F275999

General Info

Members Datasets Scaffolds Average Seq Length
180 146 360 441

Family's Representative Sequence

Representative Sequence 3300041413|Ga0439465_0000914|Ga0439465_0000914_1308_2717
Length 469
Sequence VSGGTSPDRQDHKDKALNATPLTSPDDSLARLERLTVLSQRLLERAAAHGATQAEVSCSEETGLNVNVRLGAVETVESTRDRGIGVTVYFGQRKGSASTADLREESLEATVAQACAIARYTEDDDAAGLADAARMAHEFPDLDVWHPWVLDTDHAVDLAMACEAAGRDADARIENSDGASVGSGESLAVYANSHGFFGRERDTQHTIGCALIAGQGDGMQRDGWYSTALSHLDLQTPEVIGRIAAERTVSRLQPRSVSTGEYPVLFAAEVARSLIGHLLGAVSGGALYRRASFLLDHAGKQIFPSWFAIEELPHLRRGLRSSAFDAEGVATTRSHLVRDGVLQRYLLGSYSARKLGLSSTGNAGGVHNLQVKANAGGFDSLLGGMTRGLLVTELMGQGVNGVTGDYSRGAAGFWVENGAISHPVDGITVAGNLKDIFNRIDAVGTDVDPRSHVGVGSILIGRMTVAGED

