F273273

General Info

Members Datasets Scaffolds Average Seq Length
179 108 358 368

Family's Representative Sequence

Representative Sequence 3300005339|Ga0070660_100152170|Ga0070660_1001521701
Length 401
Sequence VRSGRSTAERRSRIDWAWKGGFELVRALGVIALCSGVALSSLAQRAAPRLAAPNQPDNMKEATAPAQPILKVFQFPADQIPRIDGKDDDWAIVPETYAVTLANMHDDEKKHARPDPKDLEIKVKVGWVKGLNRLYFLYEAYDNYWDFADPGLHNDTFEVVVDGDRSGGPLIPRFRNNTDQDPWDAHFSMHGVQAQNYHIFTPSEGKDWALAWGCQPWDKELPWANHAQSYSFRPGQSGRYVLEFYITPFDYAACEGPLRSVESRLDENKIVGLSWAVIDYDGATDGKNNGFWNLSPEHTMYGNSTYLREFRLMPLEPQFRKPMDARWSFKVINPARRVVAFQDESTGQITGWKWDFGDGSQSTEQNPTHQYKLPGEYVVVLNVEGPSGRARFSRIWDVTLR

Samples

Sample ID Description Type Environment
1 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
2 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
12 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
13 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
23 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
24 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
32 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
33 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
34 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
52 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
53 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
54 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
55 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
56 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
57 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
58 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
59 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
60 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
61 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
62 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
63 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
64 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
65 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
66 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
67 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
68 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
69 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
70 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
71 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
72 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
73 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
79 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
80 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
81 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
82 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
83 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
84 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
85 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
86 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
87 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
100 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
101 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
102 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 2738543023 Pedobacter sp. OK628 Isolate Unclassified
105 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
106 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
107 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
108 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.21
Metatranscriptomes 0
Isolates 2.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.12
Nodule 0
Rhizoplane 0
Rhizosphere 91.62
Stem 0
Stem Tuber 0
Unclassified 13.41

