F278189

General Info

Members Datasets Scaffolds Average Seq Length
181 129 362 359

Family's Representative Sequence

Representative Sequence 3300053102|Ga0500554_006977|Ga0500554_006977_268_1461
Length 397
Sequence MSFLEPHPSVLLFTGGKSMKQIRSFIGMDVHKATISISVAEDDRGRPVRFIGVIPNTADDIAKMAKRLSKHGELDFCYEASGCGYGIHRQLTALGHKCIVVAPSMIPRKPGERIKTDRRDSEKLAILHRSGDLTPVWVPDITHEALRDLVRARVDASMHLMRARQQLLAFLLRHGRSYPTGKHWTQRHRSWLAGQTFQEHAHGIVFQDYLETVWTAQQRRDALIERISAMVGSWSLGPLVEALRGLRGIDMVSAATFIASTGDLSRFESSRLLMGYLGLVPSEHSSGGTIRRGGITKTGNREARRMLIEAAWSYQYPARIAKEKAEILVRLPKNIRDIAWKAQTRLCTRYRSMVARGKKPTVVVAAIARELAGFIWAIGQEMRLMMAASQQKLCTVA

Samples

Sample ID Description Type Environment
1 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
7 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
8 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
9 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
12 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
17 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
20 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
21 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
22 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
23 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
29 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
30 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
31 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
32 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
33 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
34 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
35 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
44 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
46 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
47 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
48 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
49 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
50 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
53 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
54 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
55 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
56 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
57 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
58 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
59 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
60 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
61 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
62 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
63 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
64 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
65 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
66 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
67 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
68 3300042530 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530L_E14_082316_2047 Metagenome Rhizosphere
69 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
70 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
71 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
72 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
73 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
74 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
75 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
76 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
77 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
78 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
85 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
93 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
94 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
95 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
98 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
99 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
100 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
101 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
102 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
103 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
104 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
105 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
107 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
111 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
112 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
113 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
114 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
115 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
116 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
117 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
118 2871495908 Mesorhizobium sp. M1C.F.Ca.ET.193.01.1.1 Isolate Nodule
119 2878760144 Mesorhizobium sp. M1C.F.Ca.ET.192.01.1.1 Isolate Nodule
120 2878767105 Mesorhizobium sp. M1C.F.Ca.ET.144.01.1.1 Isolate Nodule
121 2903540706 Mesorhizobium sp. M1C.F.Ca.ET.212.01.1.1 Isolate Nodule
122 2937994558 Mesorhizobium sp. M1C.F.Ca.ET.187.01.1.1 Isolate Nodule
123 2958165035 Mesorhizobium sp. M1C.F.Ca.ET.196.01.1.1 Isolate Nodule
124 2961163497 Mesorhizobium sp. M1C.F.Ca.ET.176.01.1.1 Isolate Nodule
125 2965018300 Mesorhizobium sp. M1C.F.Ca.ET.188.01.1.1 Isolate Nodule
126 2968171901 Mesorhizobium sp. M1C.F.Ca.ET.189.01.1.1 Isolate Nodule
127 2970554993 Mesorhizobium sp. M1C.F.Ca.ET.210.01.1.1 Isolate Nodule
128 2987659509 Mesorhizobium sp. M1C.F.Ca.ET.204.01.1.1 Isolate Nodule
129 3004188549 Mesorhizobium sp. M1C.F.Ca.ET.195.01.1.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 90.61
Metatranscriptomes 0
Isolates 9.39

