F276081

General Info

Members Datasets Scaffolds Average Seq Length
180 89 180 395

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0001403|Ga0451576_0001403_20562_21908
Length 427
Sequence MPEWLFIRATKSASCCRISIPYLLEEKNMRHFFKLASLLLVLAFIASACGTPATQAPAFQIPDIEQGKFNIAAVLIGPHDDGGWSQAHYEGLVYVEKNVPNVHVAYIENVPEGADSEQVFRSLSRKGFNLILGTSFGFMDPMATVAEEFPDITYVHISGYKSNMKNFGNLFGAMEDMKYLAGMLAGSRAKKDGNPKLGYMATFPIPEELRLGNAFMLGAKKTCPECTMDVRWINTWHDPVAEKDAAASLMDAGADVVLTGADTPAVADVAQAKGKWGITYDYVGSCKVERCLTTIYWNWGPIYAKIAKGVADKTYKPGFDYFDADSGSLGLFGFMEGQTMTKGTSDLPEADIKMVKDTLAAMLAGKFTRFDVFAGPIKDNKGKEIVPAGQKFEQADLDQFPPGAPGLACKYCMFWWADGITAELPKQ

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
11 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
12 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
15 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
16 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
17 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
20 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
28 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
29 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
34 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
35 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
36 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
37 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
49 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
50 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
51 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
52 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
53 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
54 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
55 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
56 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
57 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
58 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
59 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
61 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
62 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
64 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
65 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
66 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
67 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
68 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
69 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
70 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
71 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
74 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
77 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
78 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
79 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
82 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
83 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
84 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
89 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.78
Metatranscriptomes 7.22
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.22
Rhizosphere 96.11
Stem 0
Stem Tuber 0
Unclassified 1.67

