F281028

General Info

Members Datasets Scaffolds Average Seq Length
183 145 167 410

Family's Representative Sequence

Representative Sequence 3300028381|Ga0268264_10005527|Ga0268264_1000552710
Length 434
Sequence MTDFAAAMPDSAAREDVPAPPSRITTLDIVRGVAVMGILAMNIVAFSMPFQAYMNPTAYGLESQADLGSWLFSFVFIDGKMRGLFSFLFGASTLLVIQQARAAGESPARIHYARMFWLLIFGLLHFYFIWFGDILTMYALTGLILFFFRNLSVRKLILWGIALLLVQTTLMAGGAWEVQQLAAAMAGPHPDPEIVAGWQNFHQAFGRPTGQELARNMTLFLGSWDGLVQQRLIVQGLEPFTGAKFFIAETLAYMLFGMAALKSGFFRGEWSVARYRKWALIGFAIAIPVYAVIAWLLIRADFSVPAVFALSLGATTPFRPFMIVAIAATIILLTRKGGWLVDRIAAAGRAAFTNYLGTSLVMTTLFYGYGLGWYGHLSRIQLWLPVVGAWILMLLWSKPWLDRFNYGPFEWLWRSLARARFQPMRKRTSSTSSA

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
3 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
4 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
5 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
6 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
7 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
8 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
9 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
10 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
11 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
12 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
13 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
14 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
15 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
16 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
17 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
18 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
19 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
20 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
21 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
22 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
23 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
24 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
25 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
26 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
27 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
28 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
29 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
30 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
31 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
32 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
33 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
34 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
35 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
36 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
37 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
38 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
42 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
43 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
44 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
45 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
49 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
76 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
80 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
85 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
86 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
93 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
94 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
95 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
96 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
97 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
98 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
99 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
100 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
101 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
102 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
103 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
104 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
105 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
106 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
107 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
108 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
109 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
110 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
111 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
112 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
113 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
114 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
115 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
116 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
117 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
118 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
119 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
120 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
121 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
122 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
123 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
124 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
133 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
134 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
135 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
136 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
137 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
138 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
139 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
140 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
141 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
142 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
143 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
144 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
145 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.16
Metatranscriptomes 1.09
Isolates 8.74

