F277641

General Info

Members Datasets Scaffolds Average Seq Length
181 133 362 354

Family's Representative Sequence

Representative Sequence 3300031889|Ga0326468_10001390|Ga0326468_100013902
Length 379
Sequence MRQAMAALATFSLLAVGGLTACTDDGGDNGNXXXGNVRRAAAGTGKVGVIMPDKKSAQRWISDDPKYLKAAFDAAGVPVDIRNAEGNKETFVSIADDMINSGVRVLMIVNLDSVSGKAVLDKAKAAGIRTIDYDRLTLNGGADYYVSFDNYGVGVLQGQYLKRCLAEKRYKNPVVAELNGSPTDNNATEFKNGYDSVLQPMYDDAAYTKGPDQSVPDWANDEGGVIFEQMLAQQPRIQGVLAANDGLGNAVIEVLRKKKLNGEIPVTGQDATLQGLQNILLGDQCMTVYKPLKPEAESAANLAITLYNGENPSTAELAQQKDPESGGYVPFVKLDPIAIDRTNIDRVIKDGFVEKAALCKGKFKKLCEEAGLLDRKPGN

Samples

Sample ID Description Type Environment
1 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
2 3300003163 Avena fatua rhizosphere microbial communities - H1_Rhizo_Litter_2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
13 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
21 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
36 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
37 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
42 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
43 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
68 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
69 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
70 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
71 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
72 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
73 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
74 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
75 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
76 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
79 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
80 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
81 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
82 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
83 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
84 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
85 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
86 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
87 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
88 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
89 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
90 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
91 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
92 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
93 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
94 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
95 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
96 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
97 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
98 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
99 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
100 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
103 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
104 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
105 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
108 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
111 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
112 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
113 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
114 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
115 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
116 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
117 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
118 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
119 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
120 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
121 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
122 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
123 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300059644 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 38R_AD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300060344 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
129 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
130 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
131 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
132 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
133 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.37
Metatranscriptomes 3.31
Isolates 3.31

