F273929

General Info

Members Datasets Scaffolds Average Seq Length
179 119 358 908

Family's Representative Sequence

Representative Sequence 3300025912|Ga0207707_10027029|Ga0207707_100270292
Length 969
Sequence MSEARSSPIACDRRLDLSPTARAANIAARFVYRLLTDSTHYLSTTMSELPDRFDFAATEREIYNAWLSAGCFNGHRNHSSRVGGHREPYTIVMPPPNVTAILHVGHGLNNTIQDVIIRWMRMTGAEALWVPGTDHAGIATQNVIEKMLASEGKTRFDLGREAFVKKTEDFVRETGGVILEQLRAIGASADWSRTAYTLSPELSRAVREAFVRLYEKGLIYRGHRVIHWCPRCLTSLSDEEAEFNDETGKLYHIAYPVDGHPDRVLVIATTRPETMLADVAVAVNPEDERYRDLVGKHVRLPIVDRAIPVIADAYADPAFGTGVVKITPAHDANDFEVGRRHSLAMPVVIDENAIVREVSDADGRVPKAIEGLDRFAAREKIVEMLEQSGALQKVETHQHAVRHCYRCDTVVEPRLSDQWFVKMEPLARPALQGVRDGAIRVLPERWEAVYVNWLTGIRDWNISRQLWWGHRVPVWYCDECDPPQNIIVSREDITKCPYCECPVRQDEDVLDTWFSSWLWPISTLGWPNEQSPDLAAFYPTDTLVTAPEILFFWVARMVMSGYEFMGRAPFHTVYLTGTARDTQHRKMSKSLGNGVDPLDVVNLYGADALRWTLIAGMGMGADVILDPNDIDKSFATGRNFGTKLWNIGRFLLDRVGSEPVMPLSSIDPKSLTRADEWILARLDVAIEECDSALGPFRPTVPHDSPDARVWRENERYAGLRLNEYSEAARRFVWNELADWYLESVKSRLDVPGRDREVARTVLVHTFDNALRLLHPAVPFVTEALWQKLPNHEAGAFLAVAAWPKQRGTAESTAAREFEIVREAVLAIRQIRGDNAVPPGKAIEVLVRAAADTRDVFERESTTIGRLTRSEVRAADGQAVGAAAHAVLGGGTELIVPLAGLIDVEKECARLRNEVSELEKQITSREGRLSNPKYVERAPANVVANDRAILDEMKSKRGQLVDKVRSLCGA