Biome Distribution

Category Percentage (%)
Aerial Root 1.64
Bulb 0
Endosphere 15.85
Nodule 0
Rhizoplane 3.28
Rhizosphere 69.4
Stem 0
Stem Tuber 0
Unclassified 9.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3223864 2162886007 Bacteria 1700
2 JGI24034J26672_10003724 3300002239 Bacteria 2132
3 Ga0055536_1011963 3300003781 Bacteria 3266
4 Ga0055530_10001145 3300003791 Bacteria 20641
5 Ga0055531_10000525 3300003794 Bacteria 34457
6 Ga0055531_10001717 3300003794 Bacteria 15697
7 Ga0065165_1003703 3300005262 Bacteria 10360
8 Ga0065704_10074252 3300005289 Bacteria 6421
9 Ga0070658_10205331 3300005327 Bacteria 1663
10 Ga0070670_100273856 3300005331 Bacteria 1473
11 Ga0070677_10000607 3300005333 Bacteria 12071
12 Ga0068868_100000372 3300005338 Bacteria 30581
13 Ga0070660_100000729 3300005339 Bacteria 21788
14 Ga0070661_100000263 3300005344 Bacteria 43084
15 Ga0070692_10062977 3300005345 Bacteria 1958
16 Ga0070669_100000148 3300005353 Bacteria 62879
17 Ga0070669_100027677 3300005353 Bacteria 4080
18 Ga0070675_100132904 3300005354 Bacteria 2122
19 Ga0070671_100003570 3300005355 Bacteria 12166
20 Ga0070659_100000099 3300005366 Bacteria 63815
21 Ga0070659_100013486 3300005366 Bacteria 6083
22 Ga0070659_100029404 3300005366 Bacteria 4247
23 Ga0070667_100000779 3300005367 Bacteria 30021
24 Ga0070663_100003968 3300005455 Bacteria 8630
25 Ga0070663_100007657 3300005455 Bacteria 6589
26 Ga0070662_100013890 3300005457 Bacteria 5365
27 Ga0070662_100194486 3300005457 Bacteria 1606
28 Ga0070686_100000123 3300005544 Bacteria 55299
29 Ga0070665_100000011 3300005548 Bacteria 525539
30 Ga0070665_100001478 3300005548 Bacteria 27506
31 Ga0070665_100001786 3300005548 Bacteria 24494
32 Ga0068860_100050863 3300005843 Bacteria 3944
33 Ga0081539_10008059 3300005985 Bacteria 9329
34 Ga0075368_10000166 3300006042 Bacteria 17785
35 Ga0075367_10000165 3300006178 Bacteria 20961
36 Ga0075434_100183272 3300006871 Bacteria 2114
37 Ga0075429_100137399 3300006880 Bacteria 2139
38 Ga0105245_10060975 3300009098 Bacteria 3399
39 Ga0105248_10013367 3300009177 Bacteria 9035
40 Ga0105246_10000073 3300011119 Bacteria 41786
41 Ga0157373_10019790 3300013100 Bacteria 4896
42 Ga0157371_10149586 3300013102 Bacteria 1665
43 Ga0157370_10049612 3300013104 Bacteria 4017
44 Ga0157369_10004636 3300013105 Bacteria 16151
45 Ga0206354_11383922 3300020081 Bacteria 4017
46 Ga0206353_11822303 3300020082 Bacteria 3309
47 Ga0209676_1001797 3300025292 Bacteria 17981
48 Ga0209050_1000581 3300025298 Bacteria 59224
49 Ga0209050_1001738 3300025298 Bacteria 21673
50 Ga0209257_1000206 3300025304 Bacteria 142184
51 Ga0209257_1000577 3300025304 Bacteria 61710
52 Ga0209257_1000597 3300025304 Bacteria 59900
53 Ga0209257_1001973 3300025304 Bacteria 22086