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.97
Nodule 0
Rhizoplane 7.18
Rhizosphere 77.35
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0326468_10001390 3300031889 Bacteria 2109
2 Ga0006759J45824_1086760 3300003163 Bacteria 1283
3 JGI25406J46586_10046767 3300003203 Bacteria 1479
4 Ga0058862_12693157 3300004803 Bacteria 1193
5 Ga0070658_10142708 3300005327 Bacteria 2001
6 Ga0070682_100023480 3300005337 Bacteria 3660
7 Ga0068868_100147275 3300005338 Bacteria 1937
8 Ga0070668_100003272 3300005347 Bacteria 11943
9 Ga0070675_100071869 3300005354 Bacteria 2871
10 Ga0070667_100071737 3300005367 Bacteria 2950
11 Ga0070663_100010793 3300005455 Bacteria 5704
12 Ga0070684_100267401 3300005535 Bacteria 1565
13 Ga0068853_100066657 3300005539 Bacteria 3127
14 Ga0068855_100045904 3300005563 Bacteria 5165
15 Ga0070664_100132550 3300005564 Bacteria 2189
16 Ga0068857_100332147 3300005577 Bacteria 1405
17 Ga0068856_100010935 3300005614 Bacteria 8806
18 Ga0068856_100278427 3300005614 Bacteria 1690
19 Ga0068852_100026002 3300005616 Bacteria 4751
20 Ga0068864_100097646 3300005618 Bacteria 2601
21 Ga0068870_10158023 3300005840 Bacteria 1342
22 Ga0068858_100014599 3300005842 Bacteria 7399
23 Ga0068858_100029122 3300005842 Bacteria 5127
24 Ga0068862_100038515 3300005844 Bacteria 4055
25 Ga0081540_1027758 3300005983 Bacteria 3197
26 Ga0081540_1038954 3300005983 Bacteria 2497
27 Ga0081539_10002842 3300005985 Bacteria 23101
28 Ga0081539_10006530 3300005985 Bacteria 11124
29 Ga0081539_10006669 3300005985 Bacteria 10928
30 Ga0081539_10036782 3300005985 Bacteria 2924
31 Ga0097621_100236742 3300006237 Bacteria 1595
32 Ga0075428_100085956 3300006844 Bacteria 3430
33 Ga0075428_100449949 3300006844 Bacteria 1379
34 Ga0075430_100000031 3300006846 Bacteria 73165
35 Ga0075431_100011689 3300006847 Bacteria 8857
36 Ga0075429_100006985 3300006880 Bacteria 9809
37 Ga0075429_100120535 3300006880 Bacteria 2293
38 Ga0075429_100242419 3300006880 Bacteria 1579
39 Ga0105240_10022722 3300009093 Bacteria 8309
40 Ga0114129_10000154 3300009147 Bacteria 73220
41 Ga0114129_10022718 3300009147 Bacteria 8895
42 Ga0114129_10389965 3300009147 Bacteria 1837
43 Ga0105241_10001796 3300009174 Bacteria 16300
44 Ga0105237_10033974 3300009545 Bacteria 5166
45 Ga0105238_10008697 3300009551 Bacteria 10157
46 Ga0157370_10083564 3300013104 Bacteria 3002
47 Ga0157369_10085046 3300013105 Bacteria 3380
48 Ga0157372_10463685 3300013307 Bacteria 1476
49 Ga0163163_10200571 3300014325 Bacteria 2043
50 Ga0163163_10472795 3300014325 Bacteria 1314
51 Ga0157380_10381553 3300014326 Bacteria 1330
52 Ga0157379_10044215 3300014968 Bacteria 3975
53 Ga0157379_10112943 3300014968 Bacteria 2442
54 Ga0157376_10235889 3300014969 Bacteria 1702
55 Ga0224712_10050233 3300022467 Bacteria 1619
56 Ga0207688_10084065 3300025901 Bacteria 1821
57 Ga0207647_10002831 3300025904 Bacteria 13090
58 Ga0207643_10040082 3300025908 Bacteria 2636
59 Ga0207705_10083571 3300025909 Bacteria 2329
60 Ga0207654_10062230 3300025911 Bacteria 2186
61 Ga0207695_10008412 3300025913 Bacteria 12924
62 Ga0207671_10000307 3300025914 Bacteria 72252
63 Ga0207693_10050870 3300025915 Bacteria 3253
64 Ga0207694_10001463 3300025924 Bacteria 20199
65 Ga0207659_10159051 3300025926 Bacteria 1771
66 Ga0207679_10117878 3300025945 Bacteria 2107
67 Ga0207667_10201003 3300025949 Bacteria 2044
68 Ga0207668_10002158 3300025972 Bacteria 11474
69 Ga0207668_10003424 3300025972 Bacteria 9305
70 Ga0207703_10014554 3300026035 Bacteria 6138
71 Ga0207703_10056388 3300026035 Bacteria 3200
72 Ga0207639_10032698 3300026041 Bacteria 3831
73 Ga0207678_10015123 3300026067 Bacteria 6788
74 Ga0207702_10243368 3300026078 Bacteria 1686
75 Ga0207648_10313241 3300026089 Bacteria 1409
76 Ga0207676_10053194 3300026095 Bacteria 3168
77 Ga0207676_10071616 3300026095 Bacteria 2784
78 Ga0207683_10135159 3300026121 Bacteria 2220
79 Ga0207698_10453096 3300026142 Bacteria 1239
80 Ga0268266_10096868 3300028379 Bacteria 2594
81 Ga0268264_10042454 3300028381 Bacteria 3764
82 Ga0307515_10000045 3300028794 Bacteria 301029
83 Ga0307515_10040789 3300028794 Bacteria 7328
84 Ga0307515_10057324 3300028794 Bacteria 5639
85 Ga0307512_10004312 3300030522 Bacteria 15691
86 Ga0307512_10073621 3300030522 Bacteria 2515
87 Ga0307513_10000007 3300031456 Bacteria 451043