Samples

Sample ID Description Type Environment
1 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
26 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
32 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
33 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
40 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
41 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
45 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
78 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
79 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
82 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
83 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
88 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
89 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
90 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
91 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
92 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
97 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
98 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
99 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
100 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
101 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
102 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
103 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
104 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
105 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
106 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
107 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
108 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
109 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
110 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
111 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
113 3300049677 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_A_3_control Metagenome Rhizosphere
114 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
117 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
118 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
119 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.68
Rhizosphere 97.77
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207707_10027029 3300025912 Bacteria 5015
2 Ga0070658_10003971 3300005327 Bacteria 12119
3 Ga0070658_10005575 3300005327 Bacteria 10213
4 Ga0070658_10008864 3300005327 Bacteria 8085
5 Ga0070683_100001442 3300005329 Bacteria 18266
6 Ga0070683_100002321 3300005329 Bacteria 15090
7 Ga0070683_100009293 3300005329 Bacteria 8402
8 Ga0070683_100012991 3300005329 Bacteria 7248
9 Ga0070670_100022040 3300005331 Bacteria 5482
10 Ga0070680_100007932 3300005336 Bacteria 8100
11 Ga0070680_100044484 3300005336 Bacteria 3608
12 Ga0068868_100004156 3300005338 Bacteria 10116
13 Ga0070660_100005416 3300005339 Bacteria 8835
14 Ga0070661_100038622 3300005344 Bacteria 3476
15 Ga0070668_100004859 3300005347 Bacteria 9957
16 Ga0070669_100002219 3300005353 Bacteria 14060
17 Ga0070659_100004149 3300005366 Bacteria 10331
18 Ga0070714_100005485 3300005435 Bacteria 9682
19 Ga0070694_100003200 3300005444 Bacteria 9770
20 Ga0070708_100000065 3300005445 Bacteria 69306
21 Ga0070663_100001546 3300005455 Bacteria 12687
22 Ga0070663_100039868 3300005455 Bacteria 3285
23 Ga0070681_10001928 3300005458 Bacteria 18721
24 Ga0070681_10005817 3300005458 Bacteria 11935
25 Ga0070681_10060284 3300005458 Bacteria 3772
26 Ga0070681_10098094 3300005458 Bacteria 2876
27 Ga0070698_100000270 3300005471 Bacteria 52642
28 Ga0070679_100001068 3300005530 Bacteria 23922
29 Ga0070679_100003377 3300005530 Bacteria 14629
30 Ga0070679_100094184 3300005530 Bacteria 2982
31 Ga0070684_100008113 3300005535 Bacteria 8196
32 Ga0070684_100030162 3300005535 Bacteria 4605
