F272192

General Info

Members Datasets Scaffolds Average Seq Length
178 140 356 241

Family's Representative Sequence

Representative Sequence 3300026121|Ga0207683_10355908|Ga0207683_103559082
Length 254
Sequence MDKPLLDRLAVVTGASRGIGRAAALAFXXXXAHVIALARTQGALEELDDEIRAAGSSATLVPLDLKDYDALDRLGATIHERWGKLDILLGNAGLLGEIAPLAHVDQPVWDAVMAVNVTANWRLIRSLDPLLRKSDAGRAIFLTSGAAHRCLAYWGPYSVSKAALEALVRTYAAETATTPVRLMLVNPGPLRTRMRAAAMPGEDPQTLRTPEELAPHFVRLASPQWSETGKIYDFPQDKVLAPRGPAVSRAELLE

Samples

Sample ID Description Type Environment
1 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
10 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
15 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
16 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
21 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
22 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
23 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
24 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
25 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
26 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
27 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
28 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
29 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
30 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
31 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
32 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
33 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
35 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
46 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
47 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
48 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
49 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
50 3300034819 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 Metagenome Rhizosphere
51 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
52 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
53 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
54 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
55 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
56 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
57 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
58 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
59 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
60 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
61 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
62 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
63 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
64 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
65 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
66 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
67 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
68 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
69 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
70 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
71 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
72 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
73 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
74 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
75 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
76 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
77 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
91 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
92 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
93 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
94 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
95 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
96 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
97 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
98 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
99 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
100 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
103 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
104 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
107 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
108 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
109 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
110 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
111 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
112 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
113 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
114 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
115 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
