F279885

General Info

Members Datasets Scaffolds Average Seq Length
182 141 176 173

Family's Representative Sequence

Representative Sequence 3300050492|nmdc:mga0yw44_61665_c1|nmdc:mga0yw44_61665_c1_556_1155
Length 199
Sequence LAERATPPAGTGRPAASPKGGHATSATDTIARRKAPLDTPTDLTPAATRDIAGALTILLADMFALYLKTKNFHWHVSGPHFRDYHLLLDEQGDQIFATTDAIAERVRKIGGTTLRSIGQIGRVQRVLDNDADYVTPLDMLAELREDNKQLTASMRETHALCDEHDDVASASLLENWIDEAERRTWFLFEASRRGFSGES

Samples

Sample ID Description Type Environment
1 2513237141 Bradyrhizobium sp. TV2a.2 Isolate Nodule
2 2874590934 Bradyrhizobium canariense UBMA181 Isolate Nodule
3 2876771140 Bradyrhizobium canariense UBMA192 Isolate Nodule
4 2876818435 Bradyrhizobium canariense UBMA195 Isolate Nodule
5 2879074833 Bradyrhizobium canariense UBMA171 Isolate Nodule
6 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
8 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
30 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
31 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
32 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
33 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
41 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
42 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
43 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
44 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
51 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
52 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
55 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
74 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
75 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
76 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
77 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
78 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
79 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
80 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
81 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
82 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
83 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
84 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
85 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
86 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
87 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
88 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
89 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
92 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
93 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
96 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
97 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
98 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
99 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
100 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
101 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
102 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
103 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
104 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
105 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
106 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
107 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
108 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
111 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
112 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
113 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
116 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
117 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
118 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
119 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
121 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
122 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
123 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
124 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
128 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
131 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
132 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
133 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
134 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
135 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
136 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
137 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
138 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
139 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
140 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
141 8006984368 Bradyrhizobium sp. SRL28 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.15
Metatranscriptomes 0.55
Isolates 3.3

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.44
Nodule 2.75
Rhizoplane 6.59
Rhizosphere 77.47
Stem 0
Stem Tuber 0
Unclassified 2.75