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.1
Nodule 10.5
Rhizoplane 0.55
Rhizosphere 79.01
Stem 0
Stem Tuber 0
Unclassified 11.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500554_006977 3300053102 Bacteria 2572
2 rootH1_10120429 3300003323 Unclassified 1545
3 JGI25404J52841_10011087 3300003659 Bacteria 1941
4 Ga0070668_100031642 3300005347 Bacteria 4026
5 Ga0070668_100164283 3300005347 Bacteria 1803
6 Ga0070668_100204933 3300005347 Bacteria 1620
7 Ga0070674_100225821 3300005356 Unclassified 1459
8 Ga0070713_100229374 3300005436 Bacteria 1687
9 Ga0070711_100147592 3300005439 Bacteria 1770
10 Ga0070711_100214312 3300005439 Bacteria 1493
11 Ga0068867_100199349 3300005459 Bacteria 1602
12 Ga0068855_100281109 3300005563 Bacteria 1848
13 Ga0068852_100364376 3300005616 Bacteria 1414
14 Ga0068860_100243384 3300005843 Bacteria 1750
15 Ga0068862_100216896 3300005844 Bacteria 1731
16 Ga0081455_10159260 3300005937 Bacteria 1732
17 Ga0081540_1000064 3300005983 Bacteria 119429
18 Ga0081540_1026103 3300005983 Bacteria 3342
19 Ga0081540_1030541 3300005983 Bacteria 2982
20 Ga0081539_10032569 3300005985 Bacteria 3190
21 Ga0070717_10162562 3300006028 Bacteria 1937
22 Ga0070712_100240403 3300006175 Bacteria 1442
23 Ga0075428_100225712 3300006844 Bacteria 2022
24 Ga0075430_100132849 3300006846 Bacteria 2074
25 Ga0075431_100350053 3300006847 Bacteria 1485
26 Ga0075433_10252405 3300006852 Bacteria 1565
27 Ga0075429_100046374 3300006880 Bacteria 3781
28 Ga0099794_10087477 3300007265 Bacteria 1544
29 Ga0111539_10153637 3300009094 Bacteria 2694
30 Ga0114129_10009095 3300009147 Bacteria 14157
31 Ga0105237_10141568 3300009545 Bacteria 2399
32 Ga0105249_10052576 3300009553 Bacteria 3720
33 Ga0182008_10039436 3300014497 Bacteria 2360
34 Ga0182008_10044394 3300014497 Bacteria 2210
35 Ga0182008_10073250 3300014497 Bacteria 1685
36 Ga0163161_10163954 3300017792 Bacteria 1696
37 Ga0213872_10029528 3300021361 Bacteria 2514
38 Ga0213872_10058140 3300021361 Bacteria 1750
39 Ga0213872_10059055 3300021361 Bacteria 1736
40 Ga0213874_10042973 3300021377 Bacteria 1359
41 Ga0213876_10125784 3300021384 Unclassified 1361
42 Ga0213876_10130889 3300021384 Bacteria 1333
43 Ga0213875_10033412 3300021388 Bacteria 2429
44 Ga0213871_10031562 3300021441 Unclassified 1384
45 Ga0207692_10063290 3300025898 Bacteria 1922
46 Ga0207663_10150299 3300025916 Bacteria 1633
47 Ga0207700_10157641 3300025928 Bacteria 1882
48 Ga0207664_10231513 3300025929 Bacteria 1606
49 Ga0207669_10285873 3300025937 Bacteria 1246
50 Ga0207665_10160339 3300025939 Unclassified 1617
51 Ga0207708_10132030 3300026075 Bacteria 1953
52 Ga0207683_10078374 3300026121 Bacteria 2928
53 Ga0207428_10137856 3300027907 Bacteria 1865
54 Ga0268264_10266759 3300028381 Bacteria 1598
55 Ga0265330_10068516 3300031235 Unclassified 1537
56 Ga0307405_10321952 3300031731 Bacteria 1181
57 Ga0307413_10112507 3300031824 Bacteria 1825
58 Ga0307406_10125615 3300031901 Bacteria 1791
59 Ga0307407_10037582 3300031903 Bacteria 2676
60 Ga0307409_100254021 3300031995 Bacteria 1609
61 Ga0307414_10014919 3300032004 Bacteria 4677
62 Ga0307414_10236395 3300032004 Bacteria 1510
63 Ga0315911_1000006 3300033442 Bacteria 414563