88 Ga0307513_10026855 3300031456 Bacteria 6623
89 Ga0307513_10269479 3300031456 Bacteria 1487
90 Ga0307408_100024585 3300031548 Bacteria 4115
91 Ga0307408_100133481 3300031548 Bacteria 1939
92 Ga0307516_10001380 3300031730 Bacteria 33605
93 Ga0307516_10045431 3300031730 Bacteria 4339
94 Ga0307516_10055737 3300031730 Bacteria 3857
95 Ga0307516_10062214 3300031730 Bacteria 3618
96 Ga0307516_10070920 3300031730 Bacteria 3346
97 Ga0307516_10240295 3300031730 Bacteria 1510
98 Ga0307405_10022184 3300031731 Bacteria 3585
99 Ga0307405_10023361 3300031731 Bacteria 3514
100 Ga0307413_10069164 3300031824 Bacteria 2215
101 Ga0307410_10058498 3300031852 Bacteria 2628
102 Ga0307406_10068394 3300031901 Bacteria 2318
103 Ga0307407_10006773 3300031903 Bacteria 5131
104 Ga0307407_10050335 3300031903 Bacteria 2383
105 Ga0307407_10085696 3300031903 Bacteria 1917
106 Ga0307407_10224071 3300031903 Bacteria 1273
107 Ga0307412_10103080 3300031911 Bacteria 2022
108 Ga0307409_100004780 3300031995 Bacteria 7680
109 Ga0307409_100055066 3300031995 Bacteria 3068
110 Ga0307416_100035191 3300032002 Bacteria 3821
111 Ga0307416_100039254 3300032002 Bacteria 3663
112 Ga0307411_10208497 3300032005 Bacteria 1507
113 Ga0307415_100004198 3300032126 Bacteria 7441
114 Ga0307415_100021752 3300032126 Bacteria 3949
115 Ga0307415_100106524 3300032126 Bacteria 2070
116 Ga0307507_10023117 3300033179 Bacteria 6838
117 Ga0373941_0032653 3300035115 Bacteria 1560
118 Ga0373962_0005293 3300035242 Bacteria 3122
119 Ga0395899_0003817 3300037312 Bacteria 11898
120 Ga0395899_0076572 3300037312 Bacteria 2442
121 Ga0395898_0074783 3300037466 Bacteria 3272
122 Ga0439436_0004510 3300041404 Bacteria 4267
123 Ga0439439_0008386 3300041406 Bacteria 2441
124 Ga0451791_0158289 3300041451 Bacteria 1924
125 Ga0451791_1936540 3300041451 Bacteria 2027
126 Ga0451807_2387424 3300041486 Bacteria 1931
127 Ga0451853_0683516 3300041512 Bacteria 5069
128 Ga0439433_0005073 3300041999 Bacteria 2827
129 Ga0439457_000441 3300042014 Bacteria 11973
130 Ga0466969_0098122 3300044656 Bacteria 1381
131 Ga0466961_0046399 3300044693 Bacteria 2779
132 Ga0466961_0110095 3300044693 Bacteria 1733
133 Ga0466970_0001911 3300044765 Bacteria 10073
134 Ga0466970_0120970 3300044765 Bacteria 1434
135 Ga0495629_0047945 3300046459 Bacteria 2996
136 Ga0495606_0030491 3300046507 Bacteria 3767
137 Ga0495630_0295014 3300046517 Bacteria 1239
138 Ga0495632_0037639 3300046519 Bacteria 2454
139 Ga0495668_0001746 3300046616 Bacteria 19942
140 Ga0495625_0000956 3300046660 Bacteria 38568
141 Ga0495581_0098991 3300047315 Bacteria 1694
142 Ga0495593_0158530 3300047673 Bacteria 1143
143 Ga0495626_0000148 3300048091 Bacteria 86787
144 Ga0496108_0000007 3300048911 Bacteria 351492
145 Ga0496108_0000044 3300048911 Bacteria 139925
146 Ga0496108_0004295 3300048911 Bacteria 11472
147 Ga0496108_0036586 3300048911 Bacteria 4085
148 Ga0496108_0126932 3300048911 Bacteria 2191
149 Ga0496109_0071312 3300048912 Bacteria 3189
150 Ga0496110_0061159 3300048913 Bacteria 3323
151 Ga0496111_0023825 3300048914 Bacteria 4300
152 Ga0496111_0036021 3300048914 Bacteria 3538
153 Ga0496113_0180891 3300048916 Bacteria 1671
154 nmdc:mga05p37_230874_c1 3300050507 Bacteria 2230
155 nmdc:mga05p37_46892_c1 3300050507 Bacteria 5314
156 nmdc:mga09592_170561_c1 3300050508 Bacteria 1881
157 nmdc:mga09592_5888_c1 3300050508 Bacteria 10006
158 nmdc:mga0qj67_18395_c1 3300050509 Bacteria 5325
159 nmdc:mga0qj67_403_c2 3300050509 Bacteria 21758
160 nmdc:mga06r32_102362_c1 3300050510 Bacteria 2812
161 Ga0495612_0046101 3300053078 Bacteria 1785
162 Ga0495619_0226736 3300053085 Bacteria 1294
163 Ga0500644_0007765 3300053088 Bacteria 2806
164 Ga0500646_0000214 3300053090 Bacteria 17364
165 Ga0500646_0000272 3300053090 Bacteria 15882
166 Ga0500583_0061342 3300053092 Bacteria 1775
167 Ga0500651_0012315 3300053093 Bacteria 5185
168 Ga0500650_0069033 3300053098 Bacteria 1652
169 Ga0500594_0005880 3300053118 Bacteria 2733
170 Ga0500652_015797 3300053131 Bacteria 2734
171 Ga0500573_0027686 3300053140 Bacteria 3261
172 Ga0501084_0253943 3300054114 Bacteria 1484
173 Ga0587075_007470 3300059644 Bacteria 1372
174 Ga0587079_006794 3300059647 Bacteria 1685
175 Ga0587071_021150 3300060344 Bacteria 1191
176 2753271380 2751185782 Bacteria 11227053
177 2891403338 2891395885 Bacteria 9251614
