F275255

General Info

Members Datasets Scaffolds Average Seq Length
180 125 142 205

Family's Representative Sequence

Representative Sequence 3300005548|Ga0070665_100072507|Ga0070665_1000725073
Length 238
Sequence MSGRTEGGNVEHRRGRPPIALRRPTGHDAAVSTAIITAAISGFFLGASLIIAIGAQNAFILRQGLLRQHVFVLCLICALSDALLIVAGVAGLGTLIASSPRLIQLVTVLGAIFLFAYALLALRRAFKPEALTAAKTGEGSLKVAIVACLAFTFLNPHVYLDTVLLIGSLSAAYQGAARIAYGAGAGLASFVWFFGLGYGARLLQPVFARPAAWRVLDVLIAIVMTAIALGLLSRLAYD

Samples

Sample ID Description Type Environment
1 2511231027 Phyllobacterium sp. YR531 Isolate Rhizosphere
2 2534681786 Brucella suis 92/29 Isolate Unclassified
3 2593339238 Luteibacter sp. UNCMF366Tsu5.1 Isolate Unclassified
4 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
5 2643221643 Rhizobium sp. Root1220 Isolate Unclassified
6 2713897090 Paracoccus sphaerophysae HAMBI 3106 Isolate Nodule
7 2738543024 Aminobacter sp. AP02 Isolate Unclassified
8 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
9 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
10 2765235802 Phyllobacterium bourgognense 31-25a Isolate Rhizoplane
11 2767802442 Phyllobacterium brassicacearum 29-15 Isolate Rhizoplane
12 2775506902 Phyllobacterium zundukense Tri-48 Isolate Unclassified
13 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
14 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
15 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
16 2842871566 Phyllobacterium sp. R-73111 Isolate Unclassified
17 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
18 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
19 2855020534 Paracoccus endophyticus SYSUP0003 Isolate Stem Tuber
20 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
21 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
22 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
23 2894652903 Phyllobacterium sp. SYP-B3895 Isolate Rhizosphere
24 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
25 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
26 2916699645 Acinetobacter ursingii M3 Isolate Unclassified
27 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere
28 2928521798 Phyllobacterium ifriqiyense 1451 Isolate Rhizosphere
29 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
30 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
31 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
32 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
33 3002141150 Phyllobacterium sp. 628 Isolate Unclassified
34 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
35 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
36 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
37 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
38 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
39 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
40 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
41 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
42 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
43 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
44 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
45 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
46 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
47 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
53 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
55 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
56 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
61 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
62 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
63 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
64 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
65 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
66 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
67 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
68 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
69 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
70 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
71 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
72 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
73 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
74 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
75 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
76 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
77 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
82 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
83 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
84 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
85 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
86 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
87 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
88 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
100 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
101 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
102 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
103 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
106 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
107 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
108 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
112 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
115 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
116 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
117 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
118 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
119 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
120 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
121 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
122 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
123 8033232454 Acinetobacter radioresistens SA188 Isolate Unclassified
124 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
125 8056875544 Rhizobium halophilum TRM95001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.89
Metatranscriptomes 0
Isolates 21.11

