F272668

General Info

Members Datasets Scaffolds Average Seq Length
178 147 356 366

Family's Representative Sequence

Representative Sequence 3300048912|Ga0496109_0065553|Ga0496109_0065553_1882_3210
Length 413
Sequence MRRTTASIGILGITAACSLDSPPTSGAKLPKEVNLGKTSGKVGVILPDTTSSTRYTQYDAPLLTKALKAAGITPDVQNAQGDKNKFASIAQSMIGEGAKVLIIDSIDAASGAGVEKQAQKAGVKVIDYDRVNLGGVAPYYVSFDNEDVGKLQAQTLLDCLSAQGVDSPNIIMMNGGTDVDNNAVLFQKGAHEVLDSSGATIVAEQTVKGWDVANAAPAFNQALTAAGGKVDGVLAANDDIANAVIGVLKNNGLAGKVAITGQDSGTEGLQNIVTGMQSMTVFKNVKLEANAAAQLAIALIAGKDPQAAGMDLKPFDDPESPNHKIDALLLPAQVITQANVNDVIDAGALTAADICKGIESDCSTLGIQSKSETSRSRLRFCVGHVPTQDRGSRLRNQQYRGRPDNVRSPTFPA

Samples

Sample ID Description Type Environment
1 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
2 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
51 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
75 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
81 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
82 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
85 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
86 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
90 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
91 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
92 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
93 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
94 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
97 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
98 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
99 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
100 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
104 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
107 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
108 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
109 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
113 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
114 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
115 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
116 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
117 3300059605 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
118 3300059622 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 222R_AD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
119 3300059630 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
121 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
122 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
123 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
124 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300059655 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 152R_CD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
126 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
127 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
128 2501939600 Micromonospora sp. L5 Isolate Unclassified
129 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
130 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
131 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
132 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
133 2855683550 Micromonospora sp. RP3T Isolate Unclassified
134 2856858025 Micromonospora aurantiaca 110B(2018) Isolate Unclassified
135 2858868258 Micromonospora sp. MH33 Isolate Unclassified
136 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
137 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
138 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
139 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
140 2902582711 Micromonospora sp. AP08 Isolate Unclassified
141 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
142 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
143 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
144 649633069 Micromonospora sp. L5 Isolate Unclassified
145 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
146 8055412473 Micromonospora phytophila DSM 105363 Isolate Nodule
147 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.97
Metatranscriptomes 11.8
Isolates 11.24