54 Ga0207696_1009876 3300025711 Bacteria 3534
55 Ga0207713_1007910 3300025735 Bacteria 6195
56 Ga0207682_10000280 3300025893 Bacteria 23250
57 Ga0207657_10007553 3300025919 Bacteria 11143
58 Ga0207657_10010894 3300025919 Bacteria 9049
59 Ga0207649_10000323 3300025920 Bacteria 36350
60 Ga0207681_10002826 3300025923 Bacteria 10991
61 Ga0207659_10012449 3300025926 Bacteria 5414
62 Ga0207687_10038059 3300025927 Bacteria 3285
63 Ga0207644_10016017 3300025931 Bacteria 5040
64 Ga0207690_10000005 3300025932 Bacteria 581199
65 Ga0207690_10010652 3300025932 Bacteria 5478
66 Ga0207706_10017763 3300025933 Bacteria 6406
67 Ga0207706_10092845 3300025933 Bacteria 2654
68 Ga0207691_10043894 3300025940 Bacteria 4117
69 Ga0207661_10049793 3300025944 Bacteria 3336
70 Ga0207658_10001361 3300025986 Bacteria 19123
71 Ga0207677_10000074 3300026023 Bacteria 83468
72 Ga0207639_10253728 3300026041 Bacteria 1535
73 Ga0207678_10033643 3300026067 Bacteria 4464
74 Ga0207678_10051748 3300026067 Bacteria 3545
75 Ga0209813_10000062 3300027866 Bacteria 43852
76 Ga0268266_10000058 3300028379 Bacteria 277346
77 Ga0268266_10000875 3300028379 Bacteria 39015
78 Ga0268266_10003023 3300028379 Bacteria 17281
79 Ga0268264_10005527 3300028381 Bacteria 10718
80 Ga0307405_10013935 3300031731 Bacteria 4306
81 Ga0307405_10032544 3300031731 Bacteria 3083
82 Ga0307405_10039907 3300031731 Bacteria 2841
83 Ga0307413_10032726 3300031824 Bacteria 2951
84 Ga0307413_10047714 3300031824 Bacteria 2555
85 Ga0307410_10044423 3300031852 Bacteria 2951
86 Ga0307410_10056762 3300031852 Bacteria 2664
87 Ga0307410_10140935 3300031852 Bacteria 1784
88 Ga0307406_10009506 3300031901 Bacteria 5456
89 Ga0307412_10009210 3300031911 Bacteria 5659
90 Ga0307412_10013602 3300031911 Bacteria 4777
91 Ga0307412_10087933 3300031911 Bacteria 2166
92 Ga0307416_100023649 3300032002 Bacteria 4464
93 Ga0307416_100191987 3300032002 Bacteria 1927
94 Ga0307416_100278938 3300032002 Bacteria 1646
95 Ga0307414_10000070 3300032004 Bacteria 96231
96 Ga0307414_10000830 3300032004 Bacteria 15738
97 Ga0307414_10015755 3300032004 Bacteria 4573
98 Ga0307411_10023201 3300032005 Bacteria 3670
99 Ga0307411_10035854 3300032005 Bacteria 3102
100 Ga0307415_100013293 3300032126 Bacteria 4800
101 Ga0307415_100054505 3300032126 Bacteria 2730
102 Ga0395899_0020254 3300037312 Bacteria 5047
103 Ga0395900_0017332 3300037418 Bacteria 7353
104 Ga0395898_0015845 3300037466 Bacteria 7724
105 Ga0395901_0059858 3300038443 Bacteria 3962
106 Ga0436365_1302039 3300039437 Bacteria 91581
107 Ga0439461_0000080 3300041410 Bacteria 12573
108 Ga0439466_0016447 3300041411 Bacteria 2673
109 Ga0439465_0003303 3300041413 Bacteria 5268
110 Ga0439431_0000501 3300041997 Bacteria 8283