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_118770 2162886007 Bacteria 9793
2 Ga0065704_10070708 3300005289 Bacteria 17249
3 Ga0065704_10079214 3300005289 Bacteria 4225
4 Ga0065704_10113830 3300005289 Bacteria 1904
5 Ga0065707_10000473 3300005295 Bacteria 34805
6 Ga0065707_10082394 3300005295 Bacteria 15723
7 Ga0065707_10088511 3300005295 Unclassified 4638
8 Ga0065707_10115065 3300005295 Unclassified 2276
9 Ga0068869_100078863 3300005334 Bacteria 2453
10 Ga0070675_100106869 3300005354 Bacteria 2363
11 Ga0070700_100010685 3300005441 Bacteria 5072
12 Ga0070708_100042476 3300005445 Bacteria 3991
13 Ga0070678_100022268 3300005456 Bacteria 4194
14 Ga0070706_100238234 3300005467 Bacteria 1699
15 Ga0070707_100039002 3300005468 Bacteria 4539
16 Ga0070707_100108349 3300005468 Bacteria 2694
17 Ga0070698_100026924 3300005471 Bacteria 5979
18 Ga0070698_100029054 3300005471 Bacteria 5738
19 Ga0070698_100128797 3300005471 Bacteria 2487
20 Ga0070698_100316227 3300005471 Unclassified 1492
21 Ga0070686_100122628 3300005544 Bacteria 1786
22 Ga0070704_100074935 3300005549 Bacteria 2470
23 Ga0070702_100008122 3300005615 Bacteria 5071
24 Ga0068859_100057809 3300005617 Bacteria 3906
25 Ga0068864_100080284 3300005618 Bacteria 2857
26 Ga0068870_10028313 3300005840 Bacteria 2813
27 Ga0068863_100036697 3300005841 Bacteria 4668
28 Ga0068858_100199640 3300005842 Unclassified 1891
29 Ga0068862_100119397 3300005844 Unclassified 2323
30 Ga0081455_10132710 3300005937 Bacteria 1945
31 Ga0081539_10004605 3300005985 Bacteria 15042
32 Ga0081539_10059462 3300005985 Bacteria 2104
33 Ga0075428_100003392 3300006844 Bacteria 17418
34 Ga0075428_100039956 3300006844 Bacteria 5163
35 Ga0075430_100044026 3300006846 Bacteria 3775
36 Ga0075430_100045866 3300006846 Bacteria 3691
37 Ga0075431_100006507 3300006847 Bacteria 11595
38 Ga0075431_100038997 3300006847 Bacteria 4894
39 Ga0075433_10028220 3300006852 Bacteria 4770
40 Ga0075434_100053871 3300006871 Bacteria 3997
41 Ga0075434_100282675 3300006871 Unclassified 1679
42 Ga0075429_100008692 3300006880 Bacteria 8837
43 Ga0075429_100182934 3300006880 Bacteria 1836
44 Ga0097620_100057811 3300006931 Bacteria 3906
45 Ga0111539_10010754 3300009094 Bacteria 11518
46 Ga0114129_10001371 3300009147 Bacteria 32742
47 Ga0114129_10025418 3300009147 Bacteria 8391
48 Ga0114129_10030608 3300009147 Bacteria 7614
49 Ga0114129_10106095 3300009147 Bacteria 3881
50 Ga0114129_10244544 3300009147 Bacteria 2411
51 Ga0105243_10031498 3300009148 Bacteria 4089
52 Ga0105243_10067423 3300009148 Bacteria 2881
53 Ga0105249_10010493 3300009553 Bacteria 8138
54 Ga0105246_10043682 3300011119 Bacteria 3042
55 Ga0157375_10155779 3300013308 Bacteria 2423
56 Ga0157377_10073191 3300014745 Bacteria 1985
57 Ga0207660_10027580 3300025917 Bacteria 3877
58 Ga0207646_10079250 3300025922 Bacteria 2936
59 Ga0207670_10104883 3300025936 Bacteria 2025