Biome Distribution

Category Percentage (%)
Aerial Root 0.56
Bulb 0
Endosphere 1.69
Nodule 0.56
Rhizoplane 8.99
Rhizosphere 79.21
Stem 0
Stem Tuber 0.56
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0496109_0065553 3300048912 Bacteria 3325
2 JGI25405J52794_10001491 3300003911 Bacteria 3862
3 Ga0070658_10199715 3300005327 Bacteria 1687
4 Ga0070683_100014212 3300005329 Bacteria 6957
5 Ga0070680_100124407 3300005336 Bacteria 2154
6 Ga0070682_100006463 3300005337 Bacteria 6591
7 Ga0068868_100160929 3300005338 Bacteria 1854
8 Ga0070660_100053313 3300005339 Bacteria 3119
9 Ga0070692_10015818 3300005345 Bacteria 3577
10 Ga0070659_100018976 3300005366 Bacteria 5199
11 Ga0070659_100022286 3300005366 Bacteria 4835
12 Ga0070714_100109500 3300005435 Bacteria 2444
13 Ga0070679_100030119 3300005530 Bacteria 5357
14 Ga0070684_100003260 3300005535 Bacteria 12158
15 Ga0070684_100133804 3300005535 Bacteria 2238
16 Ga0070686_100161158 3300005544 Bacteria 1580
17 Ga0070665_100002233 3300005548 Bacteria 21582
18 Ga0070665_100130742 3300005548 Bacteria 2513
19 Ga0068855_100095146 3300005563 Bacteria 3433
20 Ga0070664_100143494 3300005564 Bacteria 2104
21 Ga0068857_100007005 3300005577 Bacteria 9702
22 Ga0068856_100013871 3300005614 Bacteria 7794
23 Ga0068852_100127404 3300005616 Bacteria 2340
24 Ga0068864_100043323 3300005618 Bacteria 3854
25 Ga0068851_10120040 3300005834 Bacteria 1412
26 Ga0081455_10001896 3300005937 Bacteria 25156
27 Ga0075365_10021232 3300006038 Bacteria 4047
28 Ga0097621_100043466 3300006237 Bacteria 3622
29 Ga0075428_100038312 3300006844 Bacteria 5275
30 Ga0075430_100003337 3300006846 Bacteria 13442
31 Ga0075431_100014979 3300006847 Bacteria 7848
32 Ga0075429_100013107 3300006880 Bacteria 7193
33 Ga0068865_100021142 3300006881 Bacteria 4230
34 Ga0111539_10020026 3300009094 Bacteria 8242
35 Ga0114129_10044079 3300009147 Bacteria 6275
36 Ga0105242_10022951 3300009176 Bacteria 4915
37 Ga0105238_10198198 3300009551 Bacteria 1983
38 Ga0105249_10038100 3300009553 Bacteria 4362
39 Ga0105249_10255994 3300009553 Bacteria 1737
40 Ga0105239_10005059 3300010375 Bacteria 15578
41 Ga0105246_10021714 3300011119 Bacteria 4134
42 Ga0157370_10111822 3300013104 Bacteria 2553
43 Ga0157369_10240720 3300013105 Bacteria 1890
44 Ga0163162_10125481 3300013306 Bacteria 2673
45 Ga0157372_10130039 3300013307 Bacteria 2896
46 Ga0157372_10255025 3300013307 Bacteria 2036
47 Ga0157375_10007170 3300013308 Bacteria 9744
48 Ga0157375_10056920 3300013308 Bacteria 3863
49 Ga0163163_10111011 3300014325 Bacteria 2771
50 Ga0157379_10039817 3300014968 Bacteria 4194
51 Ga0163161_10146971 3300017792 Bacteria 1789
52 Ga0197907_10130423 3300020069 Bacteria 1329
53 Ga0197907_11133954 3300020069 Bacteria 2707
54 Ga0206354_10764489 3300020081 Bacteria 1646
55 Ga0206353_11117571 3300020082 Bacteria 5843
56 Ga0154015_1371766 3300020610 Bacteria 1537
57 Ga0154015_1701149 3300020610 Bacteria 2297
58 Ga0213876_10012023 3300021384 Bacteria 4610
59 Ga0207688_10016491 3300025901 Bacteria 4007
60 Ga0207647_10009904 3300025904 Bacteria 6749
61 Ga0207660_10050610 3300025917 Bacteria 2951
62 Ga0207657_10025450 3300025919 Bacteria 5458
63 Ga0207649_10159266 3300025920 Bacteria 1563
64 Ga0207652_10015367 3300025921 Bacteria 6217
65 Ga0207694_10261824 3300025924 Bacteria 1417
66 Ga0207690_10010917 3300025932 Bacteria 5415
67 Ga0207686_10011964 3300025934 Bacteria 4762
68 Ga0207704_10059475 3300025938 Bacteria 2359
69 Ga0207689_10121467 3300025942 Bacteria 2148
70 Ga0207661_10011849 3300025944 Bacteria 6333
71 Ga0207679_10022869 3300025945 Bacteria 4264
72 Ga0207667_10087501 3300025949 Bacteria 3222
73 Ga0207712_10195201 3300025961 Bacteria 1601
74 Ga0207677_10050203 3300026023 Bacteria 2821
75 Ga0207703_10013775 3300026035 Bacteria 6302
76 Ga0207641_10339165 3300026088 Bacteria 1430
77 Ga0207676_10066976 3300026095 Bacteria 2867
78 Ga0207674_10006182 3300026116 Bacteria 14128
79 Ga0207698_10089878 3300026142 Bacteria 2510
80 Ga0207428_10054662 3300027907 Bacteria 3179
81 Ga0268266_10083960 3300028379 Bacteria 2780
82 Ga0268266_10240445 3300028379 Bacteria 1671
83 Ga0307411_10003585 3300032005 Bacteria 7238