111 Ga0439442_008461 3300042002 Bacteria 2078
112 Ga0439445_0001257 3300042004 Bacteria 5490
113 Ga0439432_004280 3300042006 Bacteria 5222
114 Ga0439462_0000648 3300042015 Bacteria 7014
115 Ga0439462_0003662 3300042015 Bacteria 3702
116 Ga0439434_0002432 3300042435 Bacteria 5414
117 Ga0495638_0000029 3300046460 Bacteria 330201
118 Ga0495583_0001937 3300046506 Bacteria 19128
119 Ga0495632_0001572 3300046519 Bacteria 18841
120 Ga0495648_0000020 3300046524 Bacteria 254330
121 Ga0495598_0015208 3300046537 Bacteria 1938
122 Ga0495633_0003517 3300046558 Bacteria 10389
123 Ga0495668_0000076 3300046616 Bacteria 161826
124 Ga0495625_0000520 3300046660 Bacteria 56778
125 Ga0495671_0000022 3300046692 Bacteria 255591
126 Ga0495673_0000051 3300047469 Bacteria 255511
127 Ga0496102_0002897 3300048905 Bacteria 14543
128 Ga0496103_0000204 3300048906 Bacteria 59139
129 Ga0496104_0000236 3300048907 Bacteria 48825
130 Ga0496105_0025923 3300048908 Bacteria 4776
131 Ga0496107_0016311 3300048910 Bacteria 5214
132 Ga0496113_0000425 3300048916 Bacteria 20519
133 Ga0496117_0000531 3300048920 Bacteria 62634
134 Ga0496119_0059272 3300048922 Bacteria 2300
135 Ga0496120_0005397 3300048923 Bacteria 10213
136 Ga0496121_0000237 3300048924 Bacteria 118615
137 Ga0496121_0157111 3300048924 Bacteria 1667
138 Ga0496123_0003207 3300048926 Bacteria 18654
139 Ga0496124_0003254 3300048927 Bacteria 20059
140 Ga0496126_0000202 3300048929 Bacteria 132786
141 Ga0501032_0102297 3300049569 Bacteria 1898
142 Ga0501032_0132705 3300049569 Bacteria 1642
143 Ga0501034_0012107 3300049571 Bacteria 8920
144 Ga0501036_0007278 3300049572 Bacteria 9013
145 Ga0501038_0089123 3300049574 Bacteria 2588
146 Ga0501039_0022782 3300049575 Bacteria 4804
147 Ga0501043_0205666 3300049579 Bacteria 1526
148 Ga0501070_0094847 3300049586 Bacteria 2469
149 Ga0501035_0018333 3300049822 Bacteria 6448
150 Ga0501035_0206726 3300049822 Bacteria 1681
151 Ga0501044_0170188 3300049823 Bacteria 2150
152 Ga0501044_0181157 3300049823 Bacteria 2073
153 nmdc:mga03n38_3439_c1 3300050490 Bacteria 5084
154 nmdc:mga06z11_36_c1 3300050494 Bacteria 55905
155 nmdc:mga04h51_692_c1 3300050495 Bacteria 7859
156 nmdc:mga07m45_28516_c1 3300050496 Bacteria 3081
157 nmdc:mga09592_139868_c1 3300050508 Bacteria 2086
158 Ga0500646_0011218 3300053090 Bacteria 2303
159 Ga0500646_0023192 3300053090 Bacteria 1663
160 Ga0500592_000735 3300053116 Bacteria 5365
161 Ga0500658_0030537 3300053134 Bacteria 2102
162 Ga0500568_0001306 3300053139 Bacteria 16359
163 Ga0500568_0003662 3300053139 Bacteria 8451
164 Ga0500604_0000002 3300053151 Bacteria 165603
165 Ga0500616_0000660 3300053153 Bacteria 41164
166 Ga0500627_0000033 3300053158 Bacteria 82993
167 Ga0500587_003832 3300053739 Bacteria 2087

