F272398

General Info

Members Datasets Scaffolds Average Seq Length
178 151 356 467

Family's Representative Sequence

Representative Sequence 3300039438|Ga0436360_0414159|Ga0436360_0414159_4049_5653
Length 534
Sequence MGRVFDQICGGRPSAPFSSSPVFICNRRTGAAIRAAHALAGAATASYILVPETEESAMTEAVALWDLFRQAADPNVVAALKDAVETGPDRALNRINPLAFAAANSLAEEPTIEALVHAARLGLFDMSWNVLCPGCGGVIESGAALKAIDRDQYFCSFCLETHEPTLDQLVEVTFTVNPRVRRIGAHDPNALPYAEYMRQVFWGSGADLPDDFESAIGRATLDVMELSPGEKATMSLSLPPGVVVAFDPVTHTTLFLEVAGEETKERRNLSVVFAEAHSHFGSASLQPGPVRIAFENKSDRRTLPGLWLHGPETDRLSSRRRPFLTATRMLSNQTFRDLYRAGTLDPEQRFKITSLTILFTDLRGSTALYDRVGDLAAYELVRSHFGALTEAVAGEGGAVVKTIGDAVMATFPSPERALRAAMRMREAMRKINAARGGDDLALNIGLHEGPCLAVVLDERQDYFGQTVNVASRVQDLADPTAVLATKPIVESADAARLLSEGGYRTRSRQVALRGVSEAFTLYEVREGETAAAAA

Samples

Sample ID Description Type Environment
1 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
2 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
3 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
4 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
8 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
9 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
10 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
14 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
15 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
27 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
34 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
38 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
39 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
44 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
45 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
46 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
48 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
49 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
51 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
67 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
68 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
69 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
70 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
71 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
72 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
73 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
74 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
75 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
76 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
77 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
78 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
83 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
84 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
90 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
91 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
92 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
97 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
98 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
99 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
100 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
101 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
102 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
103 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
110 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
111 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
112 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
113 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
114 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
115 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
116 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
117 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
118 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
119 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
120 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
121 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
122 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
123 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
124 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
125 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
126 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
127 2643221595 Mesorhizobium sp. Root695 Isolate Unclassified
128 2643221627 Mesorhizobium sp. Root102 Isolate Unclassified
129 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
130 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
131 2738541293 Rhizobium sp. GV031 Isolate Unclassified
132 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
133 2791355199
134 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
135 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
136 2904699407
137 2906610324
138 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
139 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
140 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
141 2922425934
142 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
143 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
144 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
145 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
146 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
147 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
148 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
149 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
150 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
151 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 84.48
Metatranscriptomes 0.57
Isolates 14.94