64 Ga0315911_1000049 3300033442 Bacteria 36480
65 Ga0373936_0070507 3300035113 Bacteria 1440
66 Ga0373943_0084502 3300035170 Bacteria 1633
67 Ga0316574_0037446 3300035398 Bacteria 2975
68 Ga0373925_0200164 3300037068 Bacteria 1588
69 Ga0436364_0023732 3300037853 Bacteria 11271
70 Ga0436364_0030543 3300037853 Bacteria 1260
71 Ga0436364_0699305 3300037853 Bacteria 3316
72 Ga0436364_0745170 3300037853 Bacteria 2715
73 Ga0436365_1156900 3300039437 Bacteria 3144
74 Ga0436365_1293458 3300039437 Bacteria 1315
75 Ga0436365_1305850 3300039437 Unclassified 2623
76 Ga0436360_1189963 3300039438 Unclassified 1455
77 Ga0436361_0123446 3300039447 Bacteria 2105
78 Ga0436361_0554363 3300039447 Bacteria 3702
79 Ga0436361_0881704 3300039447 Bacteria 1976
80 Ga0436361_1145629 3300039447 Bacteria 4346
81 Ga0436363_0076026 3300039450 Bacteria 2173
82 Ga0436363_0268652 3300039450 Unclassified 1768
83 Ga0436363_0355131 3300039450 Bacteria 2142
84 Ga0436363_1279044 3300039450 Bacteria 2501
85 Ga0436362_0777152 3300039453 Bacteria 2432
86 Ga0436362_0857070 3300039453 Bacteria 1793
87 Ga0436362_0906612 3300039453 Bacteria 2498
88 Ga0439431_0008003 3300041997 Bacteria 2368
89 Ga0450900_003291 3300042136 Bacteria 1786
90 Ga0450904_003510 3300042139 Bacteria 1692
91 Ga0450908_015378 3300042184 Unclassified 1371
92 Ga0439460_0011717 3300042461 Bacteria 2265
93 Ga0450916_002029 3300042530 Bacteria 2094
94 Ga0439440_0026501 3300042993 Bacteria 1342
95 Ga0466961_0087188 3300044693 Bacteria 1973
96 Ga0466963_0000114 3300044694 Bacteria 29854
97 Ga0466963_0127020 3300044694 Bacteria 1758
98 Ga0466968_0072052 3300044735 Unclassified 1506
99 Ga0451576_0237589 3300045051 Unclassified 1903
100 Ga0495618_0196833 3300046514 Unclassified 1276
101 Ga0495643_0072119 3300046522 Bacteria 1812
102 Ga0495643_0087940 3300046522 Bacteria 1607
103 Ga0495687_011807 3300047443 Bacteria 4665
104 Ga0495686_0203491 3300047472 Unclassified 1135
105 Ga0496101_0194856 3300048904 Bacteria 1565
106 Ga0501031_0159504 3300049568 Bacteria 1474
107 Ga0501032_0006301 3300049569 Bacteria 8741
108 Ga0501034_0140141 3300049571 Bacteria 2398
109 Ga0501034_0219546 3300049571 Bacteria 1854
110 Ga0501036_0139388 3300049572 Bacteria 2047
111 Ga0501037_0001281 3300049573 Bacteria 18495
112 Ga0501039_0004412 3300049575 Bacteria 10617
113 Ga0501039_0100672 3300049575 Bacteria 2255
114 Ga0501040_0248219 3300049576 Bacteria 1269
115 Ga0501041_0102736 3300049577 Bacteria 1770
116 Ga0501042_0105186 3300049578 Bacteria 2031
117 Ga0501042_0126895 3300049578 Bacteria 1837
118 Ga0501042_0218437 3300049578 Bacteria 1375
119 Ga0501043_0100823 3300049579 Bacteria 2270
120 Ga0501043_0106756 3300049579 Unclassified 2199
121 Ga0501046_0001935 3300049580 Bacteria 19648
122 Ga0501046_0067347 3300049580 Bacteria 2788
123 Ga0501046_0100747 3300049580 Unclassified 2216
124 Ga0501047_0086185 3300049581 Unclassified 3018
125 Ga0501048_0048308 3300049582 Bacteria 3036
126 Ga0501067_0017378 3300049583 Bacteria 3976
127 Ga0501068_0022572 3300049584 Bacteria 3681
128 Ga0501068_0261469 3300049584 Unclassified 1104
129 Ga0501069_0003999 3300049585 Bacteria 7612
130 Ga0501070_0001670 3300049586 Bacteria 19662