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25405J52794_10007696 3300003911 Bacteria 1993
2 Ga0065704_10093346 3300005289 Bacteria 2602
3 Ga0070683_100244895 3300005329 Bacteria 1705
4 Ga0070670_100063538 3300005331 Bacteria 3169
5 Ga0070689_100352786 3300005340 Bacteria 1234
6 Ga0070661_100163228 3300005344 Bacteria 1688
7 Ga0070668_101122886 3300005347 Bacteria 710
8 Ga0070675_100502912 3300005354 Bacteria 1092
9 Ga0070659_100316353 3300005366 Bacteria 1304
10 Ga0070667_100501956 3300005367 Bacteria 1112
11 Ga0070714_100008259 3300005435 Bacteria 8120
12 Ga0070714_100065792 3300005435 Bacteria 3123
13 Ga0070663_100092016 3300005455 Bacteria 2248
14 Ga0070706_100299399 3300005467 Bacteria 1501
15 Ga0070699_100402266 3300005518 Bacteria 1238
16 Ga0070699_100477821 3300005518 Bacteria 1131
17 Ga0070699_100869443 3300005518 Bacteria 825
18 Ga0070684_100132360 3300005535 Bacteria 2250
19 Ga0070684_101140004 3300005535 Bacteria 733
20 Ga0070697_100180524 3300005536 Bacteria 1789
21 Ga0070665_100152915 3300005548 Bacteria 2310
22 Ga0068855_100313836 3300005563 Bacteria 1734
23 Ga0068859_100862252 3300005617 Bacteria 991
24 Ga0068864_100179696 3300005618 Bacteria 1934
25 Ga0068858_100260909 3300005842 Bacteria 1647
26 Ga0068858_100538365 3300005842 Bacteria 1130
27 Ga0068858_101035939 3300005842 Bacteria 805
28 Ga0068860_100018155 3300005843 Bacteria 6847
29 Ga0081455_10003692 3300005937 Bacteria 17525
30 Ga0081455_10005676 3300005937 Bacteria 13617
31 Ga0081455_10052515 3300005937 Bacteria 3488
32 Ga0081455_10076852 3300005937 Bacteria 2749
33 Ga0081538_10018853 3300005981 Bacteria 5159
34 Ga0081538_10065155 3300005981 Bacteria 2054
35 Ga0081538_10188696 3300005981 Bacteria 869
36 Ga0081540_1131482 3300005983 Bacteria 1021
37 Ga0075363_100135098 3300006048 Bacteria 1385
38 Ga0075364_10200335 3300006051 Bacteria 1353
39 Ga0075364_10354586 3300006051 Bacteria 1000
40 Ga0070712_100008033 3300006175 Bacteria 6620
41 Ga0075367_10077504 3300006178 Bacteria 2007
42 Ga0075369_10047506 3300006186 Bacteria 1851
43 Ga0075369_10162384 3300006186 Bacteria 1024
44 Ga0075428_100427213 3300006844 Bacteria 1420
45 Ga0075433_10157650 3300006852 Bacteria 2020
46 Ga0075434_100197233 3300006871 Bacteria 2033
47 Ga0075434_100701260 3300006871 Bacteria 1030
48 Ga0075429_100549417 3300006880 Bacteria 1012
49 Ga0075436_100614701 3300006914 Bacteria 801
50 Ga0097620_100862292 3300006931 Bacteria 991
51 Ga0075435_100552909 3300007076 Bacteria 997
52 Ga0099794_10008631 3300007265 Bacteria 4242
53 Ga0099794_10057446 3300007265 Bacteria 1885
54 Ga0099794_10081835 3300007265 Bacteria 1593
55 Ga0099794_10111610 3300007265 Bacteria 1370
56 Ga0099795_10007614 3300007788 Bacteria 3034
57 Ga0099795_10043459 3300007788 Bacteria 1608
58 Ga0099795_10044782 3300007788 Bacteria 1589