116 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
117 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
118 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
119 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
120 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
121 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
122 2643221640 Caulobacter sp. Root342 Isolate Unclassified
123 2643221642 Caulobacter sp. Root343 Isolate Unclassified
124 2643221734 Bosea sp. Root670 Isolate Unclassified
125 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
126 2841760612 Bosea sp. Tri-49 Isolate Nodule
127 2842694124 Methylopila sp. R-72369 Isolate Unclassified
128 2844104063 Bosea sp. Tri-39 Isolate Nodule
129 2851182111 Bosea sp. Tri-44 Isolate Nodule
130 2851246043 Bosea sp. Tri-54 Isolate Nodule
131 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
132 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
133 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
134 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
135 2891088606 Methylosinus sp. 3S-1 Isolate Rhizosphere
136 2902330777 Methylobacterium sp. 2A Isolate Unclassified
137 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
138 2917699015 Bosea sp. F3-2 Isolate Rhizosphere
139 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
140 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 88.76
Metatranscriptomes 0
Isolates 11.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.54
Nodule 2.81
Rhizoplane 1.12
Rhizosphere 65.73
Stem 0
Stem Tuber 0
Unclassified 1.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207683_10355908 3300026121 Bacteria 1344
2 JGI25165J46597_1000046 3300003214 Bacteria 255996
3 Ga0055536_1001970 3300003781 Bacteria 11802
4 Ga0055536_1002062 3300003781 Bacteria 11472
5 Ga0055530_10004192 3300003791 Bacteria 7597
6 Ga0055530_10006060 3300003791 Bacteria 5524
7 Ga0055531_10001332 3300003794 Bacteria 18436
8 Ga0065165_1000072 3300005262 Bacteria 165049
9 Ga0070661_100095832 3300005344 Bacteria 2201
10 Ga0070694_100447144 3300005444 Bacteria 1020
11 Ga0070697_100496927 3300005536 Bacteria 1066
12 Ga0070697_100693644 3300005536 Bacteria 898
13 Ga0070672_100212708 3300005543 Bacteria 1620
14 Ga0070665_100125178 3300005548 Bacteria 2572
15 Ga0068857_100109288 3300005577 Bacteria 2484
16 Ga0081455_10000179 3300005937 Bacteria 79869
17 Ga0081540_1017547 3300005983 Bacteria 4427
18 Ga0075369_10091218 3300006186 Bacteria 1360
19 Ga0075366_10017900 3300006195 Bacteria 4087
20 Ga0075431_100626223 3300006847 Bacteria 1058
21 Ga0075433_10214807 3300006852 Bacteria 1709
22 Ga0075434_100602483 3300006871 Bacteria 1118
23 Ga0105242_10426154 3300009176 Bacteria 1244
24 Ga0171462_1037 3300013250 Bacteria 78452
25 Ga0157372_10029004 3300013307 Bacteria 6037
26 Ga0157379_10001695 3300014968 Bacteria 18218
27 Ga0213876_10293820 3300021384 Bacteria 864
28 Ga0213875_10000007 3300021388 Bacteria 562717
29 Ga0213871_10080795 3300021441 Bacteria 931
30 Ga0207427_104869 3300025231 Bacteria 2074
31 Ga0209233_1000013 3300025261 Bacteria 1013785
32 Ga0209130_1000125 3300025284 Bacteria 124425
33 Ga0209676_1000336 3300025292 Bacteria 89848
34 Ga0209676_1001809 3300025292 Bacteria 17881
35 Ga0209025_1001183 3300025294 Bacteria 36933
36 Ga0209564_1000105 3300025295 Bacteria 218124
37 Ga0209050_1002138 3300025298 Bacteria 17990
38 Ga0209050_1002312 3300025298 Bacteria 16767
39 Ga0209256_1001169 3300025299 Bacteria 29578
40 Ga0209051_1003241 3300025303 Bacteria 10816
41 Ga0209257_1000142 3300025304 Bacteria 200756
42 Ga0209257_1004347 3300025304 Bacteria 11058
43 Ga0207649_10070327 3300025920 Bacteria 2232
44 Ga0207690_10158783 3300025932 Bacteria 1683
45 Ga0207706_10315521 3300025933 Bacteria 1361
46 Ga0207668_10189766 3300025972 Bacteria 1628
47 Ga0207674_10123670 3300026116 Bacteria 2553
48 Ga0207683_10045231 3300026121 Bacteria 3849
49 Ga0207698_10012702 3300026142 Bacteria 5524
50 Ga0307515_10130931 3300028794 Bacteria 2764
51 Ga0265338_10036400 3300028800 Bacteria 4711
52 Ga0265328_10001043 3300031239 Bacteria 12756
53 Ga0265340_10000868 3300031247 Bacteria 17119
54 Ga0265327_10000220 3300031251 Bacteria 115886
55 Ga0265316_10005363 3300031344 Bacteria 12479
56 Ga0307516_10148288 3300031730 Bacteria 2109
57 Ga0307516_10245533 3300031730 Bacteria 1487
58 Ga0373958_0006700 3300034819 Bacteria 1806
59 Ga0373940_0041153 3300035088 Bacteria 1270
60 Ga0373941_0004162 3300035115 Bacteria 3322
61 Ga0373962_0004648 3300035242 Bacteria 3315
62 Ga0373931_0002268 3300035691 Bacteria 8503
63 Ga0373947_0192290 3300035725 Bacteria 1332