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.78
Nodule 1.67
Rhizoplane 3.33
Rhizosphere 66.67
Stem 0
Stem Tuber 0.56
Unclassified 15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10047126 3300003322 Bacteria 15212
2 Ga0065165_1003237 3300005262 Bacteria 11806
3 Ga0070683_100295754 3300005329 Bacteria 1540
4 Ga0070667_100794538 3300005367 Bacteria 878
5 Ga0070663_100250815 3300005455 Bacteria 1401
6 Ga0070665_100072507 3300005548 Bacteria 3451
7 Ga0068864_100350225 3300005618 Bacteria 1393
8 Ga0068858_100502198 3300005842 Bacteria 1172
9 Ga0081539_10001657 3300005985 Bacteria 36110
10 Ga0075365_10039600 3300006038 Bacteria 3070
11 Ga0075365_10090461 3300006038 Bacteria 2084
12 Ga0075364_10261558 3300006051 Bacteria 1176
13 Ga0075362_10282731 3300006177 Bacteria 821
14 Ga0075366_10099912 3300006195 Bacteria 1741
15 Ga0105243_10025199 3300009148 Bacteria 4543
16 Ga0105243_11630718 3300009148 Bacteria 672
17 Ga0105249_10570798 3300009553 Bacteria 1184
18 Ga0157372_10282217 3300013307 Bacteria 1931
19 Ga0182008_10022859 3300014497 Bacteria 3199
20 Ga0209674_101322 3300025226 Bacteria 6839
21 Ga0209437_101203 3300025233 Bacteria 7511
22 Ga0209673_1002349 3300025273 Bacteria 13347
23 Ga0209130_1010353 3300025284 Bacteria 2574
24 Ga0209025_1037121 3300025294 Bacteria 2167
25 Ga0209025_1075754 3300025294 Bacteria 1169
26 Ga0207709_10011015 3300025935 Bacteria 4985
27 Ga0207661_11216403 3300025944 Bacteria 693
28 Ga0207675_100113523 3300026118 Bacteria 2558
29 Ga0207683_10146406 3300026121 Bacteria 2130
30 Ga0307515_10108653 3300028794 Bacteria 3266
31 Ga0307515_10124276 3300028794 Bacteria 2896
32 Ga0307513_10396001 3300031456 Bacteria 1116
33 Ga0307414_10044348 3300032004 Bacteria 3036
34 Ga0307414_11019153 3300032004 Bacteria 762
35 Ga0373927_0000258 3300035695 Bacteria 41757
36 Ga0373925_0005623 3300037068 Bacteria 9325
37 Ga0400483_211046 3300039062 Bacteria 2844
38 Ga0453684_0401912 3300044712 Bacteria 1534
39 Ga0466971_0048771 3300044719 Bacteria 1904
40 Ga0466959_0642691 3300045049 Bacteria 712
41 Ga0495638_0023957 3300046460 Bacteria 3985
42 Ga0495638_0237560 3300046460 Bacteria 1011
43 Ga0495583_0184530 3300046506 Bacteria 853
44 Ga0495606_0021647 3300046507 Bacteria 4704
45 Ga0495610_0002493 3300046512 Bacteria 15389
46 Ga0495610_0172765 3300046512 Bacteria 905
47 Ga0495632_0010045 3300046519 Bacteria 5640
48 Ga0495632_0082382 3300046519 Bacteria 1533
49 Ga0495643_0017310 3300046522 Bacteria 4215
50 Ga0495643_0106803 3300046522 Bacteria 1428
51 Ga0495656_0005975 3300046615 Bacteria 4235
52 Ga0495625_0196377 3300046660 Bacteria 1334
53 Ga0495589_0223038 3300046794 Bacteria 885
54 Ga0495686_0001094 3300047472 Bacteria 32227
55 Ga0495686_0019106 3300047472 Bacteria 4583
56 Ga0496101_0801618 3300048904 Bacteria 743
57 Ga0496101_0944837 3300048904 Bacteria 678
58 Ga0496102_0502570 3300048905 Bacteria 1135
59 Ga0496114_0262311 3300048917 Bacteria 1521
60 Ga0496117_0015855 3300048920 Bacteria 6392
61 Ga0496118_0141713 3300048921 Bacteria 1522
62 Ga0496120_0016016 3300048923 Bacteria 4916
63 Ga0496121_0000001 3300048924 Bacteria 1830318
64 Ga0496125_0000001 3300048928 Bacteria 1766138
65 Ga0495678_018576 3300049459 Bacteria 3122
66 Ga0501031_0041530 3300049568 Bacteria 3003
67 Ga0501032_0010470 3300049569 Bacteria 6690
68 Ga0501032_0124263 3300049569 Bacteria 1705
69 Ga0501033_0001375 3300049570 Bacteria 21675