59 Ga0099795_10048953 3300007788 Bacteria 1532
60 Ga0099795_10131265 3300007788 Bacteria 1011
61 Ga0099795_10162702 3300007788 Bacteria 922
62 Ga0111539_10120807 3300009094 Bacteria 3070
63 Ga0105245_10457320 3300009098 Bacteria 1286
64 Ga0114129_10046521 3300009147 Bacteria 6098
65 Ga0114129_10064690 3300009147 Bacteria 5104
66 Ga0114129_10184445 3300009147 Bacteria 2837
67 Ga0114129_10700982 3300009147 Bacteria 1301
68 Ga0114129_11373888 3300009147 Bacteria 872
69 Ga0114129_11963337 3300009147 Bacteria 708
70 Ga0105243_10808892 3300009148 Bacteria 924
71 Ga0105248_10850892 3300009177 Bacteria 1029
72 Ga0105249_10234287 3300009553 Bacteria 1812
73 Ga0099796_10065871 3300010159 Bacteria 1296
74 Ga0157369_10010995 3300013105 Bacteria 10302
75 Ga0163162_10801399 3300013306 Bacteria 1059
76 Ga0163163_10180967 3300014325 Bacteria 2155
77 Ga0224712_10250806 3300022467 Bacteria 818
78 Ga0207699_10558306 3300025906 Bacteria 831
79 Ga0207684_10224657 3300025910 Bacteria 1620
80 Ga0207693_10037102 3300025915 Bacteria 3841
81 Ga0207650_10054060 3300025925 Bacteria 2977
82 Ga0207664_10019825 3300025929 Bacteria 4977
83 Ga0207644_10036497 3300025931 Bacteria 3451
84 Ga0207690_10443599 3300025932 Bacteria 1042
85 Ga0207670_10343919 3300025936 Bacteria 1179
86 Ga0207691_10586522 3300025940 Bacteria 944
87 Ga0207661_10294938 3300025944 Bacteria 1452
88 Ga0207678_10026432 3300026067 Bacteria 5063
89 Ga0207676_10390268 3300026095 Bacteria 1298
90 Ga0209179_1000997 3300027512 Bacteria 3235
91 Ga0209179_1048974 3300027512 Bacteria 902
92 Ga0209588_1017926 3300027671 Bacteria 2200
93 Ga0209588_1042368 3300027671 Bacteria 1470
94 Ga0207428_10187310 3300027907 Bacteria 1561
95 Ga0268266_10059064 3300028379 Bacteria 3304
96 Ga0268264_10339146 3300028381 Bacteria 1427
97 Ga0268264_10358053 3300028381 Bacteria 1391
98 Ga0265334_10000014 3300028573 Bacteria 154345
99 Ga0307515_10308181 3300028794 Bacteria 1261
100 Ga0265338_10027430 3300028800 Bacteria 5714
101 Ga0265338_10186020 3300028800 Bacteria 1579
102 Ga0265338_10345392 3300028800 Bacteria 1071
103 Ga0265332_10060005 3300031238 Bacteria 1628
104 Ga0265339_10064204 3300031249 Bacteria 1970
105 Ga0265339_10180026 3300031249 Bacteria 1053
106 Ga0307516_10326871 3300031730 Unclassified 1203
107 Ga0307414_10751984 3300032004 Bacteria 886
108 Ga0373943_0483395 3300035170 Bacteria 722
109 Ga0373946_0373179 3300035171 Bacteria 716
110 Ga0373931_0110730 3300035691 Bacteria 1558
111 Ga0373935_1123788 3300035692 Unclassified 585
112 Ga0373927_0083485 3300035695 Bacteria 2071
113 Ga0373933_0929037 3300035724 Bacteria 573
114 Ga0373947_0306881 3300035725 Bacteria 1059
115 Ga0395905_0073692 3300037471 Bacteria 3201
116 Ga0466963_0002035 3300044694 Bacteria 11127
117 Ga0466964_0089688 3300044706 Bacteria 1336
118 Ga0451576_0251674 3300045051 Bacteria 1846
