F275840

General Info

Members Datasets Scaffolds Average Seq Length
180 131 360 209

Family's Representative Sequence

Representative Sequence 3300031456|Ga0307513_10086411|Ga0307513_100864112
Length 235
Sequence VSRLYDVRQWSPGVDRQGTDTVRVVIGEDQFLLREGLVRLLEAHDLEVCAAVDNGPDLLSAMLDERPEIAIVDIRLPPSFTDEGLRAAIEARRQVPGFPVLILSQYVERLYANELLADGAGSVGYLLKDRVFDGDQFINAVRQVVAGGTVMDPDVVTRLLTHNTRDARLESLTAREREVLKLMAEGRSNSNIAGVLVISEKAVSKHINNILAKLQLPQSGDDNRRVLAVLTYLKQ

Samples

Sample ID Description Type Environment
1 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
24 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
28 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
42 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
43 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
44 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
45 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
46 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
47 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
48 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
49 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
50 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
51 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
54 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
55 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
56 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
57 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
58 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
59 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
60 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
61 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
62 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
63 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
64 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
65 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
66 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
67 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
68 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
69 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
70 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
71 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
72 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
73 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
74 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
75 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
76 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
77 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
78 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
79 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
82 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
83 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
84 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
85 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
86 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
87 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
91 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
92 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
99 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
100 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
101 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
102 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
103 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
107 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
108 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
109 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
110 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
111 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