33 Ga0070697_100006084 3300005536 Bacteria 9334
34 Ga0068855_100024377 3300005563 Bacteria 7239
35 Ga0068855_100035374 3300005563 Bacteria 5949
36 Ga0070664_100014929 3300005564 Bacteria 6337
37 Ga0068857_100004320 3300005577 Bacteria 11984
38 Ga0068861_100026830 3300005719 Bacteria 4191
39 Ga0068851_10013452 3300005834 Bacteria 3873
40 Ga0068870_10002953 3300005840 Bacteria 7168
41 Ga0068863_100060362 3300005841 Bacteria 3586
42 Ga0068860_100005280 3300005843 Bacteria 13107
43 Ga0068862_100000723 3300005844 Bacteria 33454
44 Ga0068862_100005382 3300005844 Bacteria 10709
45 Ga0081539_10000221 3300005985 Bacteria 133216
46 Ga0075431_100022764 3300006847 Bacteria 6404
47 Ga0075429_100019942 3300006880 Bacteria 5814
48 Ga0075436_100001603 3300006914 Bacteria 15450
49 Ga0111539_10063899 3300009094 Bacteria 4356
50 Ga0105245_10057469 3300009098 Bacteria 3499
51 Ga0114129_10065758 3300009147 Bacteria 5060
52 Ga0105241_10000078 3300009174 Bacteria 72328
53 Ga0105248_10006562 3300009177 Bacteria 12759
54 Ga0105249_10000090 3300009553 Bacteria 127963
55 Ga0105249_10000522 3300009553 Bacteria 35402
56 Ga0105249_10057417 3300009553 Bacteria 3565
57 Ga0105239_10094325 3300010375 Bacteria 3305
58 Ga0157371_10018376 3300013102 Bacteria 5171
59 Ga0157370_10014137 3300013104 Bacteria 8184
60 Ga0157370_10021993 3300013104 Bacteria 6351
61 Ga0157370_10042488 3300013104 Bacteria 4381
62 Ga0157369_10023665 3300013105 Bacteria 6842
63 Ga0163162_10067252 3300013306 Bacteria 3633
64 Ga0157372_10008912 3300013307 Bacteria 10659
65 Ga0157372_10023112 3300013307 Bacteria 6737
66 Ga0157372_10027316 3300013307 Bacteria 6214
67 Ga0157379_10005924 3300014968 Bacteria 10526
68 Ga0157376_10009047 3300014969 Bacteria 7214
69 Ga0207656_10007307 3300025321 Bacteria 4015
70 Ga0207699_10004289 3300025906 Bacteria 6819
71 Ga0207645_10003964 3300025907 Bacteria 11051
72 Ga0207654_10000050 3300025911 Bacteria 88868
73 Ga0207707_10002262 3300025912 Bacteria 17417
74 Ga0207707_10006415 3300025912 Bacteria 10271
75 Ga0207707_10055831 3300025912 Bacteria 3435
76 Ga0207695_10001858 3300025913 Bacteria 33090
77 Ga0207695_10002366 3300025913 Bacteria 28013
78 Ga0207663_10028413 3300025916 Bacteria 3273
79 Ga0207660_10019444 3300025917 Bacteria 4541
80 Ga0207662_10015808 3300025918 Bacteria 4251
81 Ga0207657_10000525 3300025919 Bacteria 40596
82 Ga0207657_10030520 3300025919 Bacteria 4892
83 Ga0207652_10002142 3300025921 Bacteria 16930
84 Ga0207652_10013175 3300025921 Bacteria 6695
85 Ga0207681_10003104 3300025923 Bacteria 10440
86 Ga0207659_10019163 3300025926 Bacteria 4497
87 Ga0207700_10006424 3300025928 Bacteria 7095
88 Ga0207690_10013603 3300025932 Bacteria 4893
89 Ga0207690_10036995 3300025932 Bacteria 3166
90 Ga0207706_10007314 3300025933 Bacteria 10208
91 Ga0207691_10000839 3300025940 Bacteria 30609
92 Ga0207691_10007723 3300025940 Bacteria 10352
93 Ga0207691_10031886 3300025940 Bacteria 4918
94 Ga0207711_10014715 3300025941 Bacteria 6501
95 Ga0207689_10052408 3300025942 Bacteria 3362
96 Ga0207661_10006924 3300025944 Bacteria 8041
97 Ga0207661_10008396 3300025944 Bacteria 7380
98 Ga0207661_10016130 3300025944 Bacteria 5506
99 Ga0207661_10018333 3300025944 Bacteria 5201
100 Ga0207679_10004700 3300025945 Bacteria 8504
101 Ga0207679_10004795 3300025945 Bacteria 8426
102 Ga0207667_10004892 3300025949 Bacteria 16356
103 Ga0207667_10009315 3300025949 Bacteria 11581
104 Ga0207667_10041007 3300025949 Bacteria 4926
105 Ga0207712_10000612 3300025961 Bacteria 28259
106 Ga0207712_10002087 3300025961 Bacteria 13082
107 Ga0207640_10000743 3300025981 Bacteria 18743
108 Ga0207640_10006113 3300025981 Bacteria 6584
109 Ga0207640_10037684 3300025981 Bacteria 3044
110 Ga0207674_10000595 3300026116 Bacteria 47608