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053134 Ga0500658_0030537 Ga0500658_0030537_227_1477 343
2 3300041410 Ga0439461_0000080 Ga0439461_0000080_7559_8785 347
3 3300041411 Ga0439466_0016447 Ga0439466_0016447_1318_2547 347
4 3300041413 Ga0439465_0003303 Ga0439465_0003303_3197_4423 347
5 3300041997 Ga0439431_0000501 Ga0439431_0000501_2821_4050 347
6 3300042002 Ga0439442_008461 Ga0439442_008461_420_1649 347
7 3300042004 Ga0439445_0001257 Ga0439445_0001257_3037_4266 347
8 3300042006 Ga0439432_004280 Ga0439432_004280_949_2178 347
9 3300042015 Ga0439462_0003662 Ga0439462_0003662_1993_3222 347
10 3300042435 Ga0439434_0002432 Ga0439434_0002432_863_2092 347
11 3300005344 Ga0070661_100000263 Ga0070661_10000026336 351
12 3300025920 Ga0207649_10000323 Ga0207649_100003233 351
13 3300053739 Ga0500587_003832 Ga0500587_003832_619_1908 353
14 3300020081 Ga0206354_11383922 Ga0206354_113839223 354
15 3300020082 Ga0206353_11822303 Ga0206353_118223034 354
16 3300005985 Ga0081539_10008059 Ga0081539_100080594 355
17 3300031824 Ga0307413_10032726 Ga0307413_100327264 357
18 3300032005 Ga0307411_10035854 Ga0307411_100358542 357
19 3300031901 Ga0307406_10009506 Ga0307406_100095062 360
20 3300031911 Ga0307412_10013602 Ga0307412_100136022 360
21 3300032002 Ga0307416_100278938 Ga0307416_1002789382 360
22 3300032126 Ga0307415_100054505 Ga0307415_1000545052 360
23 3300005338 Ga0068868_100000372 Ga0068868_1000003729 361
24 3300026023 Ga0207677_10000074 Ga0207677_1000007471 361
25 3300049569 Ga0501032_0102297 Ga0501032_0102297_444_1700 363
26 3300025919 Ga0207657_10010894 Ga0207657_100108948 364
27 3300003781 Ga0055536_1011963 Ga0055536_10119631 365
28 3300005339 Ga0070660_100000729 Ga0070660_10000072919 365
29 3300005366 Ga0070659_100000099 Ga0070659_10000009917 365
30 3300025292 Ga0209676_1001797 Ga0209676_100179716 365
31 3300025919 Ga0207657_10007553 Ga0207657_100075536 365
32 3300025932 Ga0207690_10000005 Ga0207690_10000005575 365
33 3300046616 Ga0495668_0000076 Ga0495668_0000076_80173_81417 366
34 3300005262 Ga0065165_1003703 Ga0065165_10037035 367
35 3300003791 Ga0055530_10001145 Ga0055530_100011454 368
36 3300003794 Ga0055531_10000525 Ga0055531_1000052521 368
37 3300025298 Ga0209050_1000581 Ga0209050_100058151 368
38 3300025304 Ga0209257_1000577 Ga0209257_100057731 368
39 3300025304 Ga0209257_1000597 Ga0209257_100059731 368
40 3300050490 nmdc:mga03n38_3439_c1 nmdc:mga03n38_3439_c1_770_1984 368
41 3300053153 Ga0500616_0000660 Ga0500616_0000660_39687_40970 368
42 3300031731 Ga0307405_10039907 Ga0307405_100399073 369
43 3300031852 Ga0307410_10056762 Ga0307410_100567622 369
44 3300032002 Ga0307416_100191987 Ga0307416_1001919871 369
45 3300049571 Ga0501034_0012107 Ga0501034_0012107_4008_5222 369
46 3300049586 Ga0501070_0094847 Ga0501070_0094847_975_2189 369
47 3300042015 Ga0439462_0000648 Ga0439462_0000648_587_1837 370
48 3300049572 Ga0501036_0007278 Ga0501036_0007278_6755_8011 370
49 3300049574 Ga0501038_0089123 Ga0501038_0089123_837_2093 370
50 3300049575 Ga0501039_0022782 Ga0501039_0022782_2690_3946 370
51 3300049579 Ga0501043_0205666 Ga0501043_0205666_139_1395 370
52 3300049822 Ga0501035_0018333 Ga0501035_0018333_4437_5693 370
53 3300049823 Ga0501044_0181157 Ga0501044_0181157_524_1780 370
54 iso_pu_bacteria 2928027323 2928027561 371
55 iso_pu_bacteria 2984555340 2984558146 371
56 iso_pu_bacteria 2984564862 2984567486 371
57 iso_pu_bacteria 2993356040 2993358540 371
58 3300003794 Ga0055531_10001717 Ga0055531_1000171713 372
59 3300025304 Ga0209257_1000206 Ga0209257_100020668 372
60 3300025304 Ga0209257_1001973 Ga0209257_100197315 373
61 3300009098 Ga0105245_10060975 Ga0105245_100609752 374