112 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
113 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
114 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
115 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
116 2643221561 Nocardioides sp. Root151 Isolate Unclassified
117 2643221576 Nocardioides sp. Root614 Isolate Unclassified
118 2643221696 Nocardioides sp. Root140 Isolate Unclassified
119 2643221715 Mycobacterium sp. Root265 Isolate Unclassified
120 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
121 2738541305 Nocardioides sp. CF167 Isolate Unclassified
122 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
123 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
124 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
125 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
126 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
127 2899359706 Amycolatopsis anabasis EGI 650086 Isolate Unclassified
128 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
129 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
130 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
131 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.11
Metatranscriptomes 0
Isolates 8.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.67
Nodule 0.56
Rhizoplane 15
Rhizosphere 71.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307513_10086411 3300031456 Bacteria 3215
2 JGI24735J21928_10067135 3300002067 Bacteria 1029
3 rootH2_10043266 3300003320 Bacteria 2993
4 Ga0070676_10041348 3300005328 Bacteria 2673
5 Ga0070683_100008034 3300005329 Bacteria 8957
6 Ga0070683_100926579 3300005329 Bacteria 836
7 Ga0068868_100247236 3300005338 Bacteria 1500
8 Ga0070659_100242684 3300005366 Bacteria 1491
9 Ga0070667_100236898 3300005367 Bacteria 1629
10 Ga0070714_100008117 3300005435 Bacteria 8182
11 Ga0070700_100290490 3300005441 Bacteria 1189
12 Ga0070663_100000554 3300005455 Bacteria 19910
13 Ga0070663_100147495 3300005455 Bacteria 1801
14 Ga0070678_100514966 3300005456 Bacteria 1058
15 Ga0070662_100155057 3300005457 Bacteria 1787
16 Ga0070707_100052884 3300005468 Bacteria 3894
17 Ga0070698_100004614 3300005471 Bacteria 15136
18 Ga0070679_100002823 3300005530 Bacteria 15800
19 Ga0070684_100100762 3300005535 Bacteria 2580
20 Ga0070665_100005145 3300005548 Bacteria 13543
21 Ga0068856_100414782 3300005614 Bacteria 1367
22 Ga0070702_100595399 3300005615 Bacteria 828
23 Ga0081455_10000962 3300005937 Bacteria 36818
24 Ga0081539_10000930 3300005985 Bacteria 54982
25 Ga0068865_100275673 3300006881 Bacteria 1337
26 Ga0105245_10217356 3300009098 Bacteria 1842
27 Ga0105245_10613377 3300009098 Bacteria 1115
28 Ga0105243_10117511 3300009148 Bacteria 2236
29 Ga0105238_11357392 3300009551 Bacteria 737
30 Ga0157372_11437519 3300013307 Bacteria 795
31 Ga0207647_10061059 3300025904 Bacteria 2302
32 Ga0207657_10282592 3300025919 Bacteria 1317
33 Ga0207652_10059870 3300025921 Bacteria 3284
34 Ga0207652_10081470 3300025921 Bacteria 2831
35 Ga0207646_10059047 3300025922 Bacteria 3425
36 Ga0207664_10003937 3300025929 Bacteria 9988
37 Ga0207706_10198250 3300025933 Bacteria 1761
38 Ga0207661_10028325 3300025944 Bacteria 4289
39 Ga0207640_10286533 3300025981 Bacteria 1296
40 Ga0207658_10184881 3300025986 Bacteria 1728
41 Ga0207678_10001638 3300026067 Bacteria 20520
42 Ga0207678_10104030 3300026067 Bacteria 2423
43 Ga0207708_10424028 3300026075 Bacteria 1104
44 Ga0207683_10318623 3300026121 Bacteria 1424
45 Ga0268266_10008169 3300028379 Bacteria 9339
46 Ga0268266_10193648 3300028379 Bacteria 1857
47 Ga0307511_10001041 3300030521 Bacteria 29482
48 Ga0307512_10020013 3300030522 Bacteria 6076
49 Ga0316181_1110745 3300030744 Bacteria 1640
50 Ga0307513_10106128 3300031456 Bacteria 2816
51 Ga0307516_10032500 3300031730 Bacteria 5254
52 Ga0307413_10141532 3300031824 Bacteria 1663