Samples

Sample ID Description Type Environment
1 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
5 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
6 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
16 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
23 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
32 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
45 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
47 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
48 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
71 3300028016 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 Metagenome Rhizosphere
72 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300030878 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
75 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
77 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
78 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
79 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
80 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
81 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
82 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
88 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
89 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
90 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
91 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
92 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
93 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
94 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
95 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
96 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
97 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
98 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
99 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
100 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
101 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
102 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
105 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
106 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
107 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
108 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
109 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
110 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
111 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
112 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
113 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
114 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
115 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
116 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
117 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
122 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
123 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
124 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
125 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
126 3300049762 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E11_A_4_control Metagenome Rhizosphere
127 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
128 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
129 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
130 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
131 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
132 2643221559 Lysobacter sp. Root559 Isolate Unclassified
133 2643221573 Lysobacter sp. Root604 Isolate Unclassified
134 2643221579 Pseudoxanthomonas sp. Root630 Isolate Unclassified
135 2643221581 Pseudoxanthomonas sp. Root65 Isolate Unclassified
136 2643221586 Lysobacter sp. Root667 Isolate Unclassified
137 2643221612 Lysobacter sp. Root76 Isolate Unclassified
138 2643221695 Lysobacter sp. Root494 Isolate Unclassified
139 2643221720 Lysobacter sp. Root916 Isolate Unclassified
140 2643221727 Lysobacter sp. Root96 Isolate Unclassified
141 2643221728 Lysobacter sp. Root983 Isolate Unclassified
142 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
143 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
144 2923516293 Pseudoxanthomonas mexicana SLBN-89 Isolate Rhizosphere
145 8001522603 Methylomicrobium sp. RS1 Isolate Unclassified