119 Ga0466958_0479468 3300045836 Bacteria 806
120 Ga0466967_0003313 3300045976 Bacteria 10463
121 Ga0495617_048082 3300046452 Bacteria 1420
122 Ga0495629_0262501 3300046459 Bacteria 1187
123 Ga0495638_0006191 3300046460 Bacteria 8741
124 Ga0495638_0592487 3300046460 Bacteria 545
125 Ga0495584_0075830 3300046491 Bacteria 1691
126 Ga0495630_0140859 3300046517 Bacteria 1834
127 Ga0495609_0084936 3300046538 Bacteria 1381
128 Ga0495668_0140638 3300046616 Bacteria 1321
129 Ga0495625_0345760 3300046660 Unclassified 941
130 Ga0495661_0399892 3300046665 Bacteria 668
131 Ga0495657_0428627 3300046675 Bacteria 776
132 Ga0495658_0156306 3300046683 Bacteria 1404
133 Ga0495624_0172845 3300046690 Bacteria 1318
134 Ga0495672_0069777 3300047320 Bacteria 1994
135 Ga0496100_0068746 3300048903 Bacteria 2357
136 Ga0496102_0101715 3300048905 Bacteria 2670
137 Ga0496103_0017604 3300048906 Bacteria 4277
138 Ga0496105_0022861 3300048908 Bacteria 5067
139 Ga0496107_0065740 3300048910 Bacteria 2629
140 Ga0496108_0007614 3300048911 Bacteria 8768
141 Ga0496109_0003032 3300048912 Bacteria 14015
142 Ga0496111_0011397 3300048914 Bacteria 5986
143 Ga0496112_0573185 3300048915 Bacteria 1061
144 Ga0496113_0049199 3300048916 Bacteria 3138
145 Ga0496114_0076668 3300048917 Bacteria 2817
146 Ga0496115_0026733 3300048918 Bacteria 4507
147 Ga0496126_0051879 3300048929 Bacteria 3732
148 Ga0496126_1028134 3300048929 Bacteria 617
149 Ga0501034_0088035 3300049571 Bacteria 3104
150 Ga0501034_0100922 3300049571 Bacteria 2880
151 Ga0501076_1342081 3300049592 Bacteria 588
152 Ga0501249_000274 3300049679 Bacteria 14750
153 nmdc:mga03n38_82690_c1 3300050490 Bacteria 1512
154 nmdc:mga0yw44_460102_c1 3300050492 Bacteria 862
155 nmdc:mga0yw44_61665_c1 3300050492 Bacteria 2302
156 nmdc:mga07m45_10061_c1 3300050496 Bacteria 3504
157 nmdc:mga05p37_12488_c1 3300050507 Bacteria 10141
158 nmdc:mga05p37_94894_c1 3300050507 Bacteria 3675
159 nmdc:mga09592_425564_c1 3300050508 Bacteria 1146
160 nmdc:mga09592_845808_c1 3300050508 Bacteria 772
161 nmdc:mga08y16_828951_c1 3300050511 Bacteria 916
162 nmdc:mga0n895_683075_c1 3300050512 Bacteria 1024
163 nmdc:mga0rr50_30929_c1 3300050513 Bacteria 3795
164 nmdc:mga0sz30_263702_c1 3300050516 Bacteria 767
165 Ga0495619_0033615 3300053085 Bacteria 3331
166 Ga0500651_0002604 3300053093 Bacteria 9589
167 Ga0500641_0115623 3300053096 Bacteria 1155
168 Ga0500641_0118807 3300053096 Bacteria 1139
169 Ga0500641_0136144 3300053096 Bacteria 1060
170 Ga0500618_003683 3300053125 Bacteria 5172
171 Ga0500642_0060266 3300053130 Bacteria 1702
172 Ga0500622_0053577 3300053156 Bacteria 2072
173 Ga0500636_0142740 3300053177 Bacteria 1324
174 Ga0501084_0800505 3300054114 Bacteria 794
175 Ga0501082_0415111 3300060353 Bacteria 1175
176 Ga0466962_0026137 3300061719 Bacteria 2803