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070660_100152170 3300005339 Unclassified 1861
2 SwRhRL3b_contig_3926030 2162886006 Bacteria 1961
3 JGI24739J22299_10000733 3300001989 Bacteria 11902
4 rootH2_10334857 3300003320 Bacteria 1207
5 rootL2_10299202 3300003322 Unclassified 2226
6 rootH1_10189487 3300003323 Bacteria 4034
7 Ga0070658_10001992 3300005327 Bacteria 17162
8 Ga0070658_10018776 3300005327 Bacteria 5538
9 Ga0070658_10054506 3300005327 Bacteria 3247
10 Ga0070680_100215718 3300005336 Unclassified 1619
11 Ga0070659_100056336 3300005366 Unclassified 3100
12 Ga0070714_100021917 3300005435 Bacteria 5231
13 Ga0070700_100136542 3300005441 Bacteria 1661
14 Ga0070663_100009127 3300005455 Bacteria 6130
15 Ga0070681_10293636 3300005458 Bacteria 1535
16 Ga0070679_100060679 3300005530 Bacteria 3768
17 Ga0068853_100023895 3300005539 Bacteria 5122
18 Ga0070665_100416407 3300005548 Bacteria 1352
19 Ga0068855_100002408 3300005563 Bacteria 23068
20 Ga0068855_100006275 3300005563 Bacteria 14487
21 Ga0068855_100067465 3300005563 Bacteria 4167
22 Ga0068855_100144063 3300005563 Unclassified 2714
23 Ga0068855_100176442 3300005563 Bacteria 2418
24 Ga0068854_100147418 3300005578 Bacteria 1812
25 Ga0068852_100006827 3300005616 Bacteria 8292
26 Ga0068858_100140836 3300005842 Bacteria 2264
27 Ga0068858_100314126 3300005842 Bacteria 1497
28 Ga0070717_10000060 3300006028 Bacteria 92521
29 Ga0075428_100000014 3300006844 Bacteria 166411
30 Ga0105240_10000002 3300009093 Bacteria 1924170
31 Ga0105240_10000274 3300009093 Bacteria 102157
32 Ga0105240_10001662 3300009093 Bacteria 37766
33 Ga0105240_10030805 3300009093 Bacteria 6969
34 Ga0105240_10635944 3300009093 Bacteria 1171
35 Ga0105240_10638537 3300009093 Unclassified 1168
36 Ga0111539_10000019 3300009094 Bacteria 266927
37 Ga0105241_10189380 3300009174 Bacteria 1712
38 Ga0105241_10235939 3300009174 Bacteria 1544
39 Ga0105238_10012738 3300009551 Bacteria 8489
40 Ga0105238_10044583 3300009551 Bacteria 4483
41 Ga0105238_10071617 3300009551 Bacteria 3464
42 Ga0105238_10099955 3300009551 Bacteria 2884
43 Ga0105238_10103496 3300009551 Bacteria 2828
44 Ga0105249_10173524 3300009553 Unclassified 2092
45 Ga0105239_10058253 3300010375 Unclassified 4238
46 Ga0105239_10250736 3300010375 Bacteria 1988
47 Ga0157373_10264003 3300013100 Bacteria 1218
48 Ga0157371_10153864 3300013102 Bacteria 1641
49 Ga0157370_10023139 3300013104 Bacteria 6176
50 Ga0157370_10065792 3300013104 Unclassified 3429
51 Ga0157369_10012631 3300013105 Bacteria 9576
52 Ga0157369_10014029 3300013105 Bacteria 9052
53 Ga0157369_10053169 3300013105 Bacteria 4378
54 Ga0157369_10085897 3300013105 Bacteria 3361
55 Ga0157372_10010144 3300013307 Bacteria 10004
56 Ga0157372_10032615 3300013307 Bacteria 5712
57 Ga0157372_10033792 3300013307 Bacteria 5619
58 Ga0157372_10047180 3300013307 Bacteria 4785
59 Ga0157372_10091762 3300013307 Bacteria 3454
60 Ga0163163_10081590 3300014325 Bacteria 3236
61 Ga0157380_10014707 3300014326 Bacteria 5731
62 Ga0207705_10074807 3300025909 Bacteria 2459
63 Ga0207707_10110020 3300025912 Bacteria 2408
64 Ga0207695_10000002 3300025913 Bacteria 2188391
65 Ga0207695_10000106 3300025913 Bacteria 253001
66 Ga0207657_10121849 3300025919 Unclassified 2145
67 Ga0207657_10144209 3300025919 Bacteria 1943
68 Ga0207657_10174868 3300025919 Bacteria 1738
69 Ga0207690_10110673 3300025932 Unclassified 1978
70 Ga0207711_10126408 3300025941 Bacteria 2287
71 Ga0207667_10002527 3300025949 Bacteria 22775
72 Ga0207667_10070568 3300025949 Unclassified 3635
73 Ga0207667_10156544 3300025949 Unclassified 2344
74 Ga0207667_10202291 3300025949 Bacteria 2037
75 Ga0207651_10028233 3300025960 Bacteria 3537
76 Ga0207712_10083180 3300025961 Unclassified 2335
77 Ga0207703_10109968 3300026035 Bacteria 2350
78 Ga0207703_10256127 3300026035 Bacteria 1580
79 Ga0207678_10000682 3300026067 Bacteria 31067
80 Ga0207678_10001594 3300026067 Bacteria 20861
81 Ga0207698_10030896 3300026142 Bacteria 3859
82 Ga0209995_1013778 3300027471 Bacteria 1325
83 Ga0207428_10000052 3300027907 Bacteria 176270
84 Ga0268266_10076474 3300028379 Bacteria 2910
85 Ga0265319_1002069 3300028563 Bacteria 11269
86 Ga0265319_1008107 3300028563 Bacteria 4638
87 Ga0265319_1017264 3300028563 Bacteria 2747