70 Ga0501033_0271103 3300049570 Bacteria 1200
71 Ga0501034_0054266 3300049571 Bacteria 4035
72 Ga0501034_0148969 3300049571 Bacteria 2316
73 Ga0501034_0293633 3300049571 Bacteria 1563
74 Ga0501034_0362518 3300049571 Bacteria 1376
75 Ga0501034_0393395 3300049571 Bacteria 1310
76 Ga0501034_1129845 3300049571 Bacteria 664
77 Ga0501037_0000191 3300049573 Bacteria 56839
78 Ga0501037_0449237 3300049573 Bacteria 879
79 Ga0501038_0080060 3300049574 Bacteria 2754
80 Ga0501038_0186959 3300049574 Bacteria 1669
81 Ga0501038_0270937 3300049574 Bacteria 1339
82 Ga0501039_0170233 3300049575 Bacteria 1713
83 Ga0501040_0762701 3300049576 Bacteria 700
84 Ga0501043_0000080 3300049579 Bacteria 85372
85 Ga0501046_0213306 3300049580 Bacteria 1432
86 Ga0501046_0293384 3300049580 Bacteria 1189
87 Ga0501047_0063641 3300049581 Bacteria 3558
88 Ga0501067_0000517 3300049583 Bacteria 21118
89 Ga0501068_0327303 3300049584 Bacteria 983
90 Ga0501069_0000072 3300049585 Bacteria 51127
91 Ga0501069_0003789 3300049585 Bacteria 7780
92 Ga0501069_0010336 3300049585 Bacteria 4939
93 Ga0501069_0044525 3300049585 Bacteria 2457
94 Ga0501070_0000153 3300049586 Bacteria 63492
95 Ga0501070_0000639 3300049586 Bacteria 32293
96 Ga0501070_0143301 3300049586 Bacteria 1973
97 Ga0501070_0153147 3300049586 Bacteria 1902
98 Ga0501070_0359860 3300049586 Bacteria 1180
99 Ga0501070_0765046 3300049586 Bacteria 760
100 Ga0501071_0014069 3300049587 Bacteria 5468
101 Ga0501071_0364673 3300049587 Bacteria 1100
102 Ga0501073_0015316 3300049589 Bacteria 5560
103 Ga0501073_0078878 3300049589 Bacteria 2292
104 Ga0501074_0000075 3300049590 Bacteria 48137
105 Ga0501074_0062504 3300049590 Bacteria 2682
106 Ga0501076_0019130 3300049592 Bacteria 5229
107 Ga0501080_0032658 3300049742 Bacteria 4855
108 Ga0501080_0065957 3300049742 Bacteria 3367
109 Ga0501080_0067400 3300049742 Bacteria 3329
110 Ga0501080_0108159 3300049742 Bacteria 2577
111 Ga0501080_0127084 3300049742 Bacteria 2361
112 Ga0501080_0525012 3300049742 Bacteria 1056
113 Ga0501083_0000360 3300049744 Bacteria 28858
114 Ga0501083_0004018 3300049744 Bacteria 10337
115 Ga0501083_0070256 3300049744 Bacteria 2329
116 Ga0501083_0244572 3300049744 Bacteria 1168
117 Ga0501035_0000167 3300049822 Bacteria 80102
118 Ga0501035_0018481 3300049822 Bacteria 6422
119 Ga0501035_0057181 3300049822 Bacteria 3478
120 Ga0501035_0070487 3300049822 Bacteria 3096
121 Ga0501035_0243935 3300049822 Bacteria 1527
122 Ga0501044_0000544 3300049823 Bacteria 45911
123 Ga0501044_0010606 3300049823 Bacteria 9997
124 Ga0501044_0142288 3300049823 Bacteria 2387
125 Ga0501044_0317402 3300049823 Bacteria 1483
126 nmdc:mga00v17_200583_c1 3300050491 Bacteria 1290
127 nmdc:mga0yw44_25494_c1 3300050492 Bacteria 3363
128 nmdc:mga0k408_414448_c1 3300050493 Bacteria 801
129 Ga0500618_003354 3300053125 Bacteria 5532
130 Ga0500573_0000560 3300053140 Bacteria 16226
131 Ga0500577_0117363 3300053142 Bacteria 1104
132 Ga0500604_0069914 3300053151 Bacteria 1118
133 Ga0500616_0026640 3300053153 Bacteria 3198
134 Ga0500616_0205965 3300053153 Bacteria 868
135 Ga0500627_0112817 3300053158 Bacteria 1224
136 Ga0500627_0141440 3300053158 Bacteria 1087
137 Ga0501084_0001111 3300054114 Bacteria 20958
138 Ga0501084_0367691 3300054114 Bacteria 1215
139 Ga0501084_0667442 3300054114 Bacteria 877
140 Ga0501082_0067996 3300060353 Bacteria 3068
141 Ga0501082_0098111 3300060353 Bacteria 2533
142 Ga0501082_0598648 3300060353 Bacteria 965