53 Ga0307518_10244373 3300031838 Bacteria 1147
54 Ga0307406_10203303 3300031901 Bacteria 1460
55 Ga0307412_10255208 3300031911 Bacteria 1364
56 Ga0307409_100683129 3300031995 Bacteria 1024
57 Ga0307416_100053125 3300032002 Bacteria 3249
58 Ga0307414_10138252 3300032004 Bacteria 1903
59 Ga0307415_100008963 3300032126 Bacteria 5579
60 Ga0373924_0113804 3300035410 Bacteria 1171
61 Ga0373925_0023395 3300037068 Bacteria 4508
62 Ga0395898_0003357 3300037466 Bacteria 17958
63 Ga0395898_0308245 3300037466 Bacteria 1510
64 Ga0439461_0046602 3300041410 Bacteria 950
65 Ga0439465_0040524 3300041413 Bacteria 1505
66 Ga0439431_0001656 3300041997 Bacteria 4927
67 Ga0439445_0009161 3300042004 Bacteria 2329
68 Ga0439448_0068867 3300042005 Bacteria 1177
69 Ga0439434_0001956 3300042435 Bacteria 5964
70 Ga0466965_0002271 3300044683 Bacteria 8097
71 Ga0466965_0046815 3300044683 Bacteria 2141
72 Ga0466965_0061993 3300044683 Bacteria 1870
73 Ga0466965_0064886 3300044683 Bacteria 1829
74 Ga0466963_0123822 3300044694 Bacteria 1781
75 Ga0466964_0071869 3300044706 Bacteria 1465
76 Ga0466964_0081456 3300044706 Bacteria 1390
77 Ga0466971_0148030 3300044719 Bacteria 1095
78 Ga0466970_0027736 3300044765 Bacteria 2972
79 Ga0466957_0031069 3300044842 Bacteria 3190
80 Ga0466960_0221076 3300044901 Bacteria 1042
81 Ga0466967_0064302 3300045976 Bacteria 3262
82 Ga0466967_0158971 3300045976 Bacteria 2119
83 Ga0466967_0384439 3300045976 Bacteria 1363
84 Ga0495629_0310255 3300046459 Bacteria 1079
85 Ga0495638_0265983 3300046460 Bacteria 938
86 Ga0495582_0028694 3300046473 Bacteria 3054
87 Ga0495664_0007220 3300046477 Bacteria 6160
88 Ga0495647_0312784 3300046681 Bacteria 710
89 Ga0495658_0465748 3300046683 Bacteria 808
90 Ga0495680_0387602 3300047322 Bacteria 967
91 Ga0496100_0414139 3300048903 Bacteria 1028
92 Ga0496101_0055978 3300048904 Bacteria 2850
93 Ga0496101_0265149 3300048904 Bacteria 1340
94 Ga0496101_0512550 3300048904 Bacteria 948
95 Ga0496101_0744727 3300048904 Bacteria 773
96 Ga0496102_0069026 3300048905 Bacteria 3244
97 Ga0496102_0333916 3300048905 Bacteria 1428
98 Ga0496104_0027252 3300048907 Bacteria 5287
99 Ga0496105_0007510 3300048908 Bacteria 8445
100 Ga0496106_0262744 3300048909 Bacteria 1381
101 Ga0496107_0010641 3300048910 Bacteria 6396
102 Ga0496107_0030518 3300048910 Bacteria 3842
103 Ga0496107_0549738 3300048910 Bacteria 855
104 Ga0496108_0277424 3300048911 Bacteria 1459
105 Ga0496109_0056352 3300048912 Bacteria 3587
106 Ga0496109_0207873 3300048912 Bacteria 1841
107 Ga0496109_0490639 3300048912 Bacteria 1159
108 Ga0496110_0106034 3300048913 Bacteria 2522
109 Ga0496113_0011500 3300048916 Bacteria 5909
110 Ga0496113_0108116 3300048916 Bacteria 2162
111 Ga0496114_0012855 3300048917 Bacteria 6705
112 Ga0496114_0023950 3300048917 Bacteria 4981
113 Ga0496114_0039815 3300048917 Bacteria 3889
114 Ga0496114_0744245 3300048917 Bacteria 857
115 Ga0496115_0074879 3300048918 Bacteria 2749
116 Ga0496115_0079970 3300048918 Bacteria 2661
117 Ga0496115_0137461 3300048918 Bacteria 2015
118 Ga0496126_0724805 3300048929 Bacteria 770
119 Ga0501032_0048287 3300049569 Bacteria 2874
120 Ga0501032_0072164 3300049569 Bacteria 2301
121 Ga0501033_0049095 3300049570 Bacteria 3133
122 Ga0501034_0350850 3300049571 Bacteria 1404
123 Ga0501034_0486208 3300049571 Bacteria 1149
124 Ga0501034_0705098 3300049571 Bacteria 907
125 Ga0501037_0129038 3300049573 Bacteria 1814
126 Ga0501038_0468787 3300049574 Bacteria 966
127 Ga0501043_0191882 3300049579 Bacteria 1588
128 Ga0501047_0304463 3300049581 Bacteria 1436
129 Ga0501067_0005673 3300049583 Bacteria 6930
130 Ga0501067_0059399 3300049583 Bacteria 2117
131 Ga0501067_0233535 3300049583 Bacteria 1023
132 Ga0501068_0009017 3300049584 Bacteria 5567
133 Ga0501068_0083386 3300049584 Bacteria 1964