62 3300013105 Ga0157369_10004636 Ga0157369_100046362 374
63 3300025927 Ga0207687_10038059 Ga0207687_100380592 374
64 iso_pu_bacteria 2512564014 2512643912 374
65 iso_pu_bacteria 2852680915 2852684291 375
66 iso_pu_bacteria 2882806704 2882807081 375
67 3300005354 Ga0070675_100132904 Ga0070675_1001329041 376
68 3300025926 Ga0207659_10012449 Ga0207659_100124495 376
69 3300031852 Ga0307410_10140935 Ga0307410_101409352 376
70 3300046537 Ga0495598_0015208 Ga0495598_0015208_126_1382 376
71 3300053090 Ga0500646_0011218 Ga0500646_0011218_518_1762 376
72 3300053090 Ga0500646_0023192 Ga0500646_0023192_24_1301 376
73 3300053139 Ga0500568_0003662 Ga0500568_0003662_1805_3082 376
74 3300053151 Ga0500604_0000002 Ga0500604_0000002_13685_14962 376
75 iso_pu_bacteria 2643221563 2643834277 376
76 iso_pu_bacteria 2643221608 2644055202 376
77 3300005327 Ga0070658_10205331 Ga0070658_102053312 377
78 3300005345 Ga0070692_10062977 Ga0070692_100629771 377
79 3300005355 Ga0070671_100003570 Ga0070671_10000357010 377
80 3300005455 Ga0070663_100003968 Ga0070663_1000039685 377
81 3300005548 Ga0070665_100001786 Ga0070665_10000178612 377
82 3300013104 Ga0157370_10049612 Ga0157370_100496123 377
83 3300025298 Ga0209050_1001738 Ga0209050_100173814 377
84 3300025931 Ga0207644_10016017 Ga0207644_100160174 377
85 3300025944 Ga0207661_10049793 Ga0207661_100497933 377
86 3300026067 Ga0207678_10033643 Ga0207678_100336432 377
87 3300031911 Ga0307412_10087933 Ga0307412_100879331 377
88 3300032004 Ga0307414_10000830 Ga0307414_1000083012 377
89 3300037312 Ga0395899_0020254 Ga0395899_0020254_3322_4581 377
90 3300037418 Ga0395900_0017332 Ga0395900_0017332_5227_6486 377
91 3300037466 Ga0395898_0015845 Ga0395898_0015845_2113_3372 377
92 3300038443 Ga0395901_0059858 Ga0395901_0059858_708_1967 377
93 3300046660 Ga0495625_0000520 Ga0495625_0000520_10753_11991 377
94 3300048924 Ga0496121_0000237 Ga0496121_0000237_76620_77864 377
95 3300053139 Ga0500568_0001306 Ga0500568_0001306_9768_11006 377
96 3300005333 Ga0070677_10000607 Ga0070677_100006079 378
97 3300005366 Ga0070659_100029404 Ga0070659_1000294042 378
98 3300005455 Ga0070663_100007657 Ga0070663_1000076575 378
99 3300005457 Ga0070662_100013890 Ga0070662_1000138903 378
100 3300005457 Ga0070662_100194486 Ga0070662_1001944861 378
101 3300006042 Ga0075368_10000166 Ga0075368_1000016612 378
102 3300006178 Ga0075367_10000165 Ga0075367_100001658 378
103 3300011119 Ga0105246_10000073 Ga0105246_1000007333 378
104 3300013100 Ga0157373_10019790 Ga0157373_100197902 378
105 3300013102 Ga0157371_10149586 Ga0157371_101495862 378
106 3300025893 Ga0207682_10000280 Ga0207682_1000028020 378
107 3300025933 Ga0207706_10017763 Ga0207706_100177634 378
108 3300025933 Ga0207706_10092845 Ga0207706_100928451 378
109 3300026067 Ga0207678_10051748 Ga0207678_100517484 378
110 3300027866 Ga0209813_10000062 Ga0209813_1000006227 378
111 3300031731 Ga0307405_10013935 Ga0307405_100139353 378
112 3300050494 nmdc:mga06z11_36_c1 nmdc:mga06z11_36_c1_20617_21861 378
113 3300050495 nmdc:mga04h51_692_c1 nmdc:mga04h51_692_c1_4602_5846 378
114 3300050496 nmdc:mga07m45_28516_c1 nmdc:mga07m45_28516_c1_854_2098 378
115 3300005366 Ga0070659_100013486 Ga0070659_1000134863 379
116 3300025932 Ga0207690_10010652 Ga0207690_100106524 379
117 3300039437 Ga0436365_1302039 Ga0436365_1302039_80442_81704 379
118 3300005331 Ga0070670_100273856 Ga0070670_1002738561 380
119 3300005544 Ga0070686_100000123 Ga0070686_10000012327 380
120 3300005548 Ga0070665_100000011 Ga0070665_100000011276 380
121 3300006871 Ga0075434_100183272 Ga0075434_1001832722 380
122 3300028379 Ga0268266_10000058 Ga0268266_10000058252 380
123 3300031731 Ga0307405_10032544 Ga0307405_100325441 380