60 Ga0207689_10072803 3300025942 Bacteria 2823
61 Ga0207712_10248136 3300025961 Bacteria 1437
62 Ga0207703_10112895 3300026035 Unclassified 2322
63 Ga0207708_10033640 3300026075 Bacteria 3896
64 Ga0207708_10038971 3300026075 Bacteria 3620
65 Ga0207674_10158251 3300026116 Bacteria 2220
66 Ga0207674_10178585 3300026116 Bacteria 2075
67 Ga0207675_100063352 3300026118 Bacteria 3454
68 Ga0268265_10077372 3300028380 Unclassified 2613
69 Ga0307408_100024857 3300031548 Bacteria 4096
70 Ga0316579_10001808 3300031691 Bacteria 7888
71 Ga0316579_10027987 3300031691 Unclassified 2564
72 Ga0316579_10044799 3300031691 Bacteria 2061
73 Ga0316579_10054296 3300031691 Bacteria 1878
74 Ga0316579_10066300 3300031691 Bacteria 1704
75 Ga0316576_10000793 3300031727 Bacteria 15891
76 Ga0316576_10005993 3300031727 Bacteria 7509
77 Ga0316576_10007595 3300031727 Bacteria 6840
78 Ga0316576_10011273 3300031727 Bacteria 5850
79 Ga0316576_10018677 3300031727 Bacteria 4738
80 Ga0316576_10019252 3300031727 Bacteria 4676
81 Ga0316576_10023723 3300031727 Bacteria 4277
82 Ga0316578_10003471 3300031728 Bacteria 7219
83 Ga0316578_10006625 3300031728 Bacteria 5736
84 Ga0316578_10012728 3300031728 Bacteria 4441
85 Ga0316578_10020203 3300031728 Bacteria 3677
86 Ga0316577_10017207 3300031733 Bacteria 3989
87 Ga0316577_10017659 3300031733 Bacteria 3941
88 Ga0316577_10024758 3300031733 Bacteria 3338
89 Ga0316577_10044550 3300031733 Unclassified 2482
90 Ga0307413_10012384 3300031824 Bacteria 4244
91 Ga0307410_10017379 3300031852 Bacteria 4319
92 Ga0307412_10044024 3300031911 Bacteria 2911
93 Ga0307409_100025527 3300031995 Bacteria 4147
94 Ga0307416_100180379 3300032002 Bacteria 1978
95 Ga0307415_100006712 3300032126 Bacteria 6233
96 Ga0316585_10004085 3300032137 Bacteria 4050
97 Ga0316593_10002803 3300032168 Bacteria 4219
98 Ga0316593_10048945 3300032168 Bacteria 1424
99 Ga0316593_10051389 3300032168 Bacteria 1393
100 Ga0316592_1000812 3300033524 Unclassified 4670
101 Ga0316586_1008053 3300033527 Unclassified 1552
102 Ga0316588_1000360 3300033528 Bacteria 5900
103 Ga0316588_1011568 3300033528 Bacteria 1885
104 Ga0316588_1013270 3300033528 Bacteria 1785
105 Ga0316588_1022525 3300033528 Bacteria 1440
106 Ga0316588_1023890 3300033528 Bacteria 1404
107 Ga0316596_1000550 3300033541 Bacteria 6513
108 Ga0316596_1001996 3300033541 Bacteria 4282
109 Ga0316596_1028601 3300033541 Bacteria 1441
110 Ga0316574_0000953 3300035398 Bacteria 12936
111 Ga0316574_0073855 3300035398 Bacteria 2157
112 Ga0316582_0000717 3300036647 Bacteria 13150
113 Ga0316582_0005521 3300036647 Bacteria 6525
114 Ga0316582_0010906 3300036647 Bacteria 5002
115 Ga0316582_0026513 3300036647 Bacteria 3490
116 Ga0316582_0079905 3300036647 Bacteria 2133
117 Ga0316582_0097886 3300036647 Unclassified 1939
118 Ga0316582_0118101 3300036647 Bacteria 1772
119 Ga0316582_0174595 3300036647 Bacteria 1460
120 Ga0316582_0178349 3300036647 Bacteria 1445