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300007788 Ga0099795_10048953 Ga0099795_100489532 159
2 3300048929 Ga0496126_1028134 Ga0496126_1028134_119_601 160
3 iso_pu_bacteria 8006984368 8006993966 160
4 3300027512 Ga0209179_1000997 Ga0209179_10009973 161
5 3300027671 Ga0209588_1042368 Ga0209588_10423681 161
6 3300032004 Ga0307414_10751984 Ga0307414_107519842 162
7 3300009147 Ga0114129_10064690 Ga0114129_100646904 164
8 3300028794 Ga0307515_10308181 Ga0307515_103081811 164
9 3300046452 Ga0495617_048082 Ga0495617_048082_27_521 164
10 3300046460 Ga0495638_0592487 Ga0495638_0592487_40_534 164
11 3300046491 Ga0495584_0075830 Ga0495584_0075830_599_1093 164
12 3300046538 Ga0495609_0084936 Ga0495609_0084936_607_1101 164
13 3300046616 Ga0495668_0140638 Ga0495668_0140638_372_866 164
14 3300050508 nmdc:mga09592_845808_c1 nmdc:mga09592_845808_c1_170_664 164
15 3300037471 Ga0395905_0073692 Ga0395905_0073692_2665_3162 165
16 3300044694 Ga0466963_0002035 Ga0466963_0002035_3385_3885 166
17 3300044706 Ga0466964_0089688 Ga0466964_0089688_345_845 166
18 3300045836 Ga0466958_0479468 Ga0466958_0479468_102_602 166
19 3300045976 Ga0466967_0003313 Ga0466967_0003313_8532_9032 166
20 3300061719 Ga0466962_0026137 Ga0466962_0026137_216_716 166
21 3300005329 Ga0070683_100244895 Ga0070683_1002448952 167
22 3300005344 Ga0070661_100163228 Ga0070661_1001632282 167
23 3300005535 Ga0070684_101140004 Ga0070684_1011400041 167
24 3300005563 Ga0068855_100313836 Ga0068855_1003138361 167
25 3300025944 Ga0207661_10294938 Ga0207661_102949382 167
26 3300046460 Ga0495638_0006191 Ga0495638_0006191_1233_1838 167
27 3300049679 Ga0501249_000274 Ga0501249_000274_6207_6710 167
28 3300053096 Ga0500641_0115623 Ga0500641_0115623_42_566 167
29 3300053096 Ga0500641_0118807 Ga0500641_0118807_514_1017 167
30 3300005347 Ga0070668_101122886 Ga0070668_1011228861 168
31 3300053093 Ga0500651_0002604 Ga0500651_0002604_8501_9007 168
32 3300053130 Ga0500642_0060266 Ga0500642_0060266_1048_1554 168
33 3300053156 Ga0500622_0053577 Ga0500622_0053577_163_669 168
34 3300005455 Ga0070663_100092016 Ga0070663_1000920163 169
35 3300005467 Ga0070706_100299399 Ga0070706_1002993991 169
36 3300005518 Ga0070699_100477821 Ga0070699_1004778212 169
37 3300005536 Ga0070697_100180524 Ga0070697_1001805242 169
38 3300005548 Ga0070665_100152915 Ga0070665_1001529154 169
39 3300005842 Ga0068858_101035939 Ga0068858_1010359391 169
40 3300006048 Ga0075363_100135098 Ga0075363_1001350982 169
41 3300006178 Ga0075367_10077504 Ga0075367_100775042 169
42 3300007265 Ga0099794_10081835 Ga0099794_100818352 169
43 3300014325 Ga0163163_10180967 Ga0163163_101809671 169
44 3300025910 Ga0207684_10224657 Ga0207684_102246572 169
45 3300026067 Ga0207678_10026432 Ga0207678_100264325 169
46 3300028379 Ga0268266_10059064 Ga0268266_100590642 169
47 3300028800 Ga0265338_10345392 Ga0265338_103453922 169
48 3300031238 Ga0265332_10060005 Ga0265332_100600052 169
49 3300031249 Ga0265339_10064204 Ga0265339_100642042 169
50 3300031249 Ga0265339_10180026 Ga0265339_101800261 169
51 3300048929 Ga0496126_0051879 Ga0496126_0051879_1777_2286 169
52 3300050490 nmdc:mga03n38_82690_c1 nmdc:mga03n38_82690_c1_594_1103 169
53 3300050492 nmdc:mga0yw44_460102_c1 nmdc:mga0yw44_460102_c1_325_834 169
54 3300050496 nmdc:mga07m45_10061_c1 nmdc:mga07m45_10061_c1_2611_3120 169
55 iso_pu_bacteria 2513237141 2513893408 169
56 iso_pu_bacteria 2874590934 2874594116 169
57 iso_pu_bacteria 2876771140 2876773656 169
58 iso_pu_bacteria 2876818435 2876824716 169
59 iso_pu_bacteria 2879074833 2879081443 169
60 3300007265 Ga0099794_10008631 Ga0099794_100086313 170
61 3300007788 Ga0099795_10131265 Ga0099795_101312651 170