146 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.56
Metatranscriptomes 1.11
Isolates 8.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.67
Nodule 0
Rhizoplane 4.44
Rhizosphere 65.56
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439465_0000914 3300041413 Bacteria 9330
2 SwRhRL2b_contig_1310218 2162886007 Bacteria 3012
3 JGI25406J46586_10011326 3300003203 Bacteria 3917
4 Ga0055524_1014127 3300003775 Bacteria 2975
5 Ga0055536_1004540 3300003781 Bacteria 7056
6 Ga0055536_1020189 3300003781 Bacteria 2066
7 Ga0055530_10000990 3300003791 Bacteria 22766
8 Ga0055531_10002148 3300003794 Bacteria 13471
9 Ga0065704_10000605 3300005289 Bacteria 18366
10 Ga0070683_100056299 3300005329 Bacteria 3651
11 Ga0070666_10015646 3300005335 Bacteria 4841
12 Ga0068868_100160233 3300005338 Bacteria 1858
13 Ga0070668_100012437 3300005347 Bacteria 6339
14 Ga0070673_100093386 3300005364 Bacteria 2463
15 Ga0070667_100001144 3300005367 Bacteria 24083
16 Ga0068867_100065713 3300005459 Bacteria 2700
17 Ga0070696_100000540 3300005546 Bacteria 24036
18 Ga0070665_100043075 3300005548 Bacteria 4538
19 Ga0068855_100001965 3300005563 Bacteria 25542
20 Ga0068855_100027573 3300005563 Bacteria 6794
21 Ga0068855_100049627 3300005563 Bacteria 4949
22 Ga0068856_100178435 3300005614 Bacteria 2136
23 Ga0068852_100024275 3300005616 Bacteria 4897
24 Ga0068859_100092795 3300005617 Bacteria 3070
25 Ga0068861_100064411 3300005719 Bacteria 2820
26 Ga0068861_100163131 3300005719 Bacteria 1840
27 Ga0068863_100104738 3300005841 Bacteria 2691
28 Ga0068858_100006978 3300005842 Bacteria 10968
29 Ga0081539_10000011 3300005985 Bacteria 461887
30 Ga0070712_100126673 3300006175 Bacteria 1930
31 Ga0097621_100066329 3300006237 Bacteria 2972
32 Ga0068871_100025555 3300006358 Bacteria 4597
33 Ga0075434_100245062 3300006871 Bacteria 1812
34 Ga0075434_100296257 3300006871 Bacteria 1638
35 Ga0097620_100092799 3300006931 Bacteria 3070
36 Ga0075435_100043183 3300007076 Bacteria 3608
37 Ga0099795_10000148 3300007788 Bacteria 11732
38 Ga0105240_10025816 3300009093 Bacteria 7715
39 Ga0111539_10002131 3300009094 Bacteria 26474
40 Ga0105247_10008112 3300009101 Bacteria 6415
41 Ga0105241_10017852 3300009174 Bacteria 5218
42 Ga0105242_10002113 3300009176 Bacteria 15667
43 Ga0105248_10039808 3300009177 Bacteria 5267
44 Ga0105248_10120268 3300009177 Bacteria 2963
45 Ga0105238_10136025 3300009551 Bacteria 2435
46 Ga0105032_101801 3300009979 Bacteria 1940
47 Ga0157370_10005687 3300013104 Bacteria 13936
48 Ga0163162_10076252 3300013306 Bacteria 3414
49 Ga0163163_10069854 3300014325 Bacteria 3497
50 Ga0157379_10029490 3300014968 Bacteria 4878
51 Ga0209673_1006641 3300025273 Bacteria 5525
52 Ga0209130_1015713 3300025284 Bacteria 1854
53 Ga0209675_1002842 3300025291 Bacteria 8609
54 Ga0209676_1001970 3300025292 Bacteria 16366
55 Ga0209676_1004041 3300025292 Bacteria 8444
56 Ga0209676_1006348 3300025292 Bacteria 5859
57 Ga0209676_1014700 3300025292 Bacteria 2928
58 Ga0209676_1025331 3300025292 Bacteria 1904
59 Ga0209676_1026140 3300025292 Bacteria 1860
60 Ga0209025_1012189 3300025294 Bacteria 5547
61 Ga0209564_1015167 3300025295 Bacteria 3153
62 Ga0209564_1017950 3300025295 Bacteria 2724
63 Ga0209758_1028410 3300025297 Bacteria 2366
64 Ga0209050_1000579 3300025298 Bacteria 59347
65 Ga0209050_1016661 3300025298 Bacteria 2989
66 Ga0209256_1001557 3300025299 Bacteria 22673
67 Ga0209256_1005089 3300025299 Bacteria 7808
68 Ga0209256_1016252 3300025299 Bacteria 2548
69 Ga0209257_1000349 3300025304 Bacteria 95064
70 Ga0209257_1001412 3300025304 Bacteria 28656
71 Ga0209257_1001905 3300025304 Bacteria 22543
72 Ga0209257_1004320 3300025304 Bacteria 11150
73 Ga0209257_1016840 3300025304 Bacteria 2923
74 Ga0207656_10004154 3300025321 Bacteria 5035
75 Ga0207710_10005865 3300025900 Bacteria 5267
76 Ga0207695_10045693 3300025913 Bacteria 4647
77 Ga0207662_10092373 3300025918 Bacteria 1863
78 Ga0207649_10140254 3300025920 Bacteria 1653
79 Ga0207694_10099604 3300025924 Bacteria 2302
80 Ga0207664_10056562 3300025929 Bacteria 3115
81 Ga0207686_10003353 3300025934 Bacteria 8600
82 Ga0207711_10035427 3300025941 Bacteria 4230
83 Ga0207667_10029567 3300025949 Bacteria 5940
84 Ga0207651_10062007 3300025960 Bacteria 2604