84 Ga0373956_0000037 3300035119 Bacteria 43249
85 Ga0395900_0033973 3300037418 Bacteria 5249
86 Ga0395898_0044097 3300037466 Bacteria 4393
87 Ga0395901_0003825 3300038443 Bacteria 15171
88 Ga0436365_1383334 3300039437 Bacteria 5794
89 Ga0466972_0018085 3300044658 Bacteria 3526
90 Ga0466965_0066346 3300044683 Bacteria 1809
91 Ga0466966_0011430 3300044684 Bacteria 5889
92 Ga0466966_0082926 3300044684 Bacteria 1995
93 Ga0466961_0010742 3300044693 Bacteria 5849
94 Ga0466961_0115723 3300044693 Bacteria 1685
95 Ga0466963_0023261 3300044694 Bacteria 3932
96 Ga0466963_0130407 3300044694 Bacteria 1736
97 Ga0466964_0007089 3300044706 Bacteria 4192
98 Ga0466964_0028099 3300044706 Bacteria 2214
99 Ga0466971_0013347 3300044719 Bacteria 3607
100 Ga0466971_0050766 3300044719 Bacteria 1866
101 Ga0466970_0029288 3300044765 Bacteria 2898
102 Ga0466970_0048072 3300044765 Bacteria 2274
103 Ga0466957_0003633 3300044842 Bacteria 8501
104 Ga0466957_0135385 3300044842 Bacteria 1583
105 Ga0466960_0041325 3300044901 Bacteria 2184
106 Ga0466958_0020225 3300045836 Bacteria 3881
107 Ga0466967_0003514 3300045976 Bacteria 10245
108 Ga0466967_0006368 3300045976 Bacteria 8342
109 Ga0466967_0006566 3300045976 Bacteria 8253
110 Ga0466967_0008507 3300045976 Bacteria 7530
111 Ga0466967_0050717 3300045976 Bacteria 3634
112 Ga0466967_0348347 3300045976 Bacteria 1433
113 Ga0496100_0129031 3300048903 Bacteria 1778
114 Ga0496101_0153843 3300048904 Bacteria 1760
115 Ga0496102_0024877 3300048905 Bacteria 5325
116 Ga0496102_0079620 3300048905 Bacteria 3017
117 Ga0496104_0007957 3300048907 Bacteria 9398
118 Ga0496105_0002822 3300048908 Bacteria 12703
119 Ga0496106_0014173 3300048909 Bacteria 5888
120 Ga0496107_0036378 3300048910 Bacteria 3531
121 Ga0496108_0084808 3300048911 Bacteria 2689
122 Ga0496109_0054736 3300048912 Bacteria 3639
123 Ga0496109_0081271 3300048912 Bacteria 2986
124 Ga0496111_0006314 3300048914 Bacteria 7687
125 Ga0496111_0108878 3300048914 Bacteria 2040
126 Ga0496114_0029827 3300048917 Bacteria 4484
127 Ga0496115_0012437 3300048918 Bacteria 6406
128 Ga0496126_0000006 3300048929 Bacteria 798804
129 Ga0496126_0000037 3300048929 Bacteria 353425
130 Ga0501069_0003304 3300049585 Bacteria 8275
131 Ga0501069_0102025 3300049585 Bacteria 1629
132 Ga0501070_0012740 3300049586 Bacteria 7089
133 Ga0501074_0087529 3300049590 Bacteria 2231
134 nmdc:mga0yw44_17058_c1 3300050492 Bacteria 3941
135 nmdc:mga0yw44_21769_c1 3300050492 Bacteria 3583
136 nmdc:mga05p37_101209_c1 3300050507 Bacteria 3549
137 nmdc:mga09592_221_c1 3300050508 Bacteria 40980
138 nmdc:mga0qj67_2350_c1 3300050509 Bacteria 13464
139 nmdc:mga06r32_1732_c1 3300050510 Bacteria 19636
140 nmdc:mga08y16_89882_c1 3300050511 Bacteria 3201
141 Ga0495619_0033850 3300053085 Bacteria 3319
142 Ga0587082_012022 3300059504 Bacteria 1278
143 Ga0587082_012041 3300059504 Bacteria 1277
144 Ga0587088_005181 3300059508 Bacteria 1699
145 Ga0587088_010683 3300059508 Bacteria 1350
146 Ga0587090_009021 3300059510 Bacteria 1352
147 Ga0587106_000547 3300059605 Bacteria 2735
148 Ga0587099_003313 3300059622 Bacteria 1332
149 Ga0587128_007079 3300059630 Bacteria 1403
150 Ga0587062_007257 3300059639 Bacteria 1288
151 Ga0587067_005717 3300059640 Bacteria 1699
152 Ga0587072_010483 3300059643 Bacteria 1499
153 Ga0587076_008410 3300059645 Bacteria 1440
154 Ga0587079_007927 3300059647 Bacteria 1605
155 Ga0587114_003428 3300059655 Bacteria 1576
156 Ga0587111_0003823 3300060346 Bacteria 2183
157 Ga0466962_0028580 3300061719 Bacteria 2670
158 Ga0466962_0084906 3300061719 Bacteria 1515
159 2501943299 2501939600 Bacteria 6907073
160 2515496621 2515154088 Bacteria 5526283
161 2515756860 2515154137 Bacteria 5711575
162 2516089398 2515154203 Bacteria 5458536
163 2772644976 2772190715 Bacteria 6959372
164 2855685911 2855683550 Bacteria 7134265
165 2856858781 2856858025 Bacteria 7255264
166 2858868978 2858868258 Bacteria 7683772
167 2858903015 2858902515 Bacteria 7086037
168 2863073645 2863067949 Bacteria 8541735
169 2867321722 2867319477 Bacteria 7069771
170 2899376499 2899370129 Bacteria 6781179
171 2902583672 2902582711 Bacteria 6187705
172 2929225634 2929219909 Bacteria 6984360