62 3300010159 Ga0099796_10065871 Ga0099796_100658711 170
63 3300027512 Ga0209179_1048974 Ga0209179_10489741 170
64 3300027671 Ga0209588_1017926 Ga0209588_10179263 170
65 3300007788 Ga0099795_10162702 Ga0099795_101627021 171
66 3300046665 Ga0495661_0399892 Ga0495661_0399892_68_640 171
67 3300049571 Ga0501034_0100922 Ga0501034_0100922_771_1286 171
68 3300060353 Ga0501082_0415111 Ga0501082_0415111_615_1130 171
69 3300005289 Ga0065704_10093346 Ga0065704_100933462 172
70 3300005435 Ga0070714_100065792 Ga0070714_1000657923 172
71 3300005983 Ga0081540_1131482 Ga0081540_11314821 172
72 3300006051 Ga0075364_10200335 Ga0075364_102003351 172
73 3300006175 Ga0070712_100008033 Ga0070712_1000080338 172
74 3300007265 Ga0099794_10057446 Ga0099794_100574463 172
75 3300007265 Ga0099794_10111610 Ga0099794_101116101 172
76 3300007788 Ga0099795_10007614 Ga0099795_100076143 172
77 3300009147 Ga0114129_11963337 Ga0114129_119633372 172
78 3300025915 Ga0207693_10037102 Ga0207693_100371026 172
79 3300035170 Ga0373943_0483395 Ga0373943_0483395_159_683 172
80 3300035171 Ga0373946_0373179 Ga0373946_0373179_51_575 172
81 3300035695 Ga0373927_0083485 Ga0373927_0083485_1296_1820 172
82 3300035724 Ga0373933_0929037 Ga0373933_0929037_10_543 172
83 3300035725 Ga0373947_0306881 Ga0373947_0306881_377_901 172
84 3300046675 Ga0495657_0428627 Ga0495657_0428627_58_624 172
85 3300006880 Ga0075429_100549417 Ga0075429_1005494171 173
86 3300009147 Ga0114129_11373888 Ga0114129_113738881 173
87 3300009148 Ga0105243_10808892 Ga0105243_108088922 173
88 3300031730 Ga0307516_10326871 Ga0307516_103268712 173
89 3300035692 Ga0373935_1123788 Ga0373935_1123788_47_568 173
90 3300046660 Ga0495625_0345760 Ga0495625_0345760_393_914 173
91 3300050507 nmdc:mga05p37_94894_c1 nmdc:mga05p37_94894_c1_665_1186 173
92 3300053125 Ga0500618_003683 Ga0500618_003683_3426_3947 173
93 3300005937 Ga0081455_10003692 Ga0081455_100036929 174
94 3300005937 Ga0081455_10052515 Ga0081455_100525152 174
95 3300006186 Ga0075369_10047506 Ga0075369_100475062 174
96 3300006852 Ga0075433_10157650 Ga0075433_101576502 174
97 3300009147 Ga0114129_10184445 Ga0114129_101844453 174
98 3300013105 Ga0157369_10010995 Ga0157369_100109954 174
99 3300028381 Ga0268264_10358053 Ga0268264_103580532 174
100 3300028800 Ga0265338_10027430 Ga0265338_100274305 174
101 3300028800 Ga0265338_10186020 Ga0265338_101860202 174
102 3300047320 Ga0495672_0069777 Ga0495672_0069777_40_564 174
103 3300049571 Ga0501034_0088035 Ga0501034_0088035_1109_1633 174
104 3300050516 nmdc:mga0sz30_263702_c1 nmdc:mga0sz30_263702_c1_57_581 174
105 3300053096 Ga0500641_0136144 Ga0500641_0136144_77_601 174
106 3300053177 Ga0500636_0142740 Ga0500636_0142740_98_622 174
107 3300005340 Ga0070689_100352786 Ga0070689_1003527862 175
108 3300005617 Ga0068859_100862252 Ga0068859_1008622522 175
109 3300005618 Ga0068864_100179696 Ga0068864_1001796962 175
110 3300005842 Ga0068858_100538365 Ga0068858_1005383652 175
111 3300005843 Ga0068860_100018155 Ga0068860_1000181555 175
112 3300005981 Ga0081538_10018853 Ga0081538_100188532 175
113 3300005981 Ga0081538_10188696 Ga0081538_101886961 175
114 3300006931 Ga0097620_100862292 Ga0097620_1008622921 175
115 3300022467 Ga0224712_10250806 Ga0224712_102508061 175
116 3300025936 Ga0207670_10343919 Ga0207670_103439192 175
117 3300026095 Ga0207676_10390268 Ga0207676_103902681 175
118 3300028381 Ga0268264_10339146 Ga0268264_103391461 175
119 3300054114 Ga0501084_0800505 Ga0501084_0800505_117_644 175
120 3300003911 JGI25405J52794_10007696 JGI25405J52794_100076962 176
121 3300005331 Ga0070670_100063538 Ga0070670_1000635382 176
122 3300005354 Ga0070675_100502912 Ga0070675_1005029122 176
123 3300005366 Ga0070659_100316353 Ga0070659_1003163532 176
