly1.cif.gz_C structure of the free form of the n-terminal vh1 domain of monomeric alpha-catenin 0.3395 88 314
7ar7-assembly1.cif.gz_L cryo-em structure of arabidopsis thaliana complex-i (open conformation) 0.3394 50 337
6eid-assembly2.cif.gz_B crystal structure of wild-type channelrhodopsin 2 0.3278 15 280
1jv6-assembly1.cif.gz_A bacteriorhodopsin d85s/f219l double mutant at 2.00 angstrom resolution 0.327 50 277
ID Description Score Start End Superfamily
af_E7F508_133_250_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.632 82 178 1.20.120.230
2l7aA00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.6301 84 182 1.20.120.230
af_Q9Y7U1_22_240_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.5507 24 182 1.20.1070.10
af_E7F508_133_250_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.5438 82 178 1.20.120.230
2l7aA00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.5016 84 182 1.20.120.230
ID Description Score Start End GO Terms
AF-A0A7V9HSQ4-F1-model_v4 Low temperature requirement protein A 0.9783 51 173 GO:0016020
AF-A0A538C764-F1-model_v4 Low temperature requirement protein A 0.9734 14 373 GO:0016020
AF-A0A1E4HJE9-F1-model_v4 Low temperature requirement protein A 0.9692 41 373 GO:0016020
AF-A0A524JGK3-F1-model_v4 Low temperature requirement protein A 0.9668 8 376 GO:0016020
AF-A0A537YS58-F1-model_v4 Low temperature requirement protein A 0.9655 5 280 GO:0016020

Feature Viewer

pLDDT pTM Quality
87.21 0.87 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map