131 Ga0501072_0063082 3300049588 Bacteria 2923
132 Ga0501072_0104741 3300049588 Bacteria 2249
133 Ga0501072_0167412 3300049588 Bacteria 1753
134 Ga0501072_0319631 3300049588 Bacteria 1234
135 Ga0501073_0005670 3300049589 Bacteria 9338
136 Ga0501074_0036598 3300049590 Bacteria 3555
137 Ga0501075_0028049 3300049591 Bacteria 4153
138 Ga0501075_0217457 3300049591 Bacteria 1457
139 Ga0501076_0045872 3300049592 Bacteria 3451
140 Ga0501077_0128957 3300049593 Bacteria 1603
141 Ga0501077_0133937 3300049593 Bacteria 1571
142 Ga0501079_0033293 3300049741 Bacteria 3964
143 Ga0501079_0073159 3300049741 Bacteria 2649
144 Ga0501079_0216212 3300049741 Bacteria 1497
145 Ga0501080_0237753 3300049742 Bacteria 1663
146 Ga0501081_0052333 3300049743 Bacteria 2817
147 Ga0501081_0180329 3300049743 Bacteria 1527
148 Ga0501035_0137366 3300049822 Unclassified 2127
149 Ga0501035_0187464 3300049822 Bacteria 1780
150 Ga0501035_0211103 3300049822 Bacteria 1661
151 Ga0501045_0117772 3300049824 Bacteria 1971
152 Ga0501045_0191432 3300049824 Bacteria 1524
153 nmdc:mga05p37_3036_c2 3300050507 Bacteria 14362
154 nmdc:mga0qj67_127814_c1 3300050509 Bacteria 2057
155 nmdc:mga08y16_60578_c1 3300050511 Bacteria 3953
156 nmdc:mga0a205_248967_c1 3300050515 Bacteria 1657
157 Ga0495601_0053620 3300053077 Bacteria 2549
158 Ga0495612_0003111 3300053078 Bacteria 6877
159 Ga0495612_0049046 3300053078 Unclassified 1732
160 Ga0500595_017199 3300053119 Bacteria 2674
161 Ga0501084_0134251 3300054114 Bacteria 2083
162 Ga0501084_0188692 3300054114 Bacteria 1739
163 Ga0501082_0092321 3300060353 Bacteria 2615
164 Ga0501082_0231346 3300060353 Bacteria 1608
165 2513861847 2513237137 Bacteria 9558895
166 2513864328 2513237137 Bacteria 9558895
167 2513864389 2513237137 Bacteria 9558895
168 2617386409 2617270742 Bacteria 6808054
169 2617386641 2617270742 Bacteria 6808054
170 2871497432 2871495908 Bacteria 6935695
171 2878761650 2878760144 Bacteria 6823465
172 2878768617 2878767105 Bacteria 6898628
173 2903542227 2903540706 Bacteria 7062119
174 2937996080 2937994558 Bacteria 7036190
175 2958166552 2958165035 Bacteria 6906348
176 2961165017 2961163497 Bacteria 6901077
177 2965019842 2965018300 Bacteria 6883036
178 2968173417 2968171901 Bacteria 6894245
179 2970556506 2970554993 Bacteria 6814252
180 2987661024 2987659509 Bacteria 6966464
181 3004190074 3004188549 Bacteria 6952365
182 Ga0500554_006977
183 rootH1_10120429
184 JGI25404J52841_10011087
185 Ga0070668_100031642
186 Ga0070668_100164283
187 Ga0070668_100204933
188 Ga0070674_100225821
189 Ga0070713_100229374
190 Ga0070711_100147592
191 Ga0070711_100214312
192 Ga0068867_100199349
193 Ga0068855_100281109
194 Ga0068852_100364376
195 Ga0068860_100243384
196 Ga0068862_100216896
197 Ga0081455_10159260
198 Ga0081540_1000064
199 Ga0081540_1026103
200 Ga0081540_1030541
201 Ga0081539_10032569
202 Ga0070717_10162562
203 Ga0070712_100240403
204 Ga0075428_100225712
205 Ga0075430_100132849
206 Ga0075431_100350053
207 Ga0075433_10252405
208 Ga0075429_100046374
209 Ga0099794_10087477
210 Ga0111539_10153637
211 Ga0114129_10009095
212 Ga0105237_10141568
213 Ga0105249_10052576
214 Ga0182008_10039436
215 Ga0182008_10044394