111 Ga0207674_10001304 3300026116 Bacteria 32593
112 Ga0207674_10006409 3300026116 Bacteria 13842
113 Ga0207674_10031666 3300026116 Bacteria 5552
114 Ga0207675_100001016 3300026118 Bacteria 27800
115 Ga0207675_100044336 3300026118 Bacteria 4156
116 Ga0207698_10009965 3300026142 Bacteria 6080
117 Ga0268265_10000882 3300028380 Bacteria 28038
118 Ga0268265_10004517 3300028380 Bacteria 9631
119 Ga0265323_10010109 3300028653 Bacteria 3830
120 Ga0307408_100009902 3300031548 Bacteria 6280
121 Ga0307408_100013166 3300031548 Bacteria 5490
122 Ga0307408_100016152 3300031548 Bacteria 4978
123 Ga0307408_100018550 3300031548 Bacteria 4672
124 Ga0307405_10024305 3300031731 Bacteria 3459
125 Ga0307413_10013866 3300031824 Bacteria 4072
126 Ga0307410_10008193 3300031852 Bacteria 5780
127 Ga0307406_10010086 3300031901 Bacteria 5319
128 Ga0307406_10016908 3300031901 Bacteria 4245
129 Ga0307407_10009361 3300031903 Bacteria 4557
130 Ga0307412_10002444 3300031911 Bacteria 10333
131 Ga0307412_10013062 3300031911 Bacteria 4857
132 Ga0307409_100000264 3300031995 Bacteria 21232
133 Ga0307409_100020245 3300031995 Bacteria 4530
134 Ga0307416_100000100 3300032002 Bacteria 54129
135 Ga0307416_100023831 3300032002 Bacteria 4452
136 Ga0307416_100027028 3300032002 Bacteria 4240
137 Ga0307414_10026578 3300032004 Bacteria 3727
138 Ga0307411_10011958 3300032005 Bacteria 4711
139 Ga0307411_10026927 3300032005 Bacteria 3469
140 Ga0307415_100000743 3300032126 Bacteria 14684
141 Ga0307415_100033924 3300032126 Bacteria 3317
142 Ga0373934_0002675 3300035086 Bacteria 6546
143 Ga0373931_0006033 3300035691 Bacteria 5641
144 Ga0373937_0002301 3300036401 Bacteria 15961
145 Ga0395899_0047771 3300037312 Bacteria 3186
146 Ga0395900_0006859 3300037418 Bacteria 11814
147 Ga0395901_0004589 3300038443 Bacteria 13949
148 Ga0436365_1467560 3300039437 Bacteria 4282
149 Ga0466966_0006613 3300044684 Bacteria 7672
150 Ga0453684_0001014 3300044712 Bacteria 90517
151 Ga0453684_0085620 3300044712 Bacteria 3915
152 Ga0466959_0006777 3300045049 Bacteria 7979
153 Ga0495580_0006745 3300046472 Bacteria 9317
154 Ga0495594_0005621 3300046499 Bacteria 6444
155 Ga0495618_0003204 3300046514 Bacteria 10252
156 Ga0495587_0002458 3300046536 Bacteria 12370
157 Ga0495645_0000336 3300046543 Bacteria 33467
158 Ga0495645_0004777 3300046543 Bacteria 9260
159 Ga0495667_0006254 3300046559 Bacteria 8072
160 Ga0495667_0014012 3300046559 Bacteria 5413
161 Ga0495667_0014814 3300046559 Bacteria 5270
162 Ga0495599_0011063 3300046678 Bacteria 5536
163 Ga0495613_0026901 3300046689 Bacteria 4283
164 Ga0495674_0011984 3300047319 Bacteria 8175
165 Ga0495672_0006399 3300047320 Bacteria 9143
166 Ga0495684_0010222 3300047471 Bacteria 7260
167 Ga0496112_0010488 3300048915 Bacteria 8405
168 Ga0496112_0036764 3300048915 Bacteria 4777
169 Ga0496113_0037827 3300048916 Bacteria 3544
170 Ga0501033_0017804 3300049570 Bacteria 5365
171 Ga0501070_0009272 3300049586 Bacteria 8324
172 Ga0501247_000399 3300049677 Bacteria 3340
173 Ga0501261_001051 3300049690 Bacteria 3385
174 Ga0501044_0005408 3300049823 Bacteria 14186
175 nmdc:mga05p37_115582_c1 3300050507 Bacteria 3298
176 nmdc:mga09592_22926_c1 3300050508 Bacteria 5151
177 nmdc:mga06r32_112008_c1 3300050510 Bacteria 2685
178 nmdc:mga06r32_16060_c1 3300050510 Bacteria 6816
179 nmdc:mga08y16_3008_c1 3300050511 Bacteria 17388
180 Ga0207707_10027029
181 Ga0070658_10003971
182 Ga0070658_10005575
183 Ga0070658_10008864
184 Ga0070683_100001442
185 Ga0070683_100002321
186 Ga0070683_100009293
187 Ga0070683_100012991
188 Ga0070670_100022040
189 Ga0070680_100007932
190 Ga0070680_100044484
191 Ga0068868_100004156
192 Ga0070660_100005416
193 Ga0070661_100038622
194 Ga0070668_100004859
195 Ga0070669_100002219
196 Ga0070659_100004149