178 2891556904 2891554331 Bacteria 8812224
179 8001785098 8001781756 Bacteria 9586736
180 8055174354 8055172936 Bacteria 9305943
181 8056056201 8056054917 Bacteria 5736694
182 Ga0326468_10001390
183 Ga0006759J45824_1086760
184 JGI25406J46586_10046767
185 Ga0058862_12693157
186 Ga0070658_10142708
187 Ga0070682_100023480
188 Ga0068868_100147275
189 Ga0070668_100003272
190 Ga0070675_100071869
191 Ga0070667_100071737
192 Ga0070663_100010793
193 Ga0070684_100267401
194 Ga0068853_100066657
195 Ga0068855_100045904
196 Ga0070664_100132550
197 Ga0068857_100332147
198 Ga0068856_100010935
199 Ga0068856_100278427
200 Ga0068852_100026002
201 Ga0068864_100097646
202 Ga0068870_10158023
203 Ga0068858_100014599
204 Ga0068858_100029122
205 Ga0068862_100038515
206 Ga0081540_1027758
207 Ga0081540_1038954
208 Ga0081539_10002842
209 Ga0081539_10006530
210 Ga0081539_10006669
211 Ga0081539_10036782
212 Ga0097621_100236742
213 Ga0075428_100085956
214 Ga0075428_100449949
215 Ga0075430_100000031
216 Ga0075431_100011689
217 Ga0075429_100006985
218 Ga0075429_100120535
219 Ga0075429_100242419
220 Ga0105240_10022722
221 Ga0114129_10000154
222 Ga0114129_10022718
223 Ga0114129_10389965
224 Ga0105241_10001796
225 Ga0105237_10033974
226 Ga0105238_10008697
227 Ga0157370_10083564
228 Ga0157369_10085046
229 Ga0157372_10463685
230 Ga0163163_10200571
231 Ga0163163_10472795
232 Ga0157380_10381553
233 Ga0157379_10044215
234 Ga0157379_10112943
235 Ga0157376_10235889
236 Ga0224712_10050233
237 Ga0207688_10084065
238 Ga0207647_10002831
239 Ga0207643_10040082
240 Ga0207705_10083571
241 Ga0207654_10062230
242 Ga0207695_10008412
243 Ga0207671_10000307
244 Ga0207693_10050870
245 Ga0207694_10001463
246 Ga0207659_10159051
247 Ga0207679_10117878
248 Ga0207667_10201003
249 Ga0207668_10002158
250 Ga0207668_10003424
251 Ga0207703_10014554
252 Ga0207703_10056388
253 Ga0207639_10032698
254 Ga0207678_10015123
255 Ga0207702_10243368
256 Ga0207648_10313241
257 Ga0207676_10053194
258 Ga0207676_10071616
259 Ga0207683_10135159
260 Ga0207698_10453096
261 Ga0268266_10096868
262 Ga0268264_10042454
263 Ga0307515_10000045
264 Ga0307515_10040789
265 Ga0307515_10057324
266 Ga0307512_10004312
267 Ga0307512_10073621
268 Ga0307513_10000007
269 Ga0307513_10026855
270 Ga0307513_10269479
271 Ga0307408_100024585
272 Ga0307408_100133481
273 Ga0307516_10001380
274 Ga0307516_10045431
275 Ga0307516_10055737
276 Ga0307516_10062214
277 Ga0307516_10070920
278 Ga0307516_10240295
279 Ga0307405_10022184
280 Ga0307405_10023361
281 Ga0307413_10069164
282 Ga0307410_10058498
283 Ga0307406_10068394
284 Ga0307407_10006773
285 Ga0307407_10050335
286 Ga0307407_10085696
287 Ga0307407_10224071
288 Ga0307412_10103080
289 Ga0307409_100004780
290 Ga0307409_100055066
291 Ga0307416_100035191
292 Ga0307416_100039254
293 Ga0307411_10208497
294 Ga0307415_100004198
295 Ga0307415_100021752
296 Ga0307415_100106524
297 Ga0307507_10023117
298 Ga0373941_0032653
299 Ga0373962_0005293
300 Ga0395899_0003817
301 Ga0395899_0076572
302 Ga0395898_0074783
303 Ga0439436_0004510
304 Ga0439439_0008386
305 Ga0451791_0158289
306 Ga0451791_1936540
307 Ga0451807_2387424
308 Ga0451853_0683516
309 Ga0439433_0005073
310 Ga0439457_000441
311 Ga0466969_0098122
312 Ga0466961_0046399
313 Ga0466961_0110095
314 Ga0466970_0001911
315 Ga0466970_0120970
316 Ga0495629_0047945
317 Ga0495606_0030491
318 Ga0495630_0295014
319 Ga0495632_0037639
320 Ga0495668_0001746
321 Ga0495625_0000956
322 Ga0495581_0098991
323 Ga0495593_0158530
324 Ga0495626_0000148
325 Ga0496108_0000007
326 Ga0496108_0000044
327 Ga0496108_0004295
328 Ga0496108_0036586
329 Ga0496108_0126932
330 Ga0496109_0071312
331 Ga0496110_0061159
332 Ga0496111_0023825
333 Ga0496111_0036021
334 Ga0496113_0180891
335 nmdc:mga05p37_230874_c1
336 nmdc:mga05p37_46892_c1
337 nmdc:mga09592_170561_c1
338 nmdc:mga09592_5888_c1
339 nmdc:mga0qj67_18395_c1
340 nmdc:mga0qj67_403_c2
341 nmdc:mga06r32_102362_c1
342 Ga0495612_0046101
343 Ga0495619_0226736
344 Ga0500644_0007765
345 Ga0500646_0000214
346 Ga0500646_0000272
347 Ga0500583_0061342
348 Ga0500651_0012315
349 Ga0500650_0069033
350 Ga0500594_0005880
351 Ga0500652_015797
352 Ga0500573_0027686
353 Ga0501084_0253943
354 Ga0587075_007470
355 Ga0587079_006794
356 Ga0587071_021150
357 2753271380
358 2891403338
359 2891556904
360 8001785098
361 8055174354
362 8056056201