124 3300031824 Ga0307413_10047714 Ga0307413_100477143 380
125 3300031852 Ga0307410_10044423 Ga0307410_100444233 380
126 3300031911 Ga0307412_10009210 Ga0307412_100092104 380
127 3300032002 Ga0307416_100023649 Ga0307416_1000236494 380
128 3300032004 Ga0307414_10015755 Ga0307414_100157554 380
129 3300032005 Ga0307411_10023201 Ga0307411_100232012 380
130 3300032126 Ga0307415_100013293 Ga0307415_1000132934 380
131 3300053116 Ga0500592_000735 Ga0500592_000735_2986_4236 380
132 3300053158 Ga0500627_0000033 Ga0500627_0000033_22846_24096 380
133 3300005353 Ga0070669_100027677 Ga0070669_1000276772 381
134 3300006880 Ga0075429_100137399 Ga0075429_1001373993 381
135 3300025940 Ga0207691_10043894 Ga0207691_100438944 381
136 3300026041 Ga0207639_10253728 Ga0207639_102537282 381
137 3300046460 Ga0495638_0000029 Ga0495638_0000029_3145_4401 381
138 3300046506 Ga0495583_0001937 Ga0495583_0001937_14777_16033 381
139 3300046519 Ga0495632_0001572 Ga0495632_0001572_14753_16009 381
140 3300046524 Ga0495648_0000020 Ga0495648_0000020_3162_4418 381
141 3300046558 Ga0495633_0003517 Ga0495633_0003517_6681_7937 381
142 3300046692 Ga0495671_0000022 Ga0495671_0000022_3231_4487 381
143 3300047469 Ga0495673_0000051 Ga0495673_0000051_251125_252381 381
144 3300005548 Ga0070665_100001478 Ga0070665_10000147826 382
145 3300028379 Ga0268266_10000875 Ga0268266_1000087516 382
146 3300028381 Ga0268264_10005527 Ga0268264_1000552710 382
147 3300032004 Ga0307414_10000070 Ga0307414_1000007029 382
148 3300049569 Ga0501032_0132705 Ga0501032_0132705_200_1459 382
149 3300049822 Ga0501035_0206726 Ga0501035_0206726_151_1410 382
150 3300049823 Ga0501044_0170188 Ga0501044_0170188_304_1563 382
151 3300050508 nmdc:mga09592_139868_c1 nmdc:mga09592_139868_c1_409_1674 384
152 3300002239 JGI24034J26672_10003724 JGI24034J26672_100037242 385
153 3300005289 Ga0065704_10074252 Ga0065704_100742522 385
154 3300005353 Ga0070669_100000148 Ga0070669_1000001486 385
155 3300005367 Ga0070667_100000779 Ga0070667_1000007798 385
156 3300005843 Ga0068860_100050863 Ga0068860_1000508633 385
157 3300025711 Ga0207696_1009876 Ga0207696_10098761 385
158 3300025735 Ga0207713_1007910 Ga0207713_10079102 385
159 3300025923 Ga0207681_10002826 Ga0207681_100028268 385
160 3300025986 Ga0207658_10001361 Ga0207658_100013618 385
161 3300028379 Ga0268266_10003023 Ga0268266_100030235 385
162 3300048927 Ga0496124_0003254 Ga0496124_0003254_15491_16747 385
163 iso_pu_bacteria 2738541275 2738711454 386
164 iso_pu_bacteria 2738541301 2738849879 386
165 iso_pu_bacteria 2738541304 2738865608 386
166 iso_pu_bacteria 2738543022 2739298126 386
167 iso_pu_bacteria 2738543033 2739359804 386
168 iso_pu_bacteria 2928100450 2928103153 386
169 2162886007 SwRhRL2b_contig_3223864 SwRhRL2b_0884.00000060 389
170 3300009177 Ga0105248_10013367 Ga0105248_100133674 389
171 3300048905 Ga0496102_0002897 Ga0496102_0002897_7548_8810 389
172 3300048906 Ga0496103_0000204 Ga0496103_0000204_1611_2873 389
173 3300048907 Ga0496104_0000236 Ga0496104_0000236_40000_41262 389
174 3300048908 Ga0496105_0025923 Ga0496105_0025923_898_2160 389
175 3300048910 Ga0496107_0016311 Ga0496107_0016311_1336_2598 389
176 3300048916 Ga0496113_0000425 Ga0496113_0000425_19163_20425 389
177 3300048920 Ga0496117_0000531 Ga0496117_0000531_7576_8838 389
178 3300048922 Ga0496119_0059272 Ga0496119_0059272_681_1943 389
179 3300048923 Ga0496120_0005397 Ga0496120_0005397_5611_6873 389
180 3300048924 Ga0496121_0157111 Ga0496121_0157111_48_1310 389
181 3300048926 Ga0496123_0003207 Ga0496123_0003207_16623_17885 389
182 3300048929 Ga0496126_0000202 Ga0496126_0000202_7564_8826 389
183 iso_pu_bacteria 2928959182 2928962629 389