197 Ga0070714_100005485
198 Ga0070694_100003200
199 Ga0070708_100000065
200 Ga0070663_100001546
201 Ga0070663_100039868
202 Ga0070681_10001928
203 Ga0070681_10005817
204 Ga0070681_10060284
205 Ga0070681_10098094
206 Ga0070698_100000270
207 Ga0070679_100001068
208 Ga0070679_100003377
209 Ga0070679_100094184
210 Ga0070684_100008113
211 Ga0070684_100030162
212 Ga0070697_100006084
213 Ga0068855_100024377
214 Ga0068855_100035374
215 Ga0070664_100014929
216 Ga0068857_100004320
217 Ga0068861_100026830
218 Ga0068851_10013452
219 Ga0068870_10002953
220 Ga0068863_100060362
221 Ga0068860_100005280
222 Ga0068862_100000723
223 Ga0068862_100005382
224 Ga0081539_10000221
225 Ga0075431_100022764
226 Ga0075429_100019942
227 Ga0075436_100001603
228 Ga0111539_10063899
229 Ga0105245_10057469
230 Ga0114129_10065758
231 Ga0105241_10000078
232 Ga0105248_10006562
233 Ga0105249_10000090
234 Ga0105249_10000522
235 Ga0105249_10057417
236 Ga0105239_10094325
237 Ga0157371_10018376
238 Ga0157370_10014137
239 Ga0157370_10021993
240 Ga0157370_10042488
241 Ga0157369_10023665
242 Ga0163162_10067252
243 Ga0157372_10008912
244 Ga0157372_10023112
245 Ga0157372_10027316
246 Ga0157379_10005924
247 Ga0157376_10009047
248 Ga0207656_10007307
249 Ga0207699_10004289
250 Ga0207645_10003964
251 Ga0207654_10000050
252 Ga0207707_10002262
253 Ga0207707_10006415
254 Ga0207707_10055831
255 Ga0207695_10001858
256 Ga0207695_10002366
257 Ga0207663_10028413
258 Ga0207660_10019444
259 Ga0207662_10015808
260 Ga0207657_10000525
261 Ga0207657_10030520
262 Ga0207652_10002142
263 Ga0207652_10013175
264 Ga0207681_10003104
265 Ga0207659_10019163
266 Ga0207700_10006424
267 Ga0207690_10013603
268 Ga0207690_10036995
269 Ga0207706_10007314
270 Ga0207691_10000839
271 Ga0207691_10007723
272 Ga0207691_10031886
273 Ga0207711_10014715
274 Ga0207689_10052408
275 Ga0207661_10006924
276 Ga0207661_10008396
277 Ga0207661_10016130
278 Ga0207661_10018333
279 Ga0207679_10004700
280 Ga0207679_10004795
281 Ga0207667_10004892
282 Ga0207667_10009315
283 Ga0207667_10041007
284 Ga0207712_10000612
285 Ga0207712_10002087
286 Ga0207640_10000743
287 Ga0207640_10006113
288 Ga0207640_10037684
289 Ga0207674_10000595
290 Ga0207674_10001304
291 Ga0207674_10006409
292 Ga0207674_10031666
293 Ga0207675_100001016
294 Ga0207675_100044336
295 Ga0207698_10009965
296 Ga0268265_10000882
297 Ga0268265_10004517
298 Ga0265323_10010109
299 Ga0307408_100009902
300 Ga0307408_100013166
301 Ga0307408_100016152
302 Ga0307408_100018550
303 Ga0307405_10024305
304 Ga0307413_10013866
305 Ga0307410_10008193
306 Ga0307406_10010086
307 Ga0307406_10016908
308 Ga0307407_10009361
309 Ga0307412_10002444
310 Ga0307412_10013062
311 Ga0307409_100000264
312 Ga0307409_100020245
313 Ga0307416_100000100
314 Ga0307416_100023831
315 Ga0307416_100027028
316 Ga0307414_10026578
317 Ga0307411_10011958
318 Ga0307411_10026927
319 Ga0307415_100000743
320 Ga0307415_100033924
321 Ga0373934_0002675
322 Ga0373931_0006033
323 Ga0373937_0002301
324 Ga0395899_0047771
325 Ga0395900_0006859
326 Ga0395901_0004589
327 Ga0436365_1467560
328 Ga0466966_0006613
329 Ga0453684_0001014
330 Ga0453684_0085620
331 Ga0466959_0006777
332 Ga0495580_0006745
333 Ga0495594_0005621
334 Ga0495618_0003204
335 Ga0495587_0002458
336 Ga0495645_0000336
337 Ga0495645_0004777
338 Ga0495667_0006254
339 Ga0495667_0014012
340 Ga0495667_0014814
341 Ga0495599_0011063
342 Ga0495613_0026901
343 Ga0495674_0011984
344 Ga0495672_0006399
345 Ga0495684_0010222
346 Ga0496112_0010488
347 Ga0496112_0036764
348 Ga0496113_0037827
349 Ga0501033_0017804
350 Ga0501070_0009272
351 Ga0501247_000399
352 Ga0501261_001051
353 Ga0501044_0005408
354 nmdc:mga05p37_115582_c1
355 nmdc:mga09592_22926_c1
356 nmdc:mga06r32_112008_c1
357 nmdc:mga06r32_16060_c1
358 nmdc:mga08y16_3008_c1