88 Ga0265334_10023486 3300028573 Bacteria 2507
89 Ga0265318_10015096 3300028577 Bacteria 3224
90 Ga0265323_10000015 3300028653 Bacteria 105428
91 Ga0265323_10001003 3300028653 Bacteria 14700
92 Ga0265323_10021090 3300028653 Unclassified 2500
93 Ga0265322_10000505 3300028654 Bacteria 15146
94 Ga0265330_10008527 3300031235 Unclassified 4930
95 Ga0265330_10013272 3300031235 Bacteria 3843
96 Ga0265330_10013733 3300031235 Bacteria 3768
97 Ga0265330_10088713 3300031235 Bacteria 1329
98 Ga0265320_10000015 3300031240 Bacteria 198537
99 Ga0265320_10000125 3300031240 Bacteria 67011
100 Ga0265325_10032393 3300031241 Unclassified 2791
101 Ga0265325_10053286 3300031241 Unclassified 2075
102 Ga0265316_10002284 3300031344 Bacteria 20050
103 Ga0265316_10003355 3300031344 Bacteria 16230
104 Ga0265316_10007511 3300031344 Bacteria 10262
105 Ga0265316_10009666 3300031344 Bacteria 8858
106 Ga0265316_10047735 3300031344 Bacteria 3385
107 Ga0265316_10077860 3300031344 Archaea 2546
108 Ga0265316_10093663 3300031344 Unclassified 2289
109 Ga0265313_10002588 3300031595 Bacteria 15420
110 Ga0265313_10008823 3300031595 Bacteria 6641
111 Ga0307508_10016663 3300031616 Bacteria 6686
112 Ga0265314_10081897 3300031711 Bacteria 2124
113 Ga0265314_10093709 3300031711 Bacteria 1949
114 Ga0265342_10000787 3300031712 Bacteria 32054
115 Ga0265342_10005844 3300031712 Bacteria 9291
116 Ga0265342_10012801 3300031712 Bacteria 5663
117 Ga0316578_10030555 3300031728 Bacteria 3063
118 Ga0316577_10009222 3300031733 Bacteria 5305
119 Ga0307414_10210230 3300032004 Bacteria 1589
120 Ga0373943_0241253 3300035170 Unclassified 1013
121 Ga0316584_0000659 3300036712 Bacteria 18848
122 Ga0395900_0524613 3300037418 Bacteria 1132
123 Ga0400483_077206 3300039062 Bacteria 4775
124 Ga0400483_127342 3300039062 Bacteria 1605
125 Ga0400483_163479 3300039062 Bacteria 11467
126 Ga0400489_38649 3300039093 Unclassified 4530
127 Ga0400489_77454 3300039093 Bacteria 5343
128 Ga0451577_0148092 3300042876 Bacteria 2112
129 Ga0451577_0245017 3300042876 Bacteria 1622
130 Ga0453683_0001903 3300044673 Bacteria 17035
131 Ga0466966_0046098 3300044684 Bacteria 2785
132 Ga0453684_0018911 3300044712 Bacteria 10536
133 Ga0453684_0141881 3300044712 Bacteria 2867
134 Ga0453684_0415792 3300044712 Bacteria 1503
135 Ga0466959_0044587 3300045049 Bacteria 3268
136 Ga0451576_0096820 3300045051 Bacteria 3069
137 Ga0495616_0023119 3300046513 Bacteria 3348
138 Ga0495630_0288020 3300046517 Bacteria 1255
139 Ga0495640_0116787 3300046533 Bacteria 1738
140 Ga0495645_0006325 3300046543 Bacteria 8214
141 Ga0495613_0162880 3300046689 Bacteria 1586
142 Ga0495604_0082921 3300047317 Bacteria 2397
143 Ga0495674_0015836 3300047319 Bacteria 7039
144 Ga0495675_0003938 3300047444 Bacteria 8997
145 Ga0495684_0015774 3300047471 Bacteria 5814
146 Ga0501033_0028049 3300049570 Bacteria 4231
147 Ga0501034_0000838 3300049571 Bacteria 45591
148 Ga0501034_0002230 3300049571 Bacteria 23871
149 Ga0501034_0110858 3300049571 Bacteria 2735
150 Ga0501034_0124640 3300049571 Bacteria 2562
151 Ga0501037_0005862 3300049573 Bacteria 8975
152 Ga0501037_0049786 3300049573 Bacteria 3067
153 Ga0501038_0000259 3300049574 Bacteria 44582
154 Ga0501046_0024332 3300049580 Bacteria 4969
155 Ga0501046_0050426 3300049580 Bacteria 3288
156 Ga0501046_0192518 3300049580 Unclassified 1520
157 Ga0501047_0042373 3300049581 Bacteria 4399
158 Ga0501070_0023412 3300049586 Bacteria 5174
159 Ga0501070_0055586 3300049586 Bacteria 3281
160 Ga0501073_0009118 3300049589 Bacteria 7322
161 Ga0501073_0162894 3300049589 Bacteria 1545
162 Ga0501080_0016421 3300049742 Bacteria 6837
163 Ga0501080_0370954 3300049742 Unclassified 1290
164 Ga0501083_0026117 3300049744 Bacteria 4040
165 Ga0501035_0014226 3300049822 Bacteria 7344
166 Ga0501035_0254631 3300049822 Bacteria 1490
167 Ga0501044_0000724 3300049823 Bacteria 39820
168 Ga0501044_0005588 3300049823 Bacteria 13958
169 Ga0501044_0023849 3300049823 Bacteria 6503
170 nmdc:mga08y16_14_c1 3300050511 Bacteria 398067
171 Ga0495601_0240250 3300053077 Unclassified 1183
172 Ga0500595_011627 3300053119 Bacteria 3435
173 Ga0500559_0010533 3300053136 Bacteria 3967
174 Ga0501082_0264249 3300060353 Bacteria 1497
175 2739304820 2738543023 Bacteria 6767879