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009553 Ga0105249_10570798 Ga0105249_105707982 182
2 3300032004 Ga0307414_10044348 Ga0307414_100443482 184
3 3300044719 Ga0466971_0048771 Ga0466971_0048771_11_574 185
4 3300053142 Ga0500577_0117363 Ga0500577_0117363_86_715 193
5 iso_pu_bacteria 2916699645 2916701101 194
6 3300049571 Ga0501034_1129845 Ga0501034_1129845_43_648 195
7 iso_pu_bacteria 8033232454 8033235566 195
8 3300039062 Ga0400483_211046 Ga0400483_211046_1795_2391 196
9 iso_pu_bacteria 2511231027 2511392665 196
10 iso_pu_bacteria 2534681786 2535484423 196
11 iso_pu_bacteria 2757320392 2757570768 196
12 iso_pu_bacteria 2758568016 2758641225 196
13 iso_pu_bacteria 2765235802 2765465176 196
14 iso_pu_bacteria 2767802442 2770197322 196
15 iso_pu_bacteria 2775506902 2776271970 196
16 iso_pu_bacteria 2775506904 2776279512 196
17 iso_pu_bacteria 2839993093 2839995917 196
18 iso_pu_bacteria 2840764183 2840769649 196
19 iso_pu_bacteria 2842871566 2842874531 196
20 iso_pu_bacteria 2855020534 2855022292 196
21 iso_pu_bacteria 2894652903 2894654900 196
22 iso_pu_bacteria 2904578770 2904581345 196
23 iso_pu_bacteria 2915650412 2915651495 196
24 iso_pu_bacteria 2919119836 2919122584 196
25 iso_pu_bacteria 2928521798 2928524692 196
26 iso_pu_bacteria 2954011201 2954015116 196
27 iso_pu_bacteria 3002141150 3002143312 196
28 iso_pu_bacteria 8056875544 8056876607 196
29 3300049571 Ga0501034_0148969 Ga0501034_0148969_1629_2228 198
30 3300049576 Ga0501040_0762701 Ga0501040_0762701_51_650 198
31 iso_pu_bacteria 2593339238 2595446101 198
32 iso_pu_bacteria 2643221643 2644242857 198
33 iso_pu_bacteria 2844852863 2844856007 198
34 iso_pu_bacteria 8056037122 8056039891 198
35 3300005329 Ga0070683_100295754 Ga0070683_1002957541 199
36 3300005618 Ga0068864_100350225 Ga0068864_1003502252 199
37 3300005842 Ga0068858_100502198 Ga0068858_1005021982 199
38 3300009148 Ga0105243_10025199 Ga0105243_100251992 199
39 3300009148 Ga0105243_11630718 Ga0105243_116307181 199
40 3300014497 Ga0182008_10022859 Ga0182008_100228593 199
41 3300025935 Ga0207709_10011015 Ga0207709_100110152 199
42 3300025944 Ga0207661_11216403 Ga0207661_112164031 199
43 3300026118 Ga0207675_100113523 Ga0207675_1001135231 199
44 3300026121 Ga0207683_10146406 Ga0207683_101464062 199
45 3300048904 Ga0496101_0944837 Ga0496101_0944837_59_661 199
46 3300048905 Ga0496102_0502570 Ga0496102_0502570_287_889 199
47 3300048920 Ga0496117_0015855 Ga0496117_0015855_770_1390 199
48 3300048921 Ga0496118_0141713 Ga0496118_0141713_590_1210 199
49 3300048923 Ga0496120_0016016 Ga0496120_0016016_2796_3416 199
50 3300048924 Ga0496121_0000001 Ga0496121_0000001_860951_861571 199
51 3300048928 Ga0496125_0000001 Ga0496125_0000001_974868_975488 199
52 3300050491 nmdc:mga00v17_200583_c1 nmdc:mga00v17_200583_c1_345_965 199
53 iso_pu_bacteria 2852677369 2852678089 199
54 iso_pu_bacteria 2929138655 2929139495 199
55 iso_pu_bacteria 8056875544 8056878457 199
56 3300005455 Ga0070663_100250815 Ga0070663_1002508152 200
57 3300032004 Ga0307414_11019153 Ga0307414_110191531 200
58 3300044712 Ga0453684_0401912 Ga0453684_0401912_269_883 200
59 3300047472 Ga0495686_0001094 Ga0495686_0001094_21170_21787 200
60 3300049580 Ga0501046_0293384 Ga0501046_0293384_42_662 200
61 3300049586 Ga0501070_0143301 Ga0501070_0143301_252_872 200
62 3300053153 Ga0500616_0205965 Ga0500616_0205965_106_720 200
63 iso_pu_bacteria 2643221623 2644132883 200
64 iso_pu_bacteria 2738543024 2739306492 200
65 iso_pu_bacteria 2870622029 2870622123 200
66 iso_pu_bacteria 2889790730 2889795970 200