85 Ga0207658_10000131 3300025986 Bacteria 80909
86 Ga0207703_10016740 3300026035 Bacteria 5720
87 Ga0207675_100105151 3300026118 Bacteria 2661
88 Ga0207675_100215049 3300026118 Bacteria 1850
89 Ga0207698_10007973 3300026142 Bacteria 6671
90 Ga0207428_10002942 3300027907 Bacteria 16869
91 Ga0265354_1000408 3300028016 Bacteria 7566
92 Ga0268266_10144630 3300028379 Bacteria 2136
93 Ga0268264_10105720 3300028381 Bacteria 2456
94 Ga0265770_1001732 3300030878 Bacteria 2984
95 Ga0265760_10002154 3300031090 Bacteria 5762
96 Ga0316579_10000601 3300031691 Bacteria 12102
97 Ga0265314_10067031 3300031711 Bacteria 2420
98 Ga0307516_10000081 3300031730 Bacteria 105223
99 Ga0316577_10005405 3300031733 Bacteria 6699
100 Ga0307413_10001631 3300031824 Bacteria 8692
101 Ga0307410_10046535 3300031852 Bacteria 2894
102 Ga0307406_10015039 3300031901 Bacteria 4468
103 Ga0307412_10105306 3300031911 Bacteria 2003
104 Ga0307416_100109276 3300032002 Bacteria 2432
105 Ga0307416_100115268 3300032002 Bacteria 2379
106 Ga0307414_10017504 3300032004 Bacteria 4387
107 Ga0307414_10036552 3300032004 Bacteria 3280
108 Ga0307411_10007150 3300032005 Bacteria 5655
109 Ga0307411_10042264 3300032005 Bacteria 2907
110 Ga0316585_10000146 3300032137 Bacteria 13871
111 Ga0316582_0000256 3300036647 Bacteria 17848
112 Ga0316584_0000091 3300036712 Bacteria 36297
113 Ga0373925_0108318 3300037068 Bacteria 2144
114 Ga0400488_50827 3300038741 Bacteria 4031
115 Ga0400486_28155 3300038742 Bacteria 181974
116 Ga0400483_234687 3300039062 Bacteria 2043
117 Ga0400489_48508 3300039093 Bacteria 1800
118 Ga0400487_34211 3300039110 Bacteria 1862
119 Ga0400487_37173 3300039110 Bacteria 37804
120 Ga0436365_0298064 3300039437 Bacteria 1848
121 Ga0436365_1392330 3300039437 Bacteria 2772
122 Ga0439436_0009522 3300041404 Bacteria 2979
123 Ga0439465_0003657 3300041413 Bacteria 5013
124 Ga0439433_0008788 3300041999 Bacteria 2196
125 Ga0439445_0010571 3300042004 Bacteria 2186
126 Ga0439432_003041 3300042006 Bacteria 6244
127 Ga0439449_0000782 3300042007 Bacteria 12261
128 Ga0439449_0001988 3300042007 Bacteria 8036
129 Ga0439449_0007750 3300042007 Bacteria 4077
130 Ga0439449_0008307 3300042007 Bacteria 3949
131 Ga0451577_0000105 3300042876 Bacteria 184360
132 Ga0453684_0000811 3300044712 Bacteria 106411
133 Ga0495610_0026326 3300046512 Bacteria 3107
134 Ga0495656_0005597 3300046615 Bacteria 4344
135 Ga0495636_0000804 3300047318 Bacteria 11553
136 Ga0496101_0035982 3300048904 Bacteria 3505
137 Ga0496104_0008615 3300048907 Bacteria 9071
138 Ga0496104_0034170 3300048907 Bacteria 4739
139 Ga0496105_0000580 3300048908 Bacteria 24291
140 Ga0496107_0072383 3300048910 Bacteria 2506
141 Ga0496111_0069661 3300048914 Bacteria 2558
142 Ga0496114_0002650 3300048917 Bacteria 13655
143 Ga0496115_0023212 3300048918 Bacteria 4813
144 Ga0496124_0000032 3300048927 Bacteria 332524
145 Ga0496126_0028867 3300048929 Bacteria 5278
146 Ga0501290_000849 3300049513 Bacteria 4479
147 Ga0501034_0000316 3300049571 Bacteria 85497
148 Ga0501034_0006923 3300049571 Bacteria 12119
149 Ga0501043_0009878 3300049579 Bacteria 7482
150 Ga0501047_0002045 3300049581 Bacteria 19289
151 Ga0501047_0213887 3300049581 Bacteria 1785
152 Ga0501070_0000471 3300049586 Bacteria 36618
153 Ga0501073_0001887 3300049589 Bacteria 15613
154 Ga0501074_0002794 3300049590 Bacteria 12215
155 Ga0501225_0009417 3300049705 Bacteria 2782
156 Ga0501080_0004491 3300049742 Bacteria 12431
157 Ga0501080_0079755 3300049742 Bacteria 3043
158 Ga0501083_0002506 3300049744 Bacteria 12606
159 Ga0501265_000473 3300049762 Bacteria 4232
160 nmdc:mga0k408_7428_c1 3300050493 Bacteria 5851
161 nmdc:mga08y16_3032_c1 3300050511 Bacteria 17340
162 nmdc:mga0n895_118158_c1 3300050512 Bacteria 2671
163 nmdc:mga0n895_72938_c1 3300050512 Bacteria 3407
164 nmdc:mga08x19_4536_c1 3300050514 Bacteria 8233
165 Ga0500556_0000313 3300053104 Bacteria 36728
166 2643816221 2643221559 Bacteria 4424915
167 2643879571 2643221573 Bacteria 4784121
168 2643905647 2643221579 Bacteria 4443405
169 2643913223 2643221581 Bacteria 3893603
170 2643939094 2643221586 Bacteria 4446529
171 2644077165 2643221612 Bacteria 4361984
172 2644528739 2643221695 Bacteria 3441323
173 2644662820 2643221720 Bacteria 4694283
174 2644694608 2643221727 Bacteria 4415595