216 Ga0182008_10073250
217 Ga0163161_10163954
218 Ga0213872_10029528
219 Ga0213872_10058140
220 Ga0213872_10059055
221 Ga0213874_10042973
222 Ga0213876_10125784
223 Ga0213876_10130889
224 Ga0213875_10033412
225 Ga0213871_10031562
226 Ga0207692_10063290
227 Ga0207663_10150299
228 Ga0207700_10157641
229 Ga0207664_10231513
230 Ga0207669_10285873
231 Ga0207665_10160339
232 Ga0207708_10132030
233 Ga0207683_10078374
234 Ga0207428_10137856
235 Ga0268264_10266759
236 Ga0265330_10068516
237 Ga0307405_10321952
238 Ga0307413_10112507
239 Ga0307406_10125615
240 Ga0307407_10037582
241 Ga0307409_100254021
242 Ga0307414_10014919
243 Ga0307414_10236395
244 Ga0315911_1000006
245 Ga0315911_1000049
246 Ga0373936_0070507
247 Ga0373943_0084502
248 Ga0316574_0037446
249 Ga0373925_0200164
250 Ga0436364_0023732
251 Ga0436364_0030543
252 Ga0436364_0699305
253 Ga0436364_0745170
254 Ga0436365_1156900
255 Ga0436365_1293458
256 Ga0436365_1305850
257 Ga0436360_1189963
258 Ga0436361_0123446
259 Ga0436361_0554363
260 Ga0436361_0881704
261 Ga0436361_1145629
262 Ga0436363_0076026
263 Ga0436363_0268652
264 Ga0436363_0355131
265 Ga0436363_1279044
266 Ga0436362_0777152
267 Ga0436362_0857070
268 Ga0436362_0906612
269 Ga0439431_0008003
270 Ga0450900_003291
271 Ga0450904_003510
272 Ga0450908_015378
273 Ga0439460_0011717
274 Ga0450916_002029
275 Ga0439440_0026501
276 Ga0466961_0087188
277 Ga0466963_0000114
278 Ga0466963_0127020
279 Ga0466968_0072052
280 Ga0451576_0237589
281 Ga0495618_0196833
282 Ga0495643_0072119
283 Ga0495643_0087940
284 Ga0495687_011807
285 Ga0495686_0203491
286 Ga0496101_0194856
287 Ga0501031_0159504
288 Ga0501032_0006301
289 Ga0501034_0140141
290 Ga0501034_0219546
291 Ga0501036_0139388
292 Ga0501037_0001281
293 Ga0501039_0004412
294 Ga0501039_0100672
295 Ga0501040_0248219
296 Ga0501041_0102736
297 Ga0501042_0105186
298 Ga0501042_0126895
299 Ga0501042_0218437
300 Ga0501043_0100823
301 Ga0501043_0106756
302 Ga0501046_0001935
303 Ga0501046_0067347
304 Ga0501046_0100747
305 Ga0501047_0086185
306 Ga0501048_0048308
307 Ga0501067_0017378
308 Ga0501068_0022572
309 Ga0501068_0261469
310 Ga0501069_0003999
311 Ga0501070_0001670
312 Ga0501072_0063082
313 Ga0501072_0104741
314 Ga0501072_0167412
315 Ga0501072_0319631
316 Ga0501073_0005670
317 Ga0501074_0036598
318 Ga0501075_0028049
319 Ga0501075_0217457
320 Ga0501076_0045872
321 Ga0501077_0128957
322 Ga0501077_0133937
323 Ga0501079_0033293
324 Ga0501079_0073159
325 Ga0501079_0216212
326 Ga0501080_0237753
327 Ga0501081_0052333
328 Ga0501081_0180329
329 Ga0501035_0137366
330 Ga0501035_0187464
331 Ga0501035_0211103
332 Ga0501045_0117772
333 Ga0501045_0191432
334 nmdc:mga05p37_3036_c2
335 nmdc:mga0qj67_127814_c1
336 nmdc:mga08y16_60578_c1
337 nmdc:mga0a205_248967_c1
338 Ga0495601_0053620
339 Ga0495612_0003111
340 Ga0495612_0049046
341 Ga0500595_017199
342 Ga0501084_0134251
343 Ga0501084_0188692
344 Ga0501082_0092321
345 Ga0501082_0231346
346 2513861847
347 2513864328
348 2513864389
349 2617386409
350 2617386641
351 2871497432
352 2878761650
353 2878768617
354 2903542227
355 2937996080
356 2958166552
357 2961165017
358 2965019842
359 2968173417
360 2970556506
361 2987661024
362 3004190074