121 Ga0316582_0201707 3300036647 Bacteria 1357
122 Ga0316584_0003472 3300036712 Bacteria 10248
123 Ga0316584_0009915 3300036712 Bacteria 6633
124 Ga0316584_0010633 3300036712 Bacteria 6440
125 Ga0316584_0011351 3300036712 Bacteria 6256
126 Ga0316584_0024957 3300036712 Bacteria 4380
127 Ga0316584_0030741 3300036712 Bacteria 3968
128 Ga0316584_0049912 3300036712 Bacteria 3127
129 Ga0316584_0059407 3300036712 Bacteria 2863
130 Ga0316584_0158357 3300036712 Bacteria 1683
131 Ga0316584_0168884 3300036712 Unclassified 1624
132 Ga0316584_0229091 3300036712 Bacteria 1363
133 Ga0316581_0000962 3300037588 Bacteria 6141
134 Ga0316581_0002563 3300037588 Bacteria 4375
135 Ga0316581_0008471 3300037588 Unclassified 2799
136 Ga0316581_0010337 3300037588 Bacteria 2585
137 Ga0400484_19593 3300038725 Bacteria 10600
138 Ga0400490_03772 3300038726 Bacteria 3927
139 Ga0451853_0721458 3300041512 Bacteria 2866
140 Ga0450920_002992 3300042122 Bacteria 2909
141 Ga0451577_0010566 3300042876 Bacteria 8804
142 Ga0451577_0091286 3300042876 Bacteria 2719
143 Ga0451577_0142959 3300042876 Bacteria 2151
144 Ga0451577_0189477 3300042876 Bacteria 1855
145 Ga0453683_0000330 3300044673 Bacteria 58324
146 Ga0453683_0010216 3300044673 Bacteria 6229
147 Ga0453684_0000840 3300044712 Bacteria 103623
148 Ga0453684_0002687 3300044712 Bacteria 42317
149 Ga0453684_0002950 3300044712 Bacteria 39892
150 Ga0453684_0010771 3300044712 Bacteria 15518
151 Ga0453684_0015452 3300044712 Bacteria 12070
152 Ga0453684_0063140 3300044712 Unclassified 4740
153 Ga0453684_0203626 3300044712 Bacteria 2305
154 Ga0453684_0302332 3300044712 Bacteria 1818
155 Ga0453684_0364805 3300044712 Bacteria 1625
156 Ga0451576_0000009 3300045051 Bacteria 712666
157 Ga0451576_0001403 3300045051 Bacteria 41355
158 Ga0451576_0008446 3300045051 Bacteria 12091
159 Ga0451576_0023191 3300045051 Bacteria 6724
160 Ga0451576_0023548 3300045051 Bacteria 6666
161 Ga0451576_0198000 3300045051 Unclassified 2098
162 Ga0495647_0040980 3300046681 Bacteria 1762
163 Ga0496108_0071988 3300048911 Bacteria 2917
164 Ga0496109_0042989 3300048912 Bacteria 4095
165 Ga0496109_0078467 3300048912 Bacteria 3041
166 Ga0496112_0012116 3300048915 Bacteria 7911
167 Ga0501036_0273597 3300049572 Unclassified 1414
168 Ga0501071_0004787 3300049587 Bacteria 8619
169 Ga0501072_0253242 3300049588 Bacteria 1402
170 Ga0501075_0008290 3300049591 Bacteria 7244
171 Ga0501045_0183840 3300049824 Unclassified 1557
172 nmdc:mga05p37_104082_c1 3300050507 Bacteria 3493
173 nmdc:mga05p37_1663_c1 3300050507 Bacteria 25834
174 nmdc:mga05p37_29482_c1 3300050507 Bacteria 6696
175 nmdc:mga05p37_37521_c1 3300050507 Bacteria 5942
176 nmdc:mga09592_13183_c1 3300050508 Bacteria 6748
177 nmdc:mga09592_133661_c1 3300050508 Bacteria 2136
178 nmdc:mga06r32_11649_c1 3300050510 Bacteria 7915
179 nmdc:mga0n895_402054_c1 3300050512 Bacteria 1385
180 Ga0530510_0203448 3300061734 Unclassified 1471