176 2788433763 2786546940 Bacteria 6396474
177 2919687263 2919683626 Bacteria 5534354
178 2977234887 2977232053 Bacteria 5485925
179 8056441828 8056440228 Bacteria 4946504
180 Ga0070660_100152170
181 SwRhRL3b_contig_3926030
182 JGI24739J22299_10000733
183 rootH2_10334857
184 rootL2_10299202
185 rootH1_10189487
186 Ga0070658_10001992
187 Ga0070658_10018776
188 Ga0070658_10054506
189 Ga0070680_100215718
190 Ga0070659_100056336
191 Ga0070714_100021917
192 Ga0070700_100136542
193 Ga0070663_100009127
194 Ga0070681_10293636
195 Ga0070679_100060679
196 Ga0068853_100023895
197 Ga0070665_100416407
198 Ga0068855_100002408
199 Ga0068855_100006275
200 Ga0068855_100067465
201 Ga0068855_100144063
202 Ga0068855_100176442
203 Ga0068854_100147418
204 Ga0068852_100006827
205 Ga0068858_100140836
206 Ga0068858_100314126
207 Ga0070717_10000060
208 Ga0075428_100000014
209 Ga0105240_10000002
210 Ga0105240_10000274
211 Ga0105240_10001662
212 Ga0105240_10030805
213 Ga0105240_10635944
214 Ga0105240_10638537
215 Ga0111539_10000019
216 Ga0105241_10189380
217 Ga0105241_10235939
218 Ga0105238_10012738
219 Ga0105238_10044583
220 Ga0105238_10071617
221 Ga0105238_10099955
222 Ga0105238_10103496
223 Ga0105249_10173524
224 Ga0105239_10058253
225 Ga0105239_10250736
226 Ga0157373_10264003
227 Ga0157371_10153864
228 Ga0157370_10023139
229 Ga0157370_10065792
230 Ga0157369_10012631
231 Ga0157369_10014029
232 Ga0157369_10053169
233 Ga0157369_10085897
234 Ga0157372_10010144
235 Ga0157372_10032615
236 Ga0157372_10033792
237 Ga0157372_10047180
238 Ga0157372_10091762
239 Ga0163163_10081590
240 Ga0157380_10014707
241 Ga0207705_10074807
242 Ga0207707_10110020
243 Ga0207695_10000002
244 Ga0207695_10000106
245 Ga0207657_10121849
246 Ga0207657_10144209
247 Ga0207657_10174868
248 Ga0207690_10110673
249 Ga0207711_10126408
250 Ga0207667_10002527
251 Ga0207667_10070568
252 Ga0207667_10156544
253 Ga0207667_10202291
254 Ga0207651_10028233
255 Ga0207712_10083180
256 Ga0207703_10109968
257 Ga0207703_10256127
258 Ga0207678_10000682
259 Ga0207678_10001594
260 Ga0207698_10030896
261 Ga0209995_1013778
262 Ga0207428_10000052
263 Ga0268266_10076474
264 Ga0265319_1002069
265 Ga0265319_1008107
266 Ga0265319_1017264
267 Ga0265334_10023486
268 Ga0265318_10015096
269 Ga0265323_10000015
270 Ga0265323_10001003
271 Ga0265323_10021090
272 Ga0265322_10000505
273 Ga0265330_10008527
274 Ga0265330_10013272
275 Ga0265330_10013733
276 Ga0265330_10088713
277 Ga0265320_10000015
278 Ga0265320_10000125
279 Ga0265325_10032393
280 Ga0265325_10053286
281 Ga0265316_10002284
282 Ga0265316_10003355
283 Ga0265316_10007511
284 Ga0265316_10009666
285 Ga0265316_10047735
286 Ga0265316_10077860
287 Ga0265316_10093663
288 Ga0265313_10002588
289 Ga0265313_10008823
290 Ga0307508_10016663
291 Ga0265314_10081897
292 Ga0265314_10093709
293 Ga0265342_10000787
294 Ga0265342_10005844
295 Ga0265342_10012801
296 Ga0316578_10030555
297 Ga0316577_10009222
298 Ga0307414_10210230
299 Ga0373943_0241253
300 Ga0316584_0000659
301 Ga0395900_0524613
302 Ga0400483_077206
303 Ga0400483_127342
304 Ga0400483_163479
305 Ga0400489_38649
306 Ga0400489_77454
307 Ga0451577_0148092
308 Ga0451577_0245017
309 Ga0453683_0001903
310 Ga0466966_0046098
311 Ga0453684_0018911
312 Ga0453684_0141881
313 Ga0453684_0415792
314 Ga0466959_0044587
315 Ga0451576_0096820
316 Ga0495616_0023119
317 Ga0495630_0288020
318 Ga0495640_0116787
319 Ga0495645_0006325
320 Ga0495613_0162880
321 Ga0495604_0082921
322 Ga0495674_0015836
323 Ga0495675_0003938
324 Ga0495684_0015774
325 Ga0501033_0028049
326 Ga0501034_0000838
327 Ga0501034_0002230
328 Ga0501034_0110858
329 Ga0501034_0124640
330 Ga0501037_0005862
331 Ga0501037_0049786
332 Ga0501038_0000259
333 Ga0501046_0024332
334 Ga0501046_0050426
335 Ga0501046_0192518
336 Ga0501047_0042373
337 Ga0501070_0023412
338 Ga0501070_0055586
339 Ga0501073_0009118
340 Ga0501073_0162894
341 Ga0501080_0016421
342 Ga0501080_0370954
343 Ga0501083_0026117
344 Ga0501035_0014226
345 Ga0501035_0254631
346 Ga0501044_0000724
347 Ga0501044_0005588
348 Ga0501044_0023849
349 nmdc:mga08y16_14_c1
350 Ga0495601_0240250
351 Ga0500595_011627
352 Ga0500559_0010533
353 Ga0501082_0264249
354 2739304820
355 2788433763
356 2919687263
357 2977234887
358 8056441828