67 iso_pu_bacteria 2889914905 2889916819 200
68 iso_pu_bacteria 2996310559 2996313276 200
69 iso_pu_bacteria 8002285264 8002287832 200
70 3300049571 Ga0501034_0054266 Ga0501034_0054266_156_773 201
71 iso_pu_bacteria 2946024296 2946025738 201
72 3300005262 Ga0065165_1003237 Ga0065165_10032372 202
73 3300005367 Ga0070667_100794538 Ga0070667_1007945382 202
74 3300006051 Ga0075364_10261558 Ga0075364_102615583 202
75 3300025226 Ga0209674_101322 Ga0209674_1013222 202
76 3300025233 Ga0209437_101203 Ga0209437_1012035 202
77 3300025273 Ga0209673_1002349 Ga0209673_10023496 202
78 3300025284 Ga0209130_1010353 Ga0209130_10103533 202
79 3300025294 Ga0209025_1037121 Ga0209025_10371212 202
80 3300028794 Ga0307515_10124276 Ga0307515_101242764 202
81 3300031456 Ga0307513_10396001 Ga0307513_103960012 202
82 3300046460 Ga0495638_0023957 Ga0495638_0023957_385_999 202
83 3300046460 Ga0495638_0237560 Ga0495638_0237560_245_859 202
84 3300046506 Ga0495583_0184530 Ga0495583_0184530_167_790 202
85 3300046507 Ga0495606_0021647 Ga0495606_0021647_444_1067 202
86 3300046512 Ga0495610_0002493 Ga0495610_0002493_1302_1922 202
87 3300046512 Ga0495610_0172765 Ga0495610_0172765_129_752 202
88 3300046519 Ga0495632_0010045 Ga0495632_0010045_2207_2827 202
89 3300046519 Ga0495632_0082382 Ga0495632_0082382_381_1001 202
90 3300046522 Ga0495643_0017310 Ga0495643_0017310_2238_2858 202
91 3300046522 Ga0495643_0106803 Ga0495643_0106803_312_935 202
92 3300046615 Ga0495656_0005975 Ga0495656_0005975_420_1043 202
93 3300046660 Ga0495625_0196377 Ga0495625_0196377_638_1258 202
94 3300046794 Ga0495589_0223038 Ga0495589_0223038_77_700 202
95 3300047472 Ga0495686_0019106 Ga0495686_0019106_2267_2887 202
96 3300048904 Ga0496101_0801618 Ga0496101_0801618_58_672 202
97 3300048917 Ga0496114_0262311 Ga0496114_0262311_310_933 202
98 3300049459 Ga0495678_018576 Ga0495678_018576_2214_2834 202
99 3300049742 Ga0501080_0525012 Ga0501080_0525012_284_898 202
100 3300049823 Ga0501044_0142288 Ga0501044_0142288_1590_2204 202
101 3300053125 Ga0500618_003354 Ga0500618_003354_786_1409 202
102 3300053158 Ga0500627_0112817 Ga0500627_0112817_495_1109 202
103 3300005985 Ga0081539_10001657 Ga0081539_1000165731 203
104 3300006195 Ga0075366_10099912 Ga0075366_100999123 203
105 3300013307 Ga0157372_10282217 Ga0157372_102822173 203
106 3300025294 Ga0209025_1075754 Ga0209025_10757541 203
107 3300028794 Ga0307515_10108653 Ga0307515_101086534 203
108 3300035695 Ga0373927_0000258 Ga0373927_0000258_3173_3802 203
109 3300037068 Ga0373925_0005623 Ga0373925_0005623_8409_9038 203
110 3300049568 Ga0501031_0041530 Ga0501031_0041530_683_1303 203
111 3300049569 Ga0501032_0010470 Ga0501032_0010470_2120_2746 203
112 3300049569 Ga0501032_0124263 Ga0501032_0124263_609_1235 203
113 3300049570 Ga0501033_0001375 Ga0501033_0001375_16714_17340 203
114 3300049570 Ga0501033_0271103 Ga0501033_0271103_117_737 203
115 3300049571 Ga0501034_0393395 Ga0501034_0393395_631_1263 203
116 3300049573 Ga0501037_0000191 Ga0501037_0000191_11190_11816 203
117 3300049573 Ga0501037_0449237 Ga0501037_0449237_92_721 203
118 3300049574 Ga0501038_0080060 Ga0501038_0080060_224_850 203
119 3300049574 Ga0501038_0186959 Ga0501038_0186959_82_708 203
120 3300049574 Ga0501038_0270937 Ga0501038_0270937_221_847 203
121 3300049575 Ga0501039_0170233 Ga0501039_0170233_676_1302 203
122 3300049579 Ga0501043_0000080 Ga0501043_0000080_45024_45650 203
123 3300049580 Ga0501046_0213306 Ga0501046_0213306_647_1267 203
124 3300049581 Ga0501047_0063641 Ga0501047_0063641_1468_2094 203
125 3300049584 Ga0501068_0327303 Ga0501068_0327303_304_930 203