134 Ga0501069_0009437 3300049585 Bacteria 5149
135 Ga0501069_0399491 3300049585 Bacteria 813
136 Ga0501070_0001487 3300049586 Bacteria 20963
137 Ga0501070_0043618 3300049586 Bacteria 3732
138 Ga0501070_0066690 3300049586 Bacteria 2980
139 Ga0501070_0199974 3300049586 Bacteria 1641
140 Ga0501070_0385720 3300049586 Bacteria 1134
141 Ga0501070_0620106 3300049586 Bacteria 861
142 Ga0501071_0107983 3300049587 Bacteria 2055
143 Ga0501071_0627394 3300049587 Bacteria 827
144 Ga0501072_0173141 3300049588 Bacteria 1722
145 Ga0501073_0016997 3300049589 Bacteria 5269
146 Ga0501073_0039972 3300049589 Bacteria 3321
147 Ga0501073_0111484 3300049589 Bacteria 1897
148 Ga0501074_0013341 3300049590 Bacteria 5976
149 Ga0501074_0046934 3300049590 Bacteria 3122
150 Ga0501074_0403620 3300049590 Bacteria 969
151 Ga0501077_0431295 3300049593 Bacteria 843
152 Ga0501079_0109030 3300049741 Bacteria 2150
153 Ga0501079_0230416 3300049741 Bacteria 1447
154 Ga0501079_0450746 3300049741 Bacteria 1010
155 Ga0501080_0017146 3300049742 Bacteria 6690
156 Ga0501080_0036814 3300049742 Bacteria 4568
157 Ga0501080_0078611 3300049742 Bacteria 3067
158 Ga0501083_0012497 3300049744 Bacteria 5939
159 nmdc:mga0sz30_72828_c1 3300050516 Bacteria 1480
160 Ga0500616_0000021 3300053153 Bacteria 484527
161 Ga0500645_017137 3300053730 Bacteria 2274
162 Ga0501082_0028420 3300060353 Bacteria 4818
163 Ga0466962_0027381 3300061719 Bacteria 2735
164 Ga0530510_0332549 3300061734 Bacteria 1140
165 2643827783 2643221561 Bacteria 4984412
166 2643890291 2643221576 Bacteria 5214352
167 2644532449 2643221696 Bacteria 5431823
168 2644638041 2643221715 Bacteria 6671032
169 2676483891 2675903059 Bacteria 8644972
170 2738869944 2738541305 Bacteria 4910150
171 2812350527 2811994878 Bacteria 5992952
172 2852679769 2852677369 Bacteria 3768884
173 2855387684 2855386786 Bacteria 4752232
174 2862516643 2862507626 Bacteria 9425308
175 2880490336 2880489317 Bacteria 7096270
176 2899360456 2899359706 Bacteria 10940472
177 2902816381 2902810491 Bacteria 6794147
178 2917743644 2917736166 Bacteria 9690793
179 8054708830 8054704163 Bacteria 7247792
180 8055039856 8055037949 Bacteria 3337834
181 Ga0307513_10086411
182 JGI24735J21928_10067135
183 rootH2_10043266
184 Ga0070676_10041348
185 Ga0070683_100008034
186 Ga0070683_100926579
187 Ga0068868_100247236
188 Ga0070659_100242684
189 Ga0070667_100236898
190 Ga0070714_100008117
191 Ga0070700_100290490
192 Ga0070663_100000554
193 Ga0070663_100147495
194 Ga0070678_100514966
195 Ga0070662_100155057
196 Ga0070707_100052884
197 Ga0070698_100004614
198 Ga0070679_100002823
199 Ga0070684_100100762
200 Ga0070665_100005145
201 Ga0068856_100414782
202 Ga0070702_100595399
203 Ga0081455_10000962
204 Ga0081539_10000930
205 Ga0068865_100275673
206 Ga0105245_10217356
207 Ga0105245_10613377
208 Ga0105243_10117511
209 Ga0105238_11357392
210 Ga0157372_11437519
211 Ga0207647_10061059
212 Ga0207657_10282592
213 Ga0207652_10059870
214 Ga0207652_10081470
215 Ga0207646_10059047
216 Ga0207664_10003937
217 Ga0207706_10198250
218 Ga0207661_10028325
219 Ga0207640_10286533
220 Ga0207658_10184881
221 Ga0207678_10001638
222 Ga0207678_10104030
223 Ga0207708_10424028
224 Ga0207683_10318623
225 Ga0268266_10008169
226 Ga0268266_10193648
227 Ga0307511_10001041
228 Ga0307512_10020013
229 Ga0316181_1110745
230 Ga0307513_10106128
231 Ga0307516_10032500
232 Ga0307413_10141532
233 Ga0307518_10244373
234 Ga0307406_10203303
235 Ga0307412_10255208
236 Ga0307409_100683129
237 Ga0307416_100053125
238 Ga0307414_10138252
239 Ga0307415_100008963
240 Ga0373924_0113804
241 Ga0373925_0023395
242 Ga0395898_0003357
243 Ga0395898_0308245
244 Ga0439461_0046602
245 Ga0439465_0040524
246 Ga0439431_0001656
247 Ga0439445_0009161
248 Ga0439448_0068867
249 Ga0439434_0001956
250 Ga0466965_0002271
251 Ga0466965_0046815