64 Ga0436364_0955256 3300037853 Bacteria 35556
65 Ga0400488_57596 3300038741 Unclassified 1493
66 Ga0400486_01257 3300038742 Unclassified 1351
67 Ga0400483_123133 3300039062 Bacteria 1843
68 Ga0436360_1061175 3300039438 Bacteria 1088
69 Ga0436361_0154688 3300039447 Bacteria 1385
70 Ga0451833_1202869 3300041491 Bacteria 1055
71 Ga0439435_0031216 3300042436 Bacteria 1447
72 Ga0466968_0111727 3300044735 Bacteria 1229
73 Ga0495629_0496554 3300046459 Bacteria 823
74 Ga0495582_0268787 3300046473 Bacteria 978
75 Ga0495656_0036325 3300046615 Bacteria 2029
76 Ga0495668_0000014 3300046616 Bacteria 442055
77 Ga0495668_0031518 3300046616 Bacteria 2987
78 Ga0495625_0107494 3300046660 Bacteria 1909
79 Ga0495669_0000001 3300046684 Bacteria 291866
80 Ga0495686_0012828 3300047472 Bacteria 5846
81 Ga0495686_0121533 3300047472 Bacteria 1556
82 Ga0496113_0126547 3300048916 Bacteria 2002
83 Ga0496114_0063770 3300048917 Bacteria 3085
84 Ga0496124_0010196 3300048927 Bacteria 9555
85 Ga0496124_0271945 3300048927 Bacteria 1240
86 Ga0496125_0041033 3300048928 Bacteria 3961
87 Ga0496126_0001300 3300048929 Bacteria 39781
88 Ga0501032_0004890 3300049569 Bacteria 10028
89 Ga0501033_0121472 3300049570 Bacteria 1896
90 Ga0501034_0008881 3300049571 Bacteria 10566
91 Ga0501034_0068651 3300049571 Bacteria 3555
92 Ga0501034_0160297 3300049571 Bacteria 2221
93 Ga0501036_0002345 3300049572 Bacteria 14799
94 Ga0501036_0170775 3300049572 Bacteria 1832
95 Ga0501037_0010980 3300049573 Bacteria 6659
96 Ga0501037_0062496 3300049573 Bacteria 2715
97 Ga0501038_0007257 3300049574 Bacteria 10232
98 Ga0501038_0137627 3300049574 Bacteria 2000
99 Ga0501038_0557625 3300049574 Bacteria 871
100 Ga0501039_0003435 3300049575 Bacteria 11827
101 Ga0501039_0259596 3300049575 Bacteria 1366
102 Ga0501041_0370507 3300049577 Bacteria 906
103 Ga0501042_0005137 3300049578 Bacteria 8401
104 Ga0501042_0061987 3300049578 Bacteria 2671
105 Ga0501043_0003381 3300049579 Bacteria 13137
106 Ga0501043_0058611 3300049579 Bacteria 3023
107 Ga0501043_0108210 3300049579 Bacteria 2184
108 Ga0501046_0011279 3300049580 Bacteria 7648
109 Ga0501046_0054338 3300049580 Bacteria 3151
110 Ga0501046_0215331 3300049580 Bacteria 1424
111 Ga0501047_0016645 3300049581 Bacteria 7020
112 Ga0501047_0093209 3300049581 Bacteria 2891
113 Ga0501048_0032785 3300049582 Bacteria 3753
114 Ga0501048_0303802 3300049582 Bacteria 1135
115 Ga0501067_0002277 3300049583 Bacteria 10595
116 Ga0501068_0040477 3300049584 Bacteria 2798
117 Ga0501069_0003133 3300049585 Bacteria 8475
118 Ga0501070_0006591 3300049586 Bacteria 9883
119 Ga0501072_0015623 3300049588 Bacteria 5819
120 Ga0501073_0008412 3300049589 Bacteria 7652
121 Ga0501074_0004323 3300049590 Bacteria 10145
122 Ga0501075_0094636 3300049591 Bacteria 2267
123 Ga0501076_0105537 3300049592 Bacteria 2274
124 Ga0501076_0129846 3300049592 Bacteria 2043
125 Ga0501077_0026352 3300049593 Bacteria 3689
126 Ga0501079_0002074 3300049741 Bacteria 14370
127 Ga0501079_0014961 3300049741 Bacteria 5915
128 Ga0501079_0135380 3300049741 Bacteria 1918
129 Ga0501079_0194249 3300049741 Bacteria 1584
130 Ga0501080_0014248 3300049742 Bacteria 7320
131 Ga0501081_0393263 3300049743 Bacteria 1026
132 Ga0501083_0001873 3300049744 Bacteria 14449
133 Ga0501083_0154503 3300049744 Bacteria 1502
134 Ga0501035_0011597 3300049822 Bacteria 8170
135 Ga0501044_0031775 3300049823 Bacteria 5552
136 Ga0501044_0458928 3300049823 Bacteria 1180
137 Ga0501045_0133027 3300049824 Bacteria 1849
138 nmdc:mga0yw44_365303_c1 3300050492 Bacteria 973
139 nmdc:mga0k408_371677_c1 3300050493 Bacteria 852
140 nmdc:mga08x19_86659_c1 3300050514 Bacteria 2062
141 nmdc:mga0sz30_138814_c1 3300050516 Bacteria 1073
142 nmdc:mga0sz30_23514_c1 3300050516 Bacteria 2508
143 Ga0495619_0201426 3300053085 Bacteria 1378
144 Ga0500595_000075 3300053119 Bacteria 69432
145 Ga0500608_000026 3300053122 Bacteria 68633
146 Ga0500559_0003510 3300053136 Bacteria 7682
147 Ga0500616_0000501 3300053153 Bacteria 50041
148 Ga0500622_0007306 3300053156 Bacteria 6291
149 Ga0500622_0012332 3300053156 Bacteria 4628
150 Ga0500639_028089 3300053163 Bacteria 2973
151 Ga0501084_0012423 3300054114 Bacteria 7057
152 Ga0501082_0009284 3300060353 Bacteria 8477
153 Ga0501082_0154428 3300060353 Bacteria 1994
154 Ga0501082_0378004 3300060353 Bacteria 1236
155 Ga0501082_0460850 3300060353 Bacteria 1111
156 Ga0501082_0492123 3300060353 Bacteria 1072
157 Ga0530510_0018029 3300061734 Bacteria 5004
158 Ga0530510_0369421 3300061734 Bacteria 1079
159 2587916229 2585428106 Bacteria 5179711
160 2644226265 2643221640 Bacteria 5258820
161 2644235753 2643221642 Bacteria 5357871