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.48
Nodule 10.11
Rhizoplane 4.49
Rhizosphere 56.74
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0436360_0414159 3300039438 Bacteria 6149
2 JGI25152J39213_1000944 3300002773 Bacteria 14260
3 JGI25150J39212_1000235 3300002774 Bacteria 30107
4 JGI25151J46595_10000144 3300003187 Bacteria 94653
5 JGI25153J46596_10003385 3300003215 Bacteria 8941
6 Ga0070680_100129433 3300005336 Bacteria 2111
7 Ga0070673_100062399 3300005364 Bacteria 2960
8 Ga0070659_100212521 3300005366 Bacteria 1594
9 Ga0070667_100119623 3300005367 Bacteria 2290
10 Ga0070709_10000760 3300005434 Bacteria 18193
11 Ga0070714_100105094 3300005435 Bacteria 2492
12 Ga0070714_100130852 3300005435 Bacteria 2242
13 Ga0070713_100043567 3300005436 Bacteria 3669
14 Ga0070710_10003286 3300005437 Bacteria 7665
15 Ga0070710_10026315 3300005437 Bacteria 3089
16 Ga0070711_100000745 3300005439 Bacteria 16987
17 Ga0070711_100027838 3300005439 Bacteria 3714
18 Ga0070663_100011469 3300005455 Bacteria 5566
19 Ga0070663_100089626 3300005455 Bacteria 2277
20 Ga0070681_10080166 3300005458 Bacteria 3220
21 Ga0070706_100131456 3300005467 Bacteria 2336
22 Ga0070706_100133322 3300005467 Bacteria 2318
23 Ga0070698_100137372 3300005471 Bacteria 2398
24 Ga0070684_100183954 3300005535 Bacteria 1900
25 Ga0070697_100186005 3300005536 Bacteria 1761
26 Ga0068856_100110805 3300005614 Bacteria 2742
27 Ga0068852_100255124 3300005616 Bacteria 1682
28 Ga0068859_100114146 3300005617 Bacteria 2765
29 Ga0068858_100013306 3300005842 Bacteria 7759
30 Ga0070717_10047931 3300006028 Bacteria 3503
31 Ga0070717_10063657 3300006028 Bacteria 3062
32 Ga0075365_10006244 3300006038 Bacteria 6534
33 Ga0070716_100008382 3300006173 Bacteria 5128
34 Ga0068871_100072790 3300006358 Bacteria 2831
35 Ga0075430_100163845 3300006846 Bacteria 1850
36 Ga0075431_100004726 3300006847 Bacteria 13383
37 Ga0075431_100187863 3300006847 Bacteria 2118
38 Ga0097620_100114145 3300006931 Bacteria 2765
39 Ga0105240_10065953 3300009093 Bacteria 4493
40 Ga0105247_10022916 3300009101 Bacteria 3760
41 Ga0105247_10042201 3300009101 Bacteria 2793
42 Ga0114129_10169480 3300009147 Bacteria 2977
43 Ga0114129_10274632 3300009147 Bacteria 2254
44 Ga0105242_10076317 3300009176 Bacteria 2793
45 Ga0105248_10164009 3300009177 Bacteria 2506
46 Ga0105239_10043934 3300010375 Bacteria 4900
47 Ga0157374_10188923 3300013296 Bacteria 2015
48 Ga0157378_10096979 3300013297 Bacteria 2687
49 Ga0157375_10048740 3300013308 Bacteria 4146
50 Ga0157379_10072919 3300014968 Bacteria 3073
51 Ga0157376_10061904 3300014969 Bacteria 3147
52 Ga0213873_10009581 3300021358 Bacteria 2016
53 Ga0213876_10032614 3300021384 Bacteria 2746
54 Ga0213871_10021100 3300021441 Bacteria 1621
55 Ga0224712_10037310 3300022467 Bacteria 1807
56 Ga0207425_1000086 3300025245 Bacteria 94681
57 Ga0209677_100416 3300025253 Bacteria 25364
58 Ga0209148_1002814 3300025254 Bacteria 5402
59 Ga0209129_1000174 3300025258 Bacteria 94671
60 Ga0209455_1002223 3300025272 Bacteria 7649
61 Ga0209455_1004820 3300025272 Bacteria 4311
62 Ga0209025_1000367 3300025294 Bacteria 95238
63 Ga0209758_1000305 3300025297 Bacteria 95644
64 Ga0209758_1007314 3300025297 Bacteria 7566
65 Ga0209758_1021250 3300025297 Bacteria 3033
66 Ga0207692_10008902 3300025898 Bacteria 4172
67 Ga0207692_10015075 3300025898 Bacteria 3392
68 Ga0207710_10046014 3300025900 Bacteria 1947
69 Ga0207647_10113985 3300025904 Bacteria 1597
70 Ga0207699_10000309 3300025906 Bacteria 26099
71 Ga0207684_10054106 3300025910 Bacteria 3405
72 Ga0207684_10202005 3300025910 Bacteria 1714
73 Ga0207707_10080156 3300025912 Bacteria 2850
74 Ga0207693_10038257 3300025915 Bacteria 3778
75 Ga0207663_10027063 3300025916 Bacteria 3337
76 Ga0207663_10143285 3300025916 Bacteria 1667
77 Ga0207686_10060938 3300025934 Bacteria 2390
78 Ga0207658_10031379 3300025986 Bacteria 3772
79 Ga0207703_10054197 3300026035 Bacteria 3261
80 Ga0207678_10076507 3300026067 Bacteria 2867
81 Ga0265330_10007813 3300031235 Bacteria 5189
82 Ga0265329_10030431 3300031242 Bacteria 1759