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009147 Ga0114129_10244544 Ga0114129_102445442 337
2 3300042876 Ga0451577_0189477 Ga0451577_0189477_650_1717 338
3 3300038725 Ga0400484_19593 Ga0400484_19593_7228_8667 343
4 3300038726 Ga0400490_03772 Ga0400490_03772_72_1511 343
5 3300044712 Ga0453684_0302332 Ga0453684_0302332_31_1131 348
6 3300036712 Ga0316584_0229091 Ga0316584_0229091_232_1344 351
7 3300005467 Ga0070706_100238234 Ga0070706_1002382341 353
8 3300026075 Ga0207708_10038971 Ga0207708_100389712 354
9 3300042876 Ga0451577_0091286 Ga0451577_0091286_465_1742 354
10 3300036712 Ga0316584_0168884 Ga0316584_0168884_160_1422 355
11 3300036712 Ga0316584_0011351 Ga0316584_0011351_249_1535 358
12 3300005289 Ga0065704_10113830 Ga0065704_101138302 360
13 3300005334 Ga0068869_100078863 Ga0068869_1000788632 360
14 3300009094 Ga0111539_10010754 Ga0111539_1001075411 360
15 3300031548 Ga0307408_100024857 Ga0307408_1000248573 360
16 3300031727 Ga0316576_10011273 Ga0316576_100112733 360
17 3300031995 Ga0307409_100025527 Ga0307409_1000255274 360
18 3300032126 Ga0307415_100006712 Ga0307415_1000067125 360
19 3300042876 Ga0451577_0010566 Ga0451577_0010566_2679_3977 361
20 3300048912 Ga0496109_0078467 Ga0496109_0078467_1012_2289 361
21 3300005471 Ga0070698_100128797 Ga0070698_1001287972 362
22 3300005549 Ga0070704_100074935 Ga0070704_1000749352 362
23 3300031691 Ga0316579_10027987 Ga0316579_100279872 362
24 3300031727 Ga0316576_10005993 Ga0316576_100059932 362
25 3300031728 Ga0316578_10012728 Ga0316578_100127281 362
26 3300031733 Ga0316577_10044550 Ga0316577_100445502 362
27 3300033528 Ga0316588_1022525 Ga0316588_10225251 362
28 3300036712 Ga0316584_0003472 Ga0316584_0003472_8063_9325 362
29 3300033528 Ga0316588_1023890 Ga0316588_10238901 363
30 3300036647 Ga0316582_0010906 Ga0316582_0010906_2744_3991 363
31 3300041512 Ga0451853_0721458 Ga0451853_0721458_83_1360 363
32 3300044712 Ga0453684_0010771 Ga0453684_0010771_3470_4720 363
33 3300044712 Ga0453684_0015452 Ga0453684_0015452_9627_10874 364
34 3300044712 Ga0453684_0364805 Ga0453684_0364805_42_1343 364
35 3300005468 Ga0070707_100039002 Ga0070707_1000390022 365
36 3300005471 Ga0070698_100026924 Ga0070698_1000269244 365
37 3300005985 Ga0081539_10004605 Ga0081539_100046054 365
38 3300006844 Ga0075428_100003392 Ga0075428_1000033925 365
39 3300006846 Ga0075430_100044026 Ga0075430_1000440261 365
40 3300006846 Ga0075430_100045866 Ga0075430_1000458663 365
41 3300006880 Ga0075429_100008692 Ga0075429_1000086922 365
42 3300009147 Ga0114129_10001371 Ga0114129_1000137122 365
43 3300009147 Ga0114129_10025418 Ga0114129_100254185 365
44 3300025922 Ga0207646_10079250 Ga0207646_100792502 365
45 3300026116 Ga0207674_10158251 Ga0207674_101582512 365
46 3300031824 Ga0307413_10012384 Ga0307413_100123842 365
47 3300031852 Ga0307410_10017379 Ga0307410_100173792 365
48 3300031911 Ga0307412_10044024 Ga0307412_100440242 365
49 3300033541 Ga0316596_1001996 Ga0316596_10019963 365
50 3300044673 Ga0453683_0000330 Ga0453683_0000330_39135_40373 365
51 3300044712 Ga0453684_0000840 Ga0453684_0000840_79584_80981 365
52 3300044712 Ga0453684_0002687 Ga0453684_0002687_12384_13694 365
53 3300044712 Ga0453684_0203626 Ga0453684_0203626_940_2229 365
54 3300045051 Ga0451576_0008446 Ga0451576_0008446_10773_12011 365
55 3300045051 Ga0451576_0198000 Ga0451576_0198000_175_1401 365
56 3300049572 Ga0501036_0273597 Ga0501036_0273597_148_1386 365
57 3300049588 Ga0501072_0253242 Ga0501072_0253242_66_1301 365
58 3300050507 nmdc:mga05p37_1663_c1 nmdc:mga05p37_1663_c1_4834_6156 365
59 3300050507 nmdc:mga05p37_29482_c1 nmdc:mga05p37_29482_c1_1567_2778 365
60 3300050508 nmdc:mga09592_13183_c1 nmdc:mga09592_13183_c1_4210_5421 365