126 3300049585 Ga0501069_0000072 Ga0501069_0000072_39375_40001 203
127 3300049585 Ga0501069_0003789 Ga0501069_0003789_303_929 203
128 3300049585 Ga0501069_0010336 Ga0501069_0010336_1961_2587 203
129 3300049585 Ga0501069_0044525 Ga0501069_0044525_1061_1690 203
130 3300049586 Ga0501070_0000153 Ga0501070_0000153_39670_40296 203
131 3300049586 Ga0501070_0000639 Ga0501070_0000639_30616_31242 203
132 3300049586 Ga0501070_0153147 Ga0501070_0153147_635_1255 203
133 3300049586 Ga0501070_0359860 Ga0501070_0359860_535_1161 203
134 3300049586 Ga0501070_0765046 Ga0501070_0765046_54_674 203
135 3300049587 Ga0501071_0014069 Ga0501071_0014069_205_831 203
136 3300049587 Ga0501071_0364673 Ga0501071_0364673_266_892 203
137 3300049589 Ga0501073_0078878 Ga0501073_0078878_1252_1878 203
138 3300049590 Ga0501074_0000075 Ga0501074_0000075_38941_39567 203
139 3300049590 Ga0501074_0062504 Ga0501074_0062504_480_1106 203
140 3300049742 Ga0501080_0032658 Ga0501080_0032658_294_920 203
141 3300049742 Ga0501080_0065957 Ga0501080_0065957_701_1327 203
142 3300049742 Ga0501080_0108159 Ga0501080_0108159_726_1352 203
143 3300049742 Ga0501080_0127084 Ga0501080_0127084_312_938 203
144 3300049744 Ga0501083_0000360 Ga0501083_0000360_684_1310 203
145 3300049744 Ga0501083_0070256 Ga0501083_0070256_698_1318 203
146 3300049744 Ga0501083_0244572 Ga0501083_0244572_379_1005 203
147 3300049822 Ga0501035_0000167 Ga0501035_0000167_40102_40728 203
148 3300049822 Ga0501035_0018481 Ga0501035_0018481_1366_1992 203
149 3300049822 Ga0501035_0057181 Ga0501035_0057181_2438_3064 203
150 3300049822 Ga0501035_0070487 Ga0501035_0070487_1323_1949 203
151 3300049822 Ga0501035_0243935 Ga0501035_0243935_880_1500 203
152 3300049823 Ga0501044_0000544 Ga0501044_0000544_3265_3891 203
153 3300049823 Ga0501044_0010606 Ga0501044_0010606_16_642 203
154 3300049823 Ga0501044_0317402 Ga0501044_0317402_190_816 203
155 3300050493 nmdc:mga0k408_414448_c1 nmdc:mga0k408_414448_c1_80_697 203
156 3300053140 Ga0500573_0000560 Ga0500573_0000560_14953_15579 203
157 3300060353 Ga0501082_0067996 Ga0501082_0067996_2139_2765 203
158 3300060353 Ga0501082_0598648 Ga0501082_0598648_295_915 203
159 iso_pu_bacteria 2713897090 2715498886 203
160 3300005548 Ga0070665_100072507 Ga0070665_1000725073 204
161 3300006038 Ga0075365_10039600 Ga0075365_100396003 204
162 3300006038 Ga0075365_10090461 Ga0075365_100904612 204
163 3300006177 Ga0075362_10282731 Ga0075362_102827311 204
164 3300045049 Ga0466959_0642691 Ga0466959_0642691_41_670 204
165 3300049571 Ga0501034_0293633 Ga0501034_0293633_118_753 204
166 3300049571 Ga0501034_0362518 Ga0501034_0362518_408_1043 204
167 3300049583 Ga0501067_0000517 Ga0501067_0000517_6632_7264 204
168 3300049589 Ga0501073_0015316 Ga0501073_0015316_2504_3136 204
169 3300049592 Ga0501076_0019130 Ga0501076_0019130_3843_4475 204
170 3300049742 Ga0501080_0067400 Ga0501080_0067400_2573_3208 204
171 3300049744 Ga0501083_0004018 Ga0501083_0004018_931_1563 204
172 3300050492 nmdc:mga0yw44_25494_c1 nmdc:mga0yw44_25494_c1_1283_1909 204
173 3300053151 Ga0500604_0069914 Ga0500604_0069914_100_726 204
174 3300053153 Ga0500616_0026640 Ga0500616_0026640_2492_3118 204
175 3300053158 Ga0500627_0141440 Ga0500627_0141440_74_700 204
176 3300054114 Ga0501084_0001111 Ga0501084_0001111_17037_17669 204
177 3300054114 Ga0501084_0367691 Ga0501084_0367691_206_841 204
178 3300054114 Ga0501084_0667442 Ga0501084_0667442_161_793 204
179 3300060353 Ga0501082_0098111 Ga0501082_0098111_1745_2377 204
180 3300003322 rootL2_10047126 rootL2_1004712610 205