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10458

Val_tRNA-synt_C

Valyl tRNA synthetase tRNA binding arm

902

967

0.96

PF00133

tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

61

626

0.94

PF08264

Anticodon_1

Anticodon-binding domain of tRNA ligase

708

846

0.87

PF09334

tRNA-synt_1g

tRNA synthetases class I (M)

89

245

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wka-assembly1.cif.gz_A structural basis for non-cognate amino acid discrimination by the valyl-trna synthetase editing domain 0.9142 214 354
1wka-assembly1.cif.gz_A structural basis for non-cognate amino acid discrimination by the valyl-trna synthetase editing domain 0.8957 214 354
4k48-assembly1.cif.gz_A structure of the streptococcus pneumoniae leucyl-trna synthetase editing domain 0.8469 216 350
7n11-assembly1.cif.gz_A crystal structure of the m. abscessus leurs editing domain in complex with epetraborole-amp adduct 0.8234 216 348
1gax-assembly2.cif.gz_B crystal structure of thermus thermophilus valyl-trna synthetase complexed with trna(val) and valyl-adenylate analogue 0.8229 16 902
ID Description Score Start End Superfamily
af_Q2FXR8_200_287_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9844 218 306 3.90.740.10
af_Q2FXR8_200_287_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9735 218 306 3.90.740.10
af_Q8IKL5_71_238_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9359 52 208 3.40.50.620
af_Q58413_6_194_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9222 19 208 3.40.50.620
af_O14160_232_372_3.90.740.10 Alpha Beta;Alpha-Beta Complex;Isoleucyl-tRNA Synthetase; domain 2;Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.9201 216 350 3.90.740.10
ID Description Score Start End GO Terms
AF-A0A523R741-F1-model_v4 Valine--tRNA ligase (EC 6.1.1.9) 0.9394 15 694 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
GO:0016020
AF-A0A523R741-F1-model_v4 Valine--tRNA ligase (EC 6.1.1.9) 0.9297 15 694 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
GO:0016020
AF-A0A5C2LH48-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9276 235 412 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A2V6TXX2-F1-model_v4 valine--tRNA ligase (EC 6.1.1.9) (Valyl-tRNA synthetase) 0.9241 15 204 GO:0004832
GO:0005524
GO:0005829
GO:0006438
AF-A0A257UEL8-F1-model_v4 Valine--tRNA ligase (EC 6.1.1.9) 0.9236 15 699 GO:0002161
GO:0004832
GO:0005524
GO:0005829
GO:0006438

Map