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04235

DUF418

Protein of unknown function (DUF418)

260

420

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
8e6m-assembly1.cif.gz_A x-ray structure of the deinococcus radiodurans nramp/mnth divalent transition metal transporter wt in an inward-open, cadmium-bound state 0.1972 14 367
6vbg-assembly1.cif.gz_A lactose permease complex with thiodigalactoside and nanobody 9043 0.1908 14 342
6gwh-assembly1.cif.gz_A outward-facing conformation of a multidrug resistance mate family transporter of the mop superfamily. 0.1895 16 381
7smp-assembly1.cif.gz_A cryoem structure of nkcc1 bu-i 0.1851 14 381
5k3h-assembly2.cif.gz_C crystals structure of acyl-coa oxidase-1 in caenorhabditis elegans, apo form-ii 0.1842 21 368
ID Description Score Start End Superfamily
af_A0A0R0HNR6_5_409_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.2484 15 369 1.20.1740.10
af_A0A1D8PDH1_58_531_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.2372 14 368 1.20.1740.10
af_A0A0R0HNR6_5_409_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.2332 15 369 1.20.1740.10
af_Q0E070_3_350_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.2251 26 364 1.20.1250.20
af_A0A1D8PDH1_58_531_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.2211 14 368 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A7W6FZ59-F1-model_v4 DUF418 domain-containing protein 0.8994 13 384 GO:0016020
AF-A0A7X8RVP6-F1-model_v4 DUF418 domain-containing protein 0.8992 11 380 GO:0016020
AF-A0A5B8S713-F1-model_v4 DUF418 domain-containing protein 0.895 10 383 GO:0016020
AF-A0A7Z0BWG2-F1-model_v4 DUF418 domain-containing protein 0.8939 11 383 GO:0016020
AF-G6E8P5-F1-model_v4 DUF418 domain-containing protein 0.8938 26 382 GO:0016020

Feature Viewer

pLDDT pTM Quality
77.7 0.81 High
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Predicted Structure (AlphaFold2)

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