83 Ga0307508_10000108 3300031616 Bacteria 97443
84 Ga0265342_10007824 3300031712 Bacteria 7765
85 Ga0307412_10000696 3300031911 Bacteria 19413
86 Ga0315911_1000008 3300033442 Bacteria 381285
87 Ga0373926_0007331 3300035083 Bacteria 3675
88 Ga0373944_0005407 3300035089 Bacteria 3364
89 Ga0373923_0013882 3300035111 Bacteria 3013
90 Ga0373946_0016967 3300035171 Bacteria 2780
91 Ga0373947_0007571 3300035725 Bacteria 6282
92 Ga0373925_0045847 3300037068 Bacteria 3248
93 Ga0436365_0168484 3300039437 Bacteria 6646
94 Ga0436365_0656430 3300039437 Bacteria 1607
95 Ga0436365_0886276 3300039437 Bacteria 10821
96 Ga0436365_1785647 3300039437 Bacteria 3087
97 Ga0436360_0784873 3300039438 Bacteria 2238
98 Ga0436361_0349765 3300039447 Bacteria 1925
99 Ga0436361_0542087 3300039447 Bacteria 1715
100 Ga0436362_0518754 3300039453 Bacteria 11093
101 Ga0466966_0006814 3300044684 Bacteria 7569
102 Ga0466961_0088563 3300044693 Bacteria 1956
103 Ga0466963_0137651 3300044694 Bacteria 1690
104 Ga0466959_0064854 3300045049 Bacteria 2651
105 Ga0466967_0012883 3300045976 Bacteria 6428
106 Ga0495580_0030938 3300046472 Bacteria 3871
107 Ga0495640_0018373 3300046533 Bacteria 5189
108 Ga0495634_0023644 3300046642 Bacteria 4317
109 Ga0495625_0085416 3300046660 Bacteria 2190
110 Ga0495624_0031998 3300046690 Bacteria 3413
111 Ga0495686_0013507 3300047472 Bacteria 5663
112 Ga0496101_0004871 3300048904 Bacteria 8517
113 Ga0496102_0098191 3300048905 Bacteria 2717
114 Ga0496103_0058516 3300048906 Bacteria 2394
115 Ga0496104_0006432 3300048907 Bacteria 10326
116 Ga0496104_0052186 3300048907 Bacteria 3862
117 Ga0496107_0190721 3300048910 Bacteria 1523
118 Ga0496114_0058367 3300048917 Bacteria 3222
119 Ga0496119_0038481 3300048922 Bacteria 3090
120 Ga0496121_0093070 3300048924 Bacteria 2348
121 Ga0496121_0098457 3300048924 Bacteria 2263
122 Ga0496125_0011220 3300048928 Bacteria 8981
123 Ga0496125_0094850 3300048928 Bacteria 2221
124 Ga0496126_0015217 3300048929 Bacteria 7746
125 Ga0496126_0020263 3300048929 Bacteria 6527
126 Ga0496126_0034681 3300048929 Bacteria 4736
127 Ga0496126_0196026 3300048929 Bacteria 1708
128 Ga0501036_0141382 3300049572 Bacteria 2031
129 Ga0501038_0097209 3300049574 Bacteria 2457
130 Ga0501040_0100946 3300049576 Bacteria 2013
131 Ga0501043_0196990 3300049579 Bacteria 1565
132 Ga0501046_0059039 3300049580 Bacteria 3006
133 Ga0501067_0044688 3300049583 Bacteria 2461
134 Ga0501044_0011504 3300049823 Bacteria 9586
135 nmdc:mga05p37_100791_c1 3300050507 Bacteria 3557
136 nmdc:mga05p37_143442_c1 3300050507 Bacteria 2925
137 nmdc:mga06r32_36889_c1 3300050510 Bacteria 4623
138 Ga0500572_000099 3300053111 Bacteria 28590
139 Ga0500595_001229 3300053119 Bacteria 14141
140 Ga0500559_0000238 3300053136 Bacteria 43775
141 Ga0500586_000394 3300053145 Bacteria 8730
142 Ga0500620_000099 3300053155 Bacteria 17122
143 Ga0500627_0101974 3300053158 Bacteria 1288
144 Ga0500639_044168 3300053163 Bacteria 2334
145 Ga0500636_0096634 3300053177 Bacteria 1685
146 Ga0500611_000394 3300053727 Bacteria 4451
147 Ga0501082_0046134 3300060353 Bacteria 3757
148 Ga0466962_0028607 3300061719 Bacteria 2669
149 2513660802 2513237096 Bacteria 8722461
150 2513863328 2513237137 Bacteria 9558895
151 2513922576 2513237145 Bacteria 8979722
152 2517888926 2517572143 Bacteria 9484767
153 2524537360 2524023228 Bacteria 10118060
154 2643987842 2643221595 Bacteria 6565519
155 2644154214 2643221627 Bacteria 6761570
156 2671122531 2667528175 Bacteria 7532676
157 2723841709 2721755755 Bacteria 8322773
158 2738803123 2738541293 Bacteria 7065685
159 2793073600 2791355197 Bacteria 8420563
160 2793080856
161 2885383193 2885374607 Bacteria 8927485
162 2903749132 2903748898 Bacteria 9972761
163 2904708546
164 2906613977
165 2906641364 2906635258 Bacteria 8601019
166 2906668757 2906660503 Bacteria 8595048
167 2908747531 2908739725 Bacteria 8628932
168 2922434135
169 2935637056 2935630451 Bacteria 8169952
170 2941513677 2941507105 Bacteria 8166816
171 2941521640 2941515067 Bacteria 8166720
172 2941529411 2941523033 Bacteria 8169134
173 2996316180 2996310559 Bacteria 6357320