252 Ga0466965_0061993
253 Ga0466965_0064886
254 Ga0466963_0123822
255 Ga0466964_0071869
256 Ga0466964_0081456
257 Ga0466971_0148030
258 Ga0466970_0027736
259 Ga0466957_0031069
260 Ga0466960_0221076
261 Ga0466967_0064302
262 Ga0466967_0158971
263 Ga0466967_0384439
264 Ga0495629_0310255
265 Ga0495638_0265983
266 Ga0495582_0028694
267 Ga0495664_0007220
268 Ga0495647_0312784
269 Ga0495658_0465748
270 Ga0495680_0387602
271 Ga0496100_0414139
272 Ga0496101_0055978
273 Ga0496101_0265149
274 Ga0496101_0512550
275 Ga0496101_0744727
276 Ga0496102_0069026
277 Ga0496102_0333916
278 Ga0496104_0027252
279 Ga0496105_0007510
280 Ga0496106_0262744
281 Ga0496107_0010641
282 Ga0496107_0030518
283 Ga0496107_0549738
284 Ga0496108_0277424
285 Ga0496109_0056352
286 Ga0496109_0207873
287 Ga0496109_0490639
288 Ga0496110_0106034
289 Ga0496113_0011500
290 Ga0496113_0108116
291 Ga0496114_0012855
292 Ga0496114_0023950
293 Ga0496114_0039815
294 Ga0496114_0744245
295 Ga0496115_0074879
296 Ga0496115_0079970
297 Ga0496115_0137461
298 Ga0496126_0724805
299 Ga0501032_0048287
300 Ga0501032_0072164
301 Ga0501033_0049095
302 Ga0501034_0350850
303 Ga0501034_0486208
304 Ga0501034_0705098
305 Ga0501037_0129038
306 Ga0501038_0468787
307 Ga0501043_0191882
308 Ga0501047_0304463
309 Ga0501067_0005673
310 Ga0501067_0059399
311 Ga0501067_0233535
312 Ga0501068_0009017
313 Ga0501068_0083386
314 Ga0501069_0009437
315 Ga0501069_0399491
316 Ga0501070_0001487
317 Ga0501070_0043618
318 Ga0501070_0066690
319 Ga0501070_0199974
320 Ga0501070_0385720
321 Ga0501070_0620106
322 Ga0501071_0107983
323 Ga0501071_0627394
324 Ga0501072_0173141
325 Ga0501073_0016997
326 Ga0501073_0039972
327 Ga0501073_0111484
328 Ga0501074_0013341
329 Ga0501074_0046934
330 Ga0501074_0403620
331 Ga0501077_0431295
332 Ga0501079_0109030
333 Ga0501079_0230416
334 Ga0501079_0450746
335 Ga0501080_0017146
336 Ga0501080_0036814
337 Ga0501080_0078611
338 Ga0501083_0012497
339 nmdc:mga0sz30_72828_c1
340 Ga0500616_0000021
341 Ga0500645_017137
342 Ga0501082_0028420
343 Ga0466962_0027381
344 Ga0530510_0332549
345 2643827783
346 2643890291
347 2644532449
348 2644638041
349 2676483891
350 2738869944
351 2812350527
352 2852679769
353 2855387684
354 2862516643
355 2880490336
356 2899360456
357 2902816381
358 2917743644
359 8054708830
360 8055039856

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00196

GerE

Bacterial regulatory proteins, luxR family

170

222

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

166

214

0.95

PF00072

Response_reg

Response regulator receiver domain

24

142

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.9616 144 210
1fse-assembly2.cif.gz_C crystal structure of the bacillus subtilis regulatory protein gere 0.9557 148 210
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9547 144 210
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9517 144 210
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9491 148 207
ID Description Score Start End Superfamily
3cloC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.967 148 207 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9643 148 207 1.10.10.10
1fseC00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9557 148 210 1.10.10.10
4if4B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9491 142 210 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9491 148 207 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A6I5GGF7-F1-model_v4 deleted 0.9785 1 121
AF-A0A6H9YBC7-F1-model_v4 Response regulator transcription factor 0.9635 1 139 GO:0000160
GO:0003677
AF-A0A0M8TWJ5-F1-model_v4 LuxR family transcriptional regulator 0.9629 1 105 GO:0000160
GO:0003677
AF-A0A6I5GGF7-F1-model_v4 deleted 0.9629 1 121
AF-A0A6H9YBC7-F1-model_v4 Response regulator transcription factor 0.9568 1 139 GO:0000160
GO:0003677

Map