175 2644698225 2643221728 Bacteria 4797149
176 2842783517 2842780639 Bacteria 4337790
177 2894416106 2894414249 Bacteria 4405451
178 2923517752 2923516293 Bacteria 3716336
179 8001525372 8001522603 Bacteria 4726425
180 8002871620 8002869464 Bacteria 3588529
181 Ga0439465_0000914
182 SwRhRL2b_contig_1310218
183 JGI25406J46586_10011326
184 Ga0055524_1014127
185 Ga0055536_1004540
186 Ga0055536_1020189
187 Ga0055530_10000990
188 Ga0055531_10002148
189 Ga0065704_10000605
190 Ga0070683_100056299
191 Ga0070666_10015646
192 Ga0068868_100160233
193 Ga0070668_100012437
194 Ga0070673_100093386
195 Ga0070667_100001144
196 Ga0068867_100065713
197 Ga0070696_100000540
198 Ga0070665_100043075
199 Ga0068855_100001965
200 Ga0068855_100027573
201 Ga0068855_100049627
202 Ga0068856_100178435
203 Ga0068852_100024275
204 Ga0068859_100092795
205 Ga0068861_100064411
206 Ga0068861_100163131
207 Ga0068863_100104738
208 Ga0068858_100006978
209 Ga0081539_10000011
210 Ga0070712_100126673
211 Ga0097621_100066329
212 Ga0068871_100025555
213 Ga0075434_100245062
214 Ga0075434_100296257
215 Ga0097620_100092799
216 Ga0075435_100043183
217 Ga0099795_10000148
218 Ga0105240_10025816
219 Ga0111539_10002131
220 Ga0105247_10008112
221 Ga0105241_10017852
222 Ga0105242_10002113
223 Ga0105248_10039808
224 Ga0105248_10120268
225 Ga0105238_10136025
226 Ga0105032_101801
227 Ga0157370_10005687
228 Ga0163162_10076252
229 Ga0163163_10069854
230 Ga0157379_10029490
231 Ga0209673_1006641
232 Ga0209130_1015713
233 Ga0209675_1002842
234 Ga0209676_1001970
235 Ga0209676_1004041
236 Ga0209676_1006348
237 Ga0209676_1014700
238 Ga0209676_1025331
239 Ga0209676_1026140
240 Ga0209025_1012189
241 Ga0209564_1015167
242 Ga0209564_1017950
243 Ga0209758_1028410
244 Ga0209050_1000579
245 Ga0209050_1016661
246 Ga0209256_1001557
247 Ga0209256_1005089
248 Ga0209256_1016252
249 Ga0209257_1000349
250 Ga0209257_1001412
251 Ga0209257_1001905
252 Ga0209257_1004320
253 Ga0209257_1016840
254 Ga0207656_10004154
255 Ga0207710_10005865
256 Ga0207695_10045693
257 Ga0207662_10092373
258 Ga0207649_10140254
259 Ga0207694_10099604
260 Ga0207664_10056562
261 Ga0207686_10003353
262 Ga0207711_10035427
263 Ga0207667_10029567
264 Ga0207651_10062007
265 Ga0207658_10000131
266 Ga0207703_10016740
267 Ga0207675_100105151
268 Ga0207675_100215049
269 Ga0207698_10007973
270 Ga0207428_10002942
271 Ga0265354_1000408
272 Ga0268266_10144630
273 Ga0268264_10105720
274 Ga0265770_1001732
275 Ga0265760_10002154
276 Ga0316579_10000601
277 Ga0265314_10067031
278 Ga0307516_10000081
279 Ga0316577_10005405
280 Ga0307413_10001631
281 Ga0307410_10046535
282 Ga0307406_10015039
283 Ga0307412_10105306
284 Ga0307416_100109276
285 Ga0307416_100115268
286 Ga0307414_10017504
287 Ga0307414_10036552
288 Ga0307411_10007150
289 Ga0307411_10042264
290 Ga0316585_10000146
291 Ga0316582_0000256
292 Ga0316584_0000091
293 Ga0373925_0108318
294 Ga0400488_50827
295 Ga0400486_28155
296 Ga0400483_234687
297 Ga0400489_48508
298 Ga0400487_34211
299 Ga0400487_37173
300 Ga0436365_0298064
301 Ga0436365_1392330
302 Ga0439436_0009522
303 Ga0439465_0003657
304 Ga0439433_0008788
305 Ga0439445_0010571
306 Ga0439432_003041
307 Ga0439449_0000782
308 Ga0439449_0001988
309 Ga0439449_0007750
310 Ga0439449_0008307
311 Ga0451577_0000105
312 Ga0453684_0000811
313 Ga0495610_0026326
314 Ga0495656_0005597
315 Ga0495636_0000804
316 Ga0496101_0035982
317 Ga0496104_0008615
318 Ga0496104_0034170
319 Ga0496105_0000580
320 Ga0496107_0072383
321 Ga0496111_0069661
322 Ga0496114_0002650
323 Ga0496115_0023212
324 Ga0496124_0000032
325 Ga0496126_0028867
326 Ga0501290_000849
327 Ga0501034_0000316
328 Ga0501034_0006923
329 Ga0501043_0009878
330 Ga0501047_0002045
331 Ga0501047_0213887
332 Ga0501070_0000471
333 Ga0501073_0001887
334 Ga0501074_0002794
335 Ga0501225_0009417
336 Ga0501080_0004491
337 Ga0501080_0079755
338 Ga0501083_0002506
339 Ga0501265_000473
340 nmdc:mga0k408_7428_c1
341 nmdc:mga08y16_3032_c1
342 nmdc:mga0n895_118158_c1
343 nmdc:mga0n895_72938_c1
344 nmdc:mga08x19_4536_c1
345 Ga0500556_0000313
346 2643816221
347 2643879571
348 2643905647
349 2643913223
350 2643939094
351 2644077165
352 2644528739
353 2644662820
354 2644694608
355 2644698225
356 2842783517
357 2894416106
358 2923517752
359 8001525372
360 8002871620