61 3300050508 nmdc:mga09592_133661_c1 nmdc:mga09592_133661_c1_370_1581 365
62 3300005445 Ga0070708_100042476 Ga0070708_1000424762 366
63 3300005841 Ga0068863_100036697 Ga0068863_1000366974 366
64 3300006844 Ga0075428_100039956 Ga0075428_1000399563 366
65 3300006847 Ga0075431_100038997 Ga0075431_1000389972 366
66 3300006880 Ga0075429_100182934 Ga0075429_1001829341 366
67 3300009147 Ga0114129_10106095 Ga0114129_101060952 366
68 3300009148 Ga0105243_10067423 Ga0105243_100674233 366
69 3300031691 Ga0316579_10044799 Ga0316579_100447992 366
70 3300031691 Ga0316579_10054296 Ga0316579_100542961 366
71 3300031727 Ga0316576_10000793 Ga0316576_100007938 366
72 3300031727 Ga0316576_10007595 Ga0316576_100075951 366
73 3300031727 Ga0316576_10018677 Ga0316576_100186772 366
74 3300031727 Ga0316576_10023723 Ga0316576_100237234 366
75 3300031728 Ga0316578_10003471 Ga0316578_100034712 366
76 3300031728 Ga0316578_10006625 Ga0316578_100066253 366
77 3300031733 Ga0316577_10017659 Ga0316577_100176591 366
78 3300032168 Ga0316593_10002803 Ga0316593_100028034 366
79 3300033524 Ga0316592_1000812 Ga0316592_10008122 366
80 3300033527 Ga0316586_1008053 Ga0316586_10080531 366
81 3300033528 Ga0316588_1000360 Ga0316588_10003604 366
82 3300033528 Ga0316588_1011568 Ga0316588_10115682 366
83 3300033528 Ga0316588_1013270 Ga0316588_10132702 366
84 3300033541 Ga0316596_1000550 Ga0316596_10005502 366
85 3300035398 Ga0316574_0000953 Ga0316574_0000953_10932_12218 366
86 3300036647 Ga0316582_0026513 Ga0316582_0026513_1129_2415 366
87 3300036647 Ga0316582_0097886 Ga0316582_0097886_153_1439 366
88 3300036647 Ga0316582_0118101 Ga0316582_0118101_83_1396 366
89 3300036647 Ga0316582_0178349 Ga0316582_0178349_39_1247 366
90 3300036647 Ga0316582_0201707 Ga0316582_0201707_131_1339 366
91 3300036712 Ga0316584_0010633 Ga0316584_0010633_1870_3156 366
92 3300036712 Ga0316584_0024957 Ga0316584_0024957_2603_3811 366
93 3300037588 Ga0316581_0008471 Ga0316581_0008471_460_1746 366
94 3300037588 Ga0316581_0010337 Ga0316581_0010337_504_1817 366
95 3300045051 Ga0451576_0001403 Ga0451576_0001403_20562_21908 366
96 3300050507 nmdc:mga05p37_104082_c1 nmdc:mga05p37_104082_c1_1026_2252 366
97 3300005289 Ga0065704_10079214 Ga0065704_100792142 367
98 3300005295 Ga0065707_10082394 Ga0065707_1008239410 367
99 3300005615 Ga0070702_100008122 Ga0070702_1000081225 367
100 3300005985 Ga0081539_10059462 Ga0081539_100594622 367
101 3300006847 Ga0075431_100006507 Ga0075431_10000650710 367
102 3300006871 Ga0075434_100282675 Ga0075434_1002826752 367
103 3300011119 Ga0105246_10043682 Ga0105246_100436822 367
104 3300026118 Ga0207675_100063352 Ga0207675_1000633523 367
105 3300032002 Ga0307416_100180379 Ga0307416_1001803792 367
106 3300036647 Ga0316582_0174595 Ga0316582_0174595_108_1310 367
107 3300037588 Ga0316581_0002563 Ga0316581_0002563_1968_3170 367
108 3300044712 Ga0453684_0063140 Ga0453684_0063140_1610_2854 367
109 3300045051 Ga0451576_0023548 Ga0451576_0023548_932_2176 367
110 3300049587 Ga0501071_0004787 Ga0501071_0004787_7073_8335 367
111 3300049591 Ga0501075_0008290 Ga0501075_0008290_127_1389 367
112 3300049824 Ga0501045_0183840 Ga0501045_0183840_277_1539 367
113 3300050510 nmdc:mga06r32_11649_c1 nmdc:mga06r32_11649_c1_881_2176 367
114 3300061734 Ga0530510_0203448 Ga0530510_0203448_94_1356 367
115 2162886007 SwRhRL2b_contig_118770 SwRhRL2b_0754.00005710 368
116 3300005289 Ga0065704_10070708 Ga0065704_100707084 368
117 3300005295 Ga0065707_10000473 Ga0065707_100004732 368
118 3300005295 Ga0065707_10088511 Ga0065707_100885111 368
119 3300005295 Ga0065707_10115065 Ga0065707_101150652 368
120 3300005354 Ga0070675_100106869 Ga0070675_1001068692 368