174 3005475154 3005474847 Bacteria 9259049
175 8006936128 8006933436 Bacteria 10410654
176 8006976054 8006973647 Bacteria 10679141
177 8019562524 8019555841 Bacteria 9642137
178 8019572598 8019565922 Bacteria 9639779
179 Ga0436360_0414159
180 JGI25152J39213_1000944
181 JGI25150J39212_1000235
182 JGI25151J46595_10000144
183 JGI25153J46596_10003385
184 Ga0070680_100129433
185 Ga0070673_100062399
186 Ga0070659_100212521
187 Ga0070667_100119623
188 Ga0070709_10000760
189 Ga0070714_100105094
190 Ga0070714_100130852
191 Ga0070713_100043567
192 Ga0070710_10003286
193 Ga0070710_10026315
194 Ga0070711_100000745
195 Ga0070711_100027838
196 Ga0070663_100011469
197 Ga0070663_100089626
198 Ga0070681_10080166
199 Ga0070706_100131456
200 Ga0070706_100133322
201 Ga0070698_100137372
202 Ga0070684_100183954
203 Ga0070697_100186005
204 Ga0068856_100110805
205 Ga0068852_100255124
206 Ga0068859_100114146
207 Ga0068858_100013306
208 Ga0070717_10047931
209 Ga0070717_10063657
210 Ga0075365_10006244
211 Ga0070716_100008382
212 Ga0068871_100072790
213 Ga0075430_100163845
214 Ga0075431_100004726
215 Ga0075431_100187863
216 Ga0097620_100114145
217 Ga0105240_10065953
218 Ga0105247_10022916
219 Ga0105247_10042201
220 Ga0114129_10169480
221 Ga0114129_10274632
222 Ga0105242_10076317
223 Ga0105248_10164009
224 Ga0105239_10043934
225 Ga0157374_10188923
226 Ga0157378_10096979
227 Ga0157375_10048740
228 Ga0157379_10072919
229 Ga0157376_10061904
230 Ga0213873_10009581
231 Ga0213876_10032614
232 Ga0213871_10021100
233 Ga0224712_10037310
234 Ga0207425_1000086
235 Ga0209677_100416
236 Ga0209148_1002814
237 Ga0209129_1000174
238 Ga0209455_1002223
239 Ga0209455_1004820
240 Ga0209025_1000367
241 Ga0209758_1000305
242 Ga0209758_1007314
243 Ga0209758_1021250
244 Ga0207692_10008902
245 Ga0207692_10015075
246 Ga0207710_10046014
247 Ga0207647_10113985
248 Ga0207699_10000309
249 Ga0207684_10054106
250 Ga0207684_10202005
251 Ga0207707_10080156
252 Ga0207693_10038257
253 Ga0207663_10027063
254 Ga0207663_10143285
255 Ga0207686_10060938
256 Ga0207658_10031379
257 Ga0207703_10054197
258 Ga0207678_10076507
259 Ga0265330_10007813
260 Ga0265329_10030431
261 Ga0307508_10000108
262 Ga0265342_10007824
263 Ga0307412_10000696
264 Ga0315911_1000008
265 Ga0373926_0007331
266 Ga0373944_0005407
267 Ga0373923_0013882
268 Ga0373946_0016967
269 Ga0373947_0007571
270 Ga0373925_0045847
271 Ga0436365_0168484
272 Ga0436365_0656430
273 Ga0436365_0886276
274 Ga0436365_1785647
275 Ga0436360_0784873
276 Ga0436361_0349765
277 Ga0436361_0542087
278 Ga0436362_0518754
279 Ga0466966_0006814
280 Ga0466961_0088563
281 Ga0466963_0137651
282 Ga0466959_0064854
283 Ga0466967_0012883
284 Ga0495580_0030938
285 Ga0495640_0018373
286 Ga0495634_0023644
287 Ga0495625_0085416
288 Ga0495624_0031998
289 Ga0495686_0013507
290 Ga0496101_0004871
291 Ga0496102_0098191
292 Ga0496103_0058516
293 Ga0496104_0006432
294 Ga0496104_0052186
295 Ga0496107_0190721
296 Ga0496114_0058367
297 Ga0496119_0038481
298 Ga0496121_0093070
299 Ga0496121_0098457
300 Ga0496125_0011220
301 Ga0496125_0094850
302 Ga0496126_0015217
303 Ga0496126_0020263
304 Ga0496126_0034681
305 Ga0496126_0196026
306 Ga0501036_0141382
307 Ga0501038_0097209
308 Ga0501040_0100946
309 Ga0501043_0196990
310 Ga0501046_0059039
311 Ga0501067_0044688
312 Ga0501044_0011504
313 nmdc:mga05p37_100791_c1
314 nmdc:mga05p37_143442_c1
315 nmdc:mga06r32_36889_c1
316 Ga0500572_000099
317 Ga0500595_001229
318 Ga0500559_0000238
319 Ga0500586_000394
320 Ga0500620_000099
321 Ga0500627_0101974
322 Ga0500639_044168
323 Ga0500636_0096634
324 Ga0500611_000394
325 Ga0501082_0046134
326 Ga0466962_0028607
327 2513660802
328 2513863328
329 2513922576
330 2517888926
331 2524537360
332 2643987842
333 2644154214
334 2671122531
335 2723841709
336 2738803123
337 2793073600
338 2793080856
339 2885383193
340 2903749132
341 2904708546
342 2906613977
343 2906641364
344 2906668757
345 2908747531
346 2922434135
347 2935637056
348 2941513677
349 2941521640
350 2941529411
351 2996316180
352 3005475154
353 8006936128
354 8006976054
355 8019562524
356 8019572598