124 3300005367 Ga0070667_100501956 Ga0070667_1005019562 176
125 3300005435 Ga0070714_100008259 Ga0070714_1000082598 176
126 3300005518 Ga0070699_100402266 Ga0070699_1004022662 176
127 3300005518 Ga0070699_100869443 Ga0070699_1008694431 176
128 3300005535 Ga0070684_100132360 Ga0070684_1001323603 176
129 3300005842 Ga0068858_100260909 Ga0068858_1002609092 176
130 3300005937 Ga0081455_10005676 Ga0081455_1000567610 176
131 3300005937 Ga0081455_10076852 Ga0081455_100768524 176
132 3300005981 Ga0081538_10065155 Ga0081538_100651552 176
133 3300006051 Ga0075364_10354586 Ga0075364_103545862 176
134 3300006186 Ga0075369_10162384 Ga0075369_101623841 176
135 3300006844 Ga0075428_100427213 Ga0075428_1004272131 176
136 3300006871 Ga0075434_100197233 Ga0075434_1001972332 176
137 3300006871 Ga0075434_100701260 Ga0075434_1007012602 176
138 3300006914 Ga0075436_100614701 Ga0075436_1006147012 176
139 3300007076 Ga0075435_100552909 Ga0075435_1005529092 176
140 3300007788 Ga0099795_10043459 Ga0099795_100434592 176
141 3300007788 Ga0099795_10044782 Ga0099795_100447822 176
142 3300009094 Ga0111539_10120807 Ga0111539_101208074 176
143 3300009098 Ga0105245_10457320 Ga0105245_104573201 176
144 3300009147 Ga0114129_10046521 Ga0114129_100465215 176
145 3300009147 Ga0114129_10700982 Ga0114129_107009822 176
146 3300009177 Ga0105248_10850892 Ga0105248_108508921 176
147 3300009553 Ga0105249_10234287 Ga0105249_102342871 176
148 3300013306 Ga0163162_10801399 Ga0163162_108013992 176
149 3300025906 Ga0207699_10558306 Ga0207699_105583061 176
150 3300025925 Ga0207650_10054060 Ga0207650_100540604 176
151 3300025929 Ga0207664_10019825 Ga0207664_100198253 176
152 3300025931 Ga0207644_10036497 Ga0207644_100364976 176
153 3300025932 Ga0207690_10443599 Ga0207690_104435991 176
154 3300025940 Ga0207691_10586522 Ga0207691_105865221 176
155 3300027907 Ga0207428_10187310 Ga0207428_101873102 176
156 3300028573 Ga0265334_10000014 Ga0265334_10000014134 176
157 3300035691 Ga0373931_0110730 Ga0373931_0110730_633_1163 176
158 3300045051 Ga0451576_0251674 Ga0451576_0251674_1216_1746 176
159 3300046459 Ga0495629_0262501 Ga0495629_0262501_308_838 176
160 3300046517 Ga0495630_0140859 Ga0495630_0140859_379_909 176
161 3300046683 Ga0495658_0156306 Ga0495658_0156306_223_753 176
162 3300046690 Ga0495624_0172845 Ga0495624_0172845_94_624 176
163 3300048903 Ga0496100_0068746 Ga0496100_0068746_1171_1701 176
164 3300048905 Ga0496102_0101715 Ga0496102_0101715_1141_1671 176
165 3300048906 Ga0496103_0017604 Ga0496103_0017604_825_1355 176
166 3300048908 Ga0496105_0022861 Ga0496105_0022861_3134_3664 176
167 3300048910 Ga0496107_0065740 Ga0496107_0065740_570_1100 176
168 3300048911 Ga0496108_0007614 Ga0496108_0007614_774_1304 176
169 3300048912 Ga0496109_0003032 Ga0496109_0003032_466_996 176
170 3300048914 Ga0496111_0011397 Ga0496111_0011397_2501_3031 176
171 3300048915 Ga0496112_0573185 Ga0496112_0573185_317_847 176
172 3300048916 Ga0496113_0049199 Ga0496113_0049199_1643_2173 176
173 3300048917 Ga0496114_0076668 Ga0496114_0076668_2117_2647 176
174 3300048918 Ga0496115_0026733 Ga0496115_0026733_650_1180 176
175 3300049592 Ga0501076_1342081 Ga0501076_1342081_14_550 176
176 3300050492 nmdc:mga0yw44_61665_c1 nmdc:mga0yw44_61665_c1_556_1155 176
177 3300050507 nmdc:mga05p37_12488_c1 nmdc:mga05p37_12488_c1_5901_6431 176
178 3300050508 nmdc:mga09592_425564_c1 nmdc:mga09592_425564_c1_409_939 176
179 3300050511 nmdc:mga08y16_828951_c1 nmdc:mga08y16_828951_c1_194_724 176
180 3300050512 nmdc:mga0n895_683075_c1 nmdc:mga0n895_683075_c1_293_841 176
181 3300050513 nmdc:mga0rr50_30929_c1 nmdc:mga0rr50_30929_c1_547_1095 176
182 3300053085 Ga0495619_0033615 Ga0495619_0033615_421_951 176