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

47

311

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ywh-assembly2.cif.gz_B crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose 0.9589 37 348
4ywh-assembly2.cif.gz_B crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose 0.9468 37 348
4zjp-assembly1.cif.gz_A structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose 0.9045 35 330
2ioy-assembly2.cif.gz_B crystal structure of thermoanaerobacter tengcongensis ribose binding protein 0.9034 37 334
4wwh-assembly2.cif.gz_B crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi-510967) with bound d-galactose 0.9008 35 348
ID Description Score Start End Superfamily
af_P37387_122_310_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9756 135 329 3.50.50.60
af_P37387_129_330_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9712 142 348 3.40.50.2300
af_P37387_122_310_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9655 135 329 3.50.50.60
af_P37387_129_330_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9618 142 348 3.40.50.2300
4ywhB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.944 142 348 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A0R2X4P7-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9718 41 362 GO:0030246
GO:0030288
AF-A0A2J4V088-F1-model_v4 deleted 0.9693 165 348
AF-A0A0R2X4P7-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9688 41 362 GO:0030246
GO:0030288
AF-A0A0A2W3K5-F1-model_v4 D-xylose-binding periplasmic protein 0.968 170 348 GO:0030246
AF-A0A2J4V088-F1-model_v4 deleted 0.959 165 348

Map