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF19363

DUF5939

Family of unknown function (DUF5939)

58

337

0.99

PF00211

Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

348

524

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wp8-assembly1.cif.gz_A crystal structure of adenylyl cyclase ma1120 from mycobacterium avium in complex with 2'5'-dd-3'-atp and manganese ion 0.8881 296 468
5d0g-assembly1.cif.gz_A crystal structure of triple mutant (kda to egy) of adenylyl cyclase ma1120 from mycobacterium avium in complex with gtp and calcium ion 0.8875 296 468
4wpa-assembly1.cif.gz_B crystal structure of adenylyl cyclase ma1120 from mycobacterium avium bound to pyrophosphate and calcium 0.8823 296 468
5d0e-assembly1.cif.gz_A crystal structure of an adenylyl cyclase ma1120-cat in complex with gtp and calcium from mycobacterium avium 0.8804 296 468
5d0h-assembly1.cif.gz_B crystal structure of triple mutant (kda to egy) of an adenylyl cyclase ma1120 from mycobacterium avium in complex with atp and calcium ion 0.878 296 468
ID Description Score Start End Superfamily
4hamA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9061 36 67 1.10.10.10
1ybuC00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Nucleotide cyclase, GGDEF domain 0.874 291 468 3.30.70.1230
5d0eB00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Nucleotide cyclase, GGDEF domain 0.8708 296 468 3.30.70.1230
af_P9WMU7_185_364_3.30.70.1230 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Nucleotide cyclase, GGDEF domain 0.8613 294 468 3.30.70.1230
af_Q55F68_1579_1775_3.30.70.1230 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Nucleotide cyclase, GGDEF domain 0.8581 297 467 3.30.70.1230
ID Description Score Start End GO Terms
AF-A0A1I7LJG1-F1-model_v4 Adenylate cyclase, class 3 0.9782 1 468 GO:0004016
GO:0006171
GO:0035556
AF-A0A1I7LJG1-F1-model_v4 Adenylate cyclase, class 3 0.9762 1 468 GO:0004016
GO:0006171
GO:0035556
AF-A0A537R0C8-F1-model_v4 Adenylate/guanylate cyclase domain-containing protein 0.9711 1 322
AF-A0A537R0C8-F1-model_v4 Adenylate/guanylate cyclase domain-containing protein 0.9652 1 322
AF-A0A537MKW5-F1-model_v4 Adenylate/guanylate cyclase domain-containing protein 0.951 291 468 GO:0004016
GO:0006171
GO:0035556

Map