121 3300005441 Ga0070700_100010685 Ga0070700_1000106853 368
122 3300005456 Ga0070678_100022268 Ga0070678_1000222682 368
123 3300005468 Ga0070707_100108349 Ga0070707_1001083492 368
124 3300005471 Ga0070698_100029054 Ga0070698_1000290544 368
125 3300005471 Ga0070698_100316227 Ga0070698_1003162271 368
126 3300005544 Ga0070686_100122628 Ga0070686_1001226281 368
127 3300005617 Ga0068859_100057809 Ga0068859_1000578092 368
128 3300005618 Ga0068864_100080284 Ga0068864_1000802842 368
129 3300005840 Ga0068870_10028313 Ga0068870_100283131 368
130 3300005842 Ga0068858_100199640 Ga0068858_1001996401 368
131 3300005844 Ga0068862_100119397 Ga0068862_1001193971 368
132 3300005937 Ga0081455_10132710 Ga0081455_101327102 368
133 3300006852 Ga0075433_10028220 Ga0075433_100282203 368
134 3300006871 Ga0075434_100053871 Ga0075434_1000538713 368
135 3300006931 Ga0097620_100057811 Ga0097620_1000578112 368
136 3300009147 Ga0114129_10030608 Ga0114129_100306082 368
137 3300009148 Ga0105243_10031498 Ga0105243_100314982 368
138 3300009553 Ga0105249_10010493 Ga0105249_100104935 368
139 3300013308 Ga0157375_10155779 Ga0157375_101557792 368
140 3300014745 Ga0157377_10073191 Ga0157377_100731912 368
141 3300025917 Ga0207660_10027580 Ga0207660_100275802 368
142 3300025936 Ga0207670_10104883 Ga0207670_101048832 368
143 3300025942 Ga0207689_10072803 Ga0207689_100728032 368
144 3300025961 Ga0207712_10248136 Ga0207712_102481361 368
145 3300026035 Ga0207703_10112895 Ga0207703_101128951 368
146 3300026075 Ga0207708_10033640 Ga0207708_100336403 368
147 3300026116 Ga0207674_10178585 Ga0207674_101785852 368
148 3300028380 Ga0268265_10077372 Ga0268265_100773723 368
149 3300031691 Ga0316579_10001808 Ga0316579_100018085 368
150 3300031691 Ga0316579_10066300 Ga0316579_100663002 368
151 3300031727 Ga0316576_10019252 Ga0316576_100192523 368
152 3300031728 Ga0316578_10020203 Ga0316578_100202031 368
153 3300031733 Ga0316577_10017207 Ga0316577_100172073 368
154 3300031733 Ga0316577_10024758 Ga0316577_100247582 368
155 3300032137 Ga0316585_10004085 Ga0316585_100040852 368
156 3300032168 Ga0316593_10048945 Ga0316593_100489451 368
157 3300032168 Ga0316593_10051389 Ga0316593_100513891 368
158 3300033541 Ga0316596_1028601 Ga0316596_10286011 368
159 3300035398 Ga0316574_0073855 Ga0316574_0073855_650_1861 368
160 3300036647 Ga0316582_0000717 Ga0316582_0000717_4444_5655 368
161 3300036647 Ga0316582_0005521 Ga0316582_0005521_3024_4235 368
162 3300036647 Ga0316582_0079905 Ga0316582_0079905_412_1623 368
163 3300036712 Ga0316584_0009915 Ga0316584_0009915_2907_4118 368
164 3300036712 Ga0316584_0030741 Ga0316584_0030741_376_1587 368
165 3300036712 Ga0316584_0049912 Ga0316584_0049912_228_1439 368
166 3300036712 Ga0316584_0059407 Ga0316584_0059407_192_1457 368
167 3300036712 Ga0316584_0158357 Ga0316584_0158357_69_1370 368
168 3300037588 Ga0316581_0000962 Ga0316581_0000962_3693_4904 368
169 3300042122 Ga0450920_002992 Ga0450920_002992_159_1436 368
170 3300042876 Ga0451577_0142959 Ga0451577_0142959_147_1379 368
171 3300044673 Ga0453683_0010216 Ga0453683_0010216_4906_6135 368
172 3300044712 Ga0453684_0002950 Ga0453684_0002950_25652_26959 368
173 3300045051 Ga0451576_0000009 Ga0451576_0000009_386791_388059 368
174 3300045051 Ga0451576_0023191 Ga0451576_0023191_5191_6423 368
175 3300046681 Ga0495647_0040980 Ga0495647_0040980_216_1478 368
176 3300048911 Ga0496108_0071988 Ga0496108_0071988_585_1847 368
177 3300048912 Ga0496109_0042989 Ga0496109_0042989_2390_3652 368
178 3300048915 Ga0496112_0012116 Ga0496112_0012116_2732_3994 368
179 3300050507 nmdc:mga05p37_37521_c1 nmdc:mga05p37_37521_c1_2769_3992 368
180 3300050512 nmdc:mga0n895_402054_c1 nmdc:mga0n895_402054_c1_35_1258 368