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF18911

PKD_4

PKD domain

326

400

0.89

PF00801

PKD

PKD domain

328

394

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7kv7-assembly1.cif.gz_AAA surface glycan-binding protein b from bacteroides fluxus in complex with laminaritriose 0.8864 287 361
4l9d-assembly2.cif.gz_B crystal structure of the pkd1 domain from vibrio cholerae metalloprotease prtv 0.8705 282 361
4u6t-assembly1.cif.gz_A crystal structure of the clostridium histolyticum colh collagenase polycystic kidney disease-like domain 2a at 1.76 angstrom resolution 0.8655 284 354
2c26-assembly1.cif.gz_A structural basis for the promiscuous specificity of the carbohydrate- binding modules from the beta-sandwich super family 0.8441 279 355
4tn9-assembly1.cif.gz_A crystal structure of clostridium histolyticum colg collagenase polycystic kidney disease-like domain at 1.4 angstrom resolution 0.8411 284 362
ID Description Score Start End Superfamily
af_Q58863_810_887_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.9092 286 362 2.60.40.10
af_Q58863_810_887_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8867 286 362 2.60.40.10
1l0qA02 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8791 284 355 2.60.40.10
af_Q58863_721_807_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8651 282 355 2.60.40.10
af_P98161_2064_2143_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.8619 297 355 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A2M7E1K8-F1-model_v4 PKD domain-containing protein 0.9828 298 362
AF-A0A101IS40-F1-model_v4 Cell surface protein 0.9811 299 362 GO:0030246
AF-A0A7Y2TFI5-F1-model_v4 T9SS type A sorting domain-containing protein 0.9692 280 362
AF-X1P6M4-F1-model_v4 PKD domain-containing protein 0.9583 303 362
AF-A0A2M7A6B4-F1-model_v4 Carbohydrate-binding domain-containing protein 0.9573 3 275

Map