173 2974320026 2974315732 Bacteria 4602776
174 2984523893 2984523437 Bacteria 4508481
175 649810691 649633069 Bacteria 6962533
176 8003858277 8003856774 Bacteria 7675274
177 8055414004 8055412473 Bacteria 6257500
178 8056214783 8056207758 Bacteria 8639239
179 Ga0496109_0065553
180 JGI25405J52794_10001491
181 Ga0070658_10199715
182 Ga0070683_100014212
183 Ga0070680_100124407
184 Ga0070682_100006463
185 Ga0068868_100160929
186 Ga0070660_100053313
187 Ga0070692_10015818
188 Ga0070659_100018976
189 Ga0070659_100022286
190 Ga0070714_100109500
191 Ga0070679_100030119
192 Ga0070684_100003260
193 Ga0070684_100133804
194 Ga0070686_100161158
195 Ga0070665_100002233
196 Ga0070665_100130742
197 Ga0068855_100095146
198 Ga0070664_100143494
199 Ga0068857_100007005
200 Ga0068856_100013871
201 Ga0068852_100127404
202 Ga0068864_100043323
203 Ga0068851_10120040
204 Ga0081455_10001896
205 Ga0075365_10021232
206 Ga0097621_100043466
207 Ga0075428_100038312
208 Ga0075430_100003337
209 Ga0075431_100014979
210 Ga0075429_100013107
211 Ga0068865_100021142
212 Ga0111539_10020026
213 Ga0114129_10044079
214 Ga0105242_10022951
215 Ga0105238_10198198
216 Ga0105249_10038100
217 Ga0105249_10255994
218 Ga0105239_10005059
219 Ga0105246_10021714
220 Ga0157370_10111822
221 Ga0157369_10240720
222 Ga0163162_10125481
223 Ga0157372_10130039
224 Ga0157372_10255025
225 Ga0157375_10007170
226 Ga0157375_10056920
227 Ga0163163_10111011
228 Ga0157379_10039817
229 Ga0163161_10146971
230 Ga0197907_10130423
231 Ga0197907_11133954
232 Ga0206354_10764489
233 Ga0206353_11117571
234 Ga0154015_1371766
235 Ga0154015_1701149
236 Ga0213876_10012023
237 Ga0207688_10016491
238 Ga0207647_10009904
239 Ga0207660_10050610
240 Ga0207657_10025450
241 Ga0207649_10159266
242 Ga0207652_10015367
243 Ga0207694_10261824
244 Ga0207690_10010917
245 Ga0207686_10011964
246 Ga0207704_10059475
247 Ga0207689_10121467
248 Ga0207661_10011849
249 Ga0207679_10022869
250 Ga0207667_10087501
251 Ga0207712_10195201
252 Ga0207677_10050203
253 Ga0207703_10013775
254 Ga0207641_10339165
255 Ga0207676_10066976
256 Ga0207674_10006182
257 Ga0207698_10089878
258 Ga0207428_10054662
259 Ga0268266_10083960
260 Ga0268266_10240445
261 Ga0307411_10003585
262 Ga0373956_0000037
263 Ga0395900_0033973
264 Ga0395898_0044097
265 Ga0395901_0003825
266 Ga0436365_1383334
267 Ga0466972_0018085
268 Ga0466965_0066346
269 Ga0466966_0011430
270 Ga0466966_0082926
271 Ga0466961_0010742
272 Ga0466961_0115723
273 Ga0466963_0023261
274 Ga0466963_0130407
275 Ga0466964_0007089
276 Ga0466964_0028099
277 Ga0466971_0013347
278 Ga0466971_0050766
279 Ga0466970_0029288
280 Ga0466970_0048072
281 Ga0466957_0003633
282 Ga0466957_0135385
283 Ga0466960_0041325
284 Ga0466958_0020225
285 Ga0466967_0003514
286 Ga0466967_0006368
287 Ga0466967_0006566
288 Ga0466967_0008507
289 Ga0466967_0050717
290 Ga0466967_0348347
291 Ga0496100_0129031
292 Ga0496101_0153843
293 Ga0496102_0024877
294 Ga0496102_0079620
295 Ga0496104_0007957
296 Ga0496105_0002822
297 Ga0496106_0014173
298 Ga0496107_0036378
299 Ga0496108_0084808
300 Ga0496109_0054736
301 Ga0496109_0081271
302 Ga0496111_0006314
303 Ga0496111_0108878
304 Ga0496114_0029827
305 Ga0496115_0012437
306 Ga0496126_0000006
307 Ga0496126_0000037
308 Ga0501069_0003304
309 Ga0501069_0102025
310 Ga0501070_0012740
311 Ga0501074_0087529
312 nmdc:mga0yw44_17058_c1
313 nmdc:mga0yw44_21769_c1
314 nmdc:mga05p37_101209_c1
315 nmdc:mga09592_221_c1
316 nmdc:mga0qj67_2350_c1
317 nmdc:mga06r32_1732_c1
318 nmdc:mga08y16_89882_c1
319 Ga0495619_0033850
320 Ga0587082_012022
321 Ga0587082_012041
322 Ga0587088_005181
323 Ga0587088_010683
324 Ga0587090_009021
325 Ga0587106_000547
326 Ga0587099_003313
327 Ga0587128_007079
328 Ga0587062_007257
329 Ga0587067_005717
330 Ga0587072_010483
331 Ga0587076_008410
332 Ga0587079_007927
333 Ga0587114_003428
334 Ga0587111_0003823
335 Ga0466962_0028580
336 Ga0466962_0084906
337 2501943299
338 2515496621
339 2515756860
340 2516089398
341 2772644976
342 2855685911
343 2856858781
344 2858868978
345 2858903015
346 2863073645
347 2867321722
348 2899376499
349 2902583672
350 2929225634
351 2974320026
352 2984523893
353 649810691
354 8003858277
355 8055414004
356 8056214783