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02608

Bmp

ABC transporter substrate-binding protein PnrA-like

68

353

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6pi5-assembly4.cif.gz_D the evolving story of atzt, a periplasmic binding protein 0.8558 25 361
6pi5-assembly4.cif.gz_D the evolving story of atzt, a periplasmic binding protein 0.8438 25 361
3s99-assembly1.cif.gz_A crystal structure of a basic membrane lipoprotein from brucella melitensis, iodide soak 0.8398 25 364
3s99-assembly1.cif.gz_A crystal structure of a basic membrane lipoprotein from brucella melitensis, iodide soak 0.8374 25 364
6shu-assembly1.cif.gz_A borrelia burgdorferi bmpd nucleoside binding protein bound to adenosine 0.8059 22 308
ID Description Score Start End Superfamily
3s99A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8416 125 364 3.40.50.2300
2fqwA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8356 24 113 3.40.50.2300
3s99A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8232 25 257 3.40.50.2300
3s99A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.8098 125 364 3.40.50.2300
4ry8A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.753 26 120 3.40.50.2300
ID Description Score Start End GO Terms
AF-X1G5B2-F1-model_v4 ABC transporter substrate-binding protein PnrA-like domain-containing protein 0.9727 124 344 GO:0005886
AF-A0A1W9V2M7-F1-model_v4 ABC transporter substrate-binding protein PnrA-like domain-containing protein 0.9508 169 367 GO:0005886
AF-A0A101IEY1-F1-model_v4 Putative basic membrane lipoprotein 0.9492 19 366 GO:0005886
AF-A0A1W9V2M7-F1-model_v4 ABC transporter substrate-binding protein PnrA-like domain-containing protein 0.9462 169 367 GO:0005886
AF-A0A3M1BLI9-F1-model_v4 BMP family ABC transporter substrate-binding protein 0.9442 30 368 GO:0005886

Feature Viewer

pLDDT pTM Quality
87.52 0.85 High
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Predicted Structure (AlphaFold2)

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