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19289

PmbA_TldD_3rd

PmbA/TldA metallopeptidase C-terminal domain

259

467

0.99

PF01523

PmbA_TldD_1st

PmbA/TldA metallopeptidase domain 1

54

118

0.98

PF19290

PmbA_TldD_2nd

PmbA/TldA metallopeptidase central domain

145

252

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3qtd-assembly2.cif.gz_B crystal structure of putative modulator of gyrase (pmba) from pseudomonas aeruginosa pao1 0.9368 14 441
5njc-assembly2.cif.gz_D e. coli microcin-processing metalloprotease tldd/e (tldd e263a mutant) with hexapeptide bound 0.919 14 442
3qtd-assembly2.cif.gz_B crystal structure of putative modulator of gyrase (pmba) from pseudomonas aeruginosa pao1 0.9079 14 441
1vpb-assembly1.cif.gz_A-2 crystal structure of a putative modulator of dna gyrase (bt3649) from bacteroides thetaiotaomicron vpi-5482 at 1.75 a resolution 0.9057 17 442
3tv9-assembly1.cif.gz_A-2 crystal structure of putative peptide maturation protein from shigella flexneri 0.9043 17 438
ID Description Score Start End Superfamily
3qtdD01 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.9522 14 242 3.30.2290.10
3tv9A01 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.9319 17 243 3.30.2290.10
3qtdD01 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.9319 14 242 3.30.2290.10
1vpbA01 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.9044 17 238 3.30.2290.10
3tv9A01 Alpha Beta;2-Layer Sandwich;PmbA/TldD fold;PmbA/TldD superfamily 0.9041 17 243 3.30.2290.10
ID Description Score Start End GO Terms
AF-A0A377MAC9-F1-model_v4 PmbA protein 0.9816 359 442 GO:0005829
GO:0006508
GO:0008237
AF-A0A2S6UGA2-F1-model_v4 Metalloprotease PmbA (EC 3.4.-.-) 0.9708 15 243 GO:0005829
GO:0006508
GO:0008237
AF-A0A377MAC9-F1-model_v4 PmbA protein 0.9703 359 442 GO:0005829
GO:0006508
GO:0008237
AF-A0A382C7Y0-F1-model_v4 Metalloprotease PmbA 0.9639 14 282 GO:0005829
GO:0006508
GO:0008237
AF-A0A455UD62-F1-model_v4 Metalloprotease PmbA 0.9631 7 198 GO:0005829
GO:0006508
GO:0008237

Map