162 2644735944 2643221734 Bacteria 5365412
163 2829748231 2829745981 Bacteria 5406054
164 2841762073 2841760612 Bacteria 6454112
165 2842694480 2842694124 Bacteria 4063419
166 2844105098 2844104063 Bacteria 6440972
167 2851183422 2851182111 Bacteria 6047226
168 2851248086 2851246043 Bacteria 6439203
169 2857506470 2857504554 Bacteria 5369913
170 2883357968 2883354860 Bacteria 5865246
171 2884300234 2884298095 Bacteria 3823049
172 2884964348 2884960567 Bacteria 5437054
173 2891090010 2891088606 Bacteria 4762464
174 2902333852 2902330777 Bacteria 6395352
175 2902405664 2902405164 Bacteria 6784948
176 2917699443 2917699015 Bacteria 7043791
177 2928533629 2928531327 Bacteria 5101314
178 8057529764 8057529695 Bacteria 6306553
179 Ga0207683_10355908
180 JGI25165J46597_1000046
181 Ga0055536_1001970
182 Ga0055536_1002062
183 Ga0055530_10004192
184 Ga0055530_10006060
185 Ga0055531_10001332
186 Ga0065165_1000072
187 Ga0070661_100095832
188 Ga0070694_100447144
189 Ga0070697_100496927
190 Ga0070697_100693644
191 Ga0070672_100212708
192 Ga0070665_100125178
193 Ga0068857_100109288
194 Ga0081455_10000179
195 Ga0081540_1017547
196 Ga0075369_10091218
197 Ga0075366_10017900
198 Ga0075431_100626223
199 Ga0075433_10214807
200 Ga0075434_100602483
201 Ga0105242_10426154
202 Ga0171462_1037
203 Ga0157372_10029004
204 Ga0157379_10001695
205 Ga0213876_10293820
206 Ga0213875_10000007
207 Ga0213871_10080795
208 Ga0207427_104869
209 Ga0209233_1000013
210 Ga0209130_1000125
211 Ga0209676_1000336
212 Ga0209676_1001809
213 Ga0209025_1001183
214 Ga0209564_1000105
215 Ga0209050_1002138
216 Ga0209050_1002312
217 Ga0209256_1001169
218 Ga0209051_1003241
219 Ga0209257_1000142
220 Ga0209257_1004347
221 Ga0207649_10070327
222 Ga0207690_10158783
223 Ga0207706_10315521
224 Ga0207668_10189766
225 Ga0207674_10123670
226 Ga0207683_10045231
227 Ga0207698_10012702
228 Ga0307515_10130931
229 Ga0265338_10036400
230 Ga0265328_10001043
231 Ga0265340_10000868
232 Ga0265327_10000220
233 Ga0265316_10005363
234 Ga0307516_10148288
235 Ga0307516_10245533
236 Ga0373958_0006700
237 Ga0373940_0041153
238 Ga0373941_0004162
239 Ga0373962_0004648
240 Ga0373931_0002268
241 Ga0373947_0192290
242 Ga0436364_0955256
243 Ga0400488_57596
244 Ga0400486_01257
245 Ga0400483_123133
246 Ga0436360_1061175
247 Ga0436361_0154688
248 Ga0451833_1202869
249 Ga0439435_0031216
250 Ga0466968_0111727
251 Ga0495629_0496554
252 Ga0495582_0268787
253 Ga0495656_0036325
254 Ga0495668_0000014
255 Ga0495668_0031518
256 Ga0495625_0107494
257 Ga0495669_0000001
258 Ga0495686_0012828
259 Ga0495686_0121533
260 Ga0496113_0126547
261 Ga0496114_0063770
262 Ga0496124_0010196
263 Ga0496124_0271945
264 Ga0496125_0041033
265 Ga0496126_0001300
266 Ga0501032_0004890
267 Ga0501033_0121472
268 Ga0501034_0008881
269 Ga0501034_0068651
270 Ga0501034_0160297
271 Ga0501036_0002345
272 Ga0501036_0170775
273 Ga0501037_0010980
274 Ga0501037_0062496
275 Ga0501038_0007257
276 Ga0501038_0137627
277 Ga0501038_0557625
278 Ga0501039_0003435
279 Ga0501039_0259596
280 Ga0501041_0370507
281 Ga0501042_0005137
282 Ga0501042_0061987
283 Ga0501043_0003381
284 Ga0501043_0058611
285 Ga0501043_0108210
286 Ga0501046_0011279
287 Ga0501046_0054338
288 Ga0501046_0215331
289 Ga0501047_0016645
290 Ga0501047_0093209
291 Ga0501048_0032785
292 Ga0501048_0303802
293 Ga0501067_0002277
294 Ga0501068_0040477
295 Ga0501069_0003133
296 Ga0501070_0006591
297 Ga0501072_0015623
298 Ga0501073_0008412
299 Ga0501074_0004323
300 Ga0501075_0094636
301 Ga0501076_0105537
302 Ga0501076_0129846
303 Ga0501077_0026352
304 Ga0501079_0002074
305 Ga0501079_0014961
306 Ga0501079_0135380
307 Ga0501079_0194249
308 Ga0501080_0014248
309 Ga0501081_0393263
310 Ga0501083_0001873
311 Ga0501083_0154503
312 Ga0501035_0011597
313 Ga0501044_0031775
314 Ga0501044_0458928
315 Ga0501045_0133027
316 nmdc:mga0yw44_365303_c1
317 nmdc:mga0k408_371677_c1
318 nmdc:mga08x19_86659_c1
319 nmdc:mga0sz30_138814_c1
320 nmdc:mga0sz30_23514_c1
321 Ga0495619_0201426
322 Ga0500595_000075
323 Ga0500608_000026
324 Ga0500559_0003510
325 Ga0500616_0000501
326 Ga0500622_0007306
327 Ga0500622_0012332
328 Ga0500639_028089
329 Ga0501084_0012423
330 Ga0501082_0009284
331 Ga0501082_0154428
332 Ga0501082_0378004
333 Ga0501082_0460850
334 Ga0501082_0492123
335 Ga0530510_0018029
336 Ga0530510_0369421
337 2587916229
338 2644226265
339 2644235753
340 2644735944
341 2829748231
342 2841762073
343 2842694480
344 2844105098
345 2851183422
346 2851248086
347 2857506470
348 2883357968
349 2884300234
350 2884964348
351 2891090010
352 2902333852
353 2902405664
354 2917699443
355 2928533629
356 8057529764