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02371

Transposase_20

Transposase IS116/IS110/IS902 family

240

324

0.95

PF01548

DEDD_Tnp_IS110

Transposase

26

175

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
6vyp-assembly2.cif.gz_k crystal structure of the lsd1/corest histone demethylase bound to its nucleosome substrate 0.8279 123 211
2dq3-assembly1.cif.gz_B crystal structure of aq_298 0.7987 125 211
8dtc-assembly1.cif.gz_B crystal structure of glucokinase with bound glucose from acanthamoeba castellanii 0.7289 3 62
6vzz-assembly1.cif.gz_A-2 crystal structure of glucokinase from balamuthia mandrillaris in complex with glucose 0.6761 3 65
5n72-assembly1.cif.gz_A-2 crystal structure of the legionella effector wipa shorter construct 0.6384 123 213
ID Description Score Start End Superfamily
5l3eA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ATP synthase, gamma subunit, helix hairpin domain 0.8886 123 211 1.10.287.80
5lhhA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ATP synthase, gamma subunit, helix hairpin domain 0.8836 123 211 1.10.287.80
2v1dA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ATP synthase, gamma subunit, helix hairpin domain 0.8834 123 211 1.10.287.80
2xajA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ATP synthase, gamma subunit, helix hairpin domain 0.8825 123 211 1.10.287.80
4uvbA03 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ATP synthase, gamma subunit, helix hairpin domain 0.8819 123 211 1.10.287.80
ID Description Score Start End GO Terms
AF-S3I5M8-F1-model_v4 Transposase IS116/IS110/IS902 family protein 0.9824 188 368 GO:0003677
GO:0004803
GO:0006313
GO:0016020
AF-A0A2V7G8T3-F1-model_v4 IS110 family transposase 0.9791 133 369 GO:0003677
GO:0004803
GO:0006313
AF-A0A7W1M648-F1-model_v4 IS110 family transposase 0.976 212 360 GO:0003677
GO:0004803
GO:0006313
AF-A0A2V6Q365-F1-model_v4 Transposase IS116/IS110/IS902 C-terminal domain-containing protein 0.9742 221 366 GO:0003677
GO:0004803
GO:0006313
AF-A0A1I2PHT0-F1-model_v4 Transposase IS116/IS110/IS902 family protein 0.9725 128 360 GO:0003677
GO:0004803
GO:0006313

Map