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01810

LysE

LysE type translocator

47

235

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vkv-assembly1.cif.gz_A solution nmr structure of the membrane electron transporter ccda 0.5364 8 204
5vkv-assembly1.cif.gz_A solution nmr structure of the membrane electron transporter ccda 0.5192 8 204
8j7w-assembly1.cif.gz_A cryo-em structure of hznt7-fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation 0.4448 73 201
8j80-assembly1.cif.gz_A cryo-em structure of hznt7-fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation 0.4418 73 201
6kkj-assembly1.cif.gz_B crystal structure of drug:proton antiporter-1 (dha1) family sotb, in the inward open conformation 0.4149 8 202
ID Description Score Start End Superfamily
af_P67127_16_204_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5833 14 205 1.20.1250.20
af_P67127_16_204_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5782 14 205 1.20.1250.20
af_Q2R4J1_1_279_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5582 3 203 1.20.1250.20
af_Q2R4J1_1_279_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5472 3 203 1.20.1250.20
af_P76264_30_182_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.5281 27 201 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A2I1Z306-F1-model_v4 deleted 0.9484 2 202
AF-V2T8Q4-F1-model_v4 L-lysine exporter 0.9458 5 203 GO:0005886
GO:0015171
AF-A0A2G6SF77-F1-model_v4 L-lysine exporter family protein LysE/ArgO 0.9443 5 203 GO:0005886
GO:0015171
AF-C8N8T5-F1-model_v4 Translocator protein, LysE family 0.9422 5 202 GO:0005886
GO:0015171
AF-A0A379AZ86-F1-model_v4 Putative amino-acid transporter 0.939 5 201 GO:0005886
GO:0015171

Feature Viewer

pLDDT pTM Quality
80.92 0.75 High
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Predicted Structure (AlphaFold2)

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