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

8

203

0.98

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

14

227

0.89

PF08659

KR

KR domain

9

186

0.86

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

10

199

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3i1j-assembly1.cif.gz_A structure of a putative short chain dehydrogenase from pseudomonas syringae 0.9664 1 232
3g1t-assembly1.cif.gz_A-2 crystal structure of short chain dehydrogenase from salmonella enterica subsp. enterica serovar typhi str. ct18 0.9629 4 235
3gz4-assembly1.cif.gz_B crystal structure of putative short chain dehydrogenase from escherichia coli cft073 complexed with nadph 0.9595 4 235
3f1l-assembly1.cif.gz_B the 0.95 a structure of an oxidoreductase, ycik from e.coli 0.9552 4 235
3gy0-assembly1.cif.gz_A-2 crystal structure of putatitve short chain dehydrogenase from shigella flexneri 2a str. 301 complexed with nadp 0.9552 1 235
ID Description Score Start End Superfamily
4z0tA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.955 3 234 3.40.50.720
af_A0A0N7KIR0_69_250_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9501 3 163 3.40.50.720
af_A0A0P0Y501_3_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9468 3 198 3.40.50.720
af_O01758_69_340_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9404 7 193 3.40.50.720
4z0tA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9391 3 234 3.40.50.720
ID Description Score Start End GO Terms
AF-B6JGX6-F1-model_v4 Short-chain dehydrogenase/reductase family 0.9973 4 234 GO:0016491
AF-A0A5N7YF35-F1-model_v4 deleted 0.9959 1 95
AF-A0A3N1MDE4-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9925 12 233 GO:0008667
GO:0016020
GO:0019290
AF-A0A7Z1UQZ7-F1-model_v4 deleted 0.9905 1 232
AF-A8U1S4-F1-model_v4 Short-chain dehydrogenase/reductase SDR 0.989 1 235 GO:0016491

Map