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

42

304

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
3m9x-assembly1.cif.gz_A open liganded crystal structure of xylose binding protein from escherichia coli 0.9282 42 357
3m9x-assembly1.cif.gz_A open liganded crystal structure of xylose binding protein from escherichia coli 0.9195 42 357
7qsq-assembly2.cif.gz_B permutated n-terminal lobe of the ribose binding protein from thermotoga maritima 0.9153 41 126
7pu4-assembly2.cif.gz_C crystal structure of the dimer rbp-n and rbp-trunc from thermotoga maritima ribose binding protein 0.8827 41 161
5hsg-assembly1.cif.gz_A crystal structure of an abc transporter solute binding protein from klebsiella pneumoniae (kpn_01730, target efi-511059), apo open structure 0.881 44 347
ID Description Score Start End Superfamily
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.945 40 144 3.40.50.2300
4ywhB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9293 42 145 3.40.50.2300
af_P37387_24_127_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9278 40 144 3.40.50.2300
2x7xB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.924 146 268 3.40.50.2300
4ywhB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9188 146 289 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A847H6A3-F1-model_v4 Substrate-binding domain-containing protein 0.9362 108 358 GO:0030246
GO:0030288
AF-A0A827BSU6-F1-model_v4 deleted 0.9354 40 143
AF-A0A0A2W3K5-F1-model_v4 D-xylose-binding periplasmic protein 0.925 174 357 GO:0030246
AF-A0A2J4V088-F1-model_v4 deleted 0.9246 170 357
AF-A0A0A2W3K5-F1-model_v4 D-xylose-binding periplasmic protein 0.9152 174 357 GO:0030246

Map