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00210

Ferritin

Ferritin-like domain

52

191

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bkc-assembly1.cif.gz_H the x-ray structure of the h43g listeria innocua dps mutant 0.9752 28 164
2bkc-assembly1.cif.gz_F the x-ray structure of the h43g listeria innocua dps mutant 0.9735 28 164
6hx2-assembly1.cif.gz_B the structure of dps from listeria innocua soaked with cobalt 0.9732 28 164
2bk6-assembly1.cif.gz_C the x-ray crystal structure of the listeria innocua h31g dps mutant. 0.9727 28 164
2bkc-assembly1.cif.gz_A the x-ray structure of the h43g listeria innocua dps mutant 0.9725 28 166
ID Description Score Start End Superfamily
6hv1D00 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9749 28 164 1.20.1260.10
1qghA00 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9742 28 164 1.20.1260.10
2bk6C00 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9727 28 164 1.20.1260.10
2c41C01 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9672 23 166 1.20.1260.10
1ji5D00 Mainly Alpha;Up-down Bundle;Ferritin;Ferritin, core subunit, four-helix bundle 0.9651 28 166 1.20.1260.10
ID Description Score Start End GO Terms
AF-A0A5C7EPW1-F1-model_v4 DNA starvation/stationary phase protection protein 0.9928 16 168 GO:0008199
AF-A0A4V2BI91-F1-model_v4 deleted 0.9925 24 168
AF-A0A1H5HVH2-F1-model_v4 deleted 0.9922 24 168
AF-A0A2T4V0N7-F1-model_v4 DNA starvation/stationary phase protection protein 0.9916 15 168 GO:0008199
AF-A0A437M9C2-F1-model_v4 DNA starvation/stationary phase protection protein 0.9902 18 168 GO:0008199

Feature Viewer

pLDDT pTM Quality
91.21 0.84 High
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Predicted Structure (AlphaFold2)

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