F268201

General Info

Members Datasets Scaffolds Average Seq Length
176 154 352 263

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10202179|Ga0114129_102021792
Length 306
Sequence MLALRARQPWARRLPLEPEGAELCAERPPEAAVVQGILSPGAKDDSESKTASGCHRASTGIGYELAKCCAEEGFDLVVVADEPEIMTAGKDFEALGAKIDCLQADLAQVEGVDKLCRLIGERPVEALLANAGRGLGKGVLDQDFDDVLQVINTNITGTVYLIQKVGRGMRERSRGRILITGSIAGFVPGTYQAVYNASKAFLDSFSFALRAELKNTGITVTCLMPGATETEFFARADMLDTKIGQGKKDDAAEVARTGFKAMMKGEGDVVTGWHNKLQSAIANVTPASILAELHRKKAEPASAAKS

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300003349 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM Metagenome Rhizosphere
3 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
4 3300004800 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
10 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
11 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
12 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
25 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
29 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
30 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
38 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
39 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
40 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
41 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027682 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
60 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
61 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
62 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
70 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
72 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
73 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
74 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
75 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
76 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
77 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
78 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
79 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
80 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
81 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
82 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
83 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
84 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
85 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
86 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
87 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
88 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
89 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
90 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
91 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
92 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
93 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
94 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
98 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
99 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
100 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
101 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
104 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
105 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
106 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
107 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
108 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
109 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
110 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
111 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
112 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
113 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
114 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
115 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
124 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
125 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
126 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
127 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
128 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
129 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
130 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
131 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
132 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
133 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
134 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
135 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
136 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
137 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
138 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
139 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
140 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
141 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
142 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
143 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
144 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
145 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
146 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
147 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
148 2643221637 Rhizobium sp. Root1212 Isolate Unclassified
149 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
150 2643221718 Rhizobium sp. Root268 Isolate Unclassified
151 2839993093 Phyllobacterium endophyticum PEPV15 Isolate Unclassified
152 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
153 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
154 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.75
Metatranscriptomes 0.57
Isolates 5.68

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.66
Nodule 0.57
Rhizoplane 4.55
Rhizosphere 72.73
Stem 0
Stem Tuber 0
Unclassified 2.84

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10202179 3300009147 Bacteria 2690
2 JGI26129J50193_1000675 3300003349 Bacteria 2188
3 JGI25405J52794_10005962 3300003911 Bacteria 2217
4 Ga0058861_10027156 3300004800 Bacteria 1022
5 Ga0070658_10002452 3300005327 Bacteria 15516
6 Ga0070682_100008543 3300005337 Bacteria 5784
7 Ga0068868_100102182 3300005338 Bacteria 2321
8 Ga0070660_100147340 3300005339 Bacteria 1891
9 Ga0070691_10033653 3300005341 Bacteria 2412
10 Ga0070667_100449056 3300005367 Bacteria 1178
11 Ga0070694_100027461 3300005444 Bacteria 3696
12 Ga0070662_100074436 3300005457 Bacteria 2512
13 Ga0070679_100479217 3300005530 Bacteria 1188
14 Ga0068853_100012564 3300005539 Bacteria 6890
15 Ga0070695_100009588 3300005545 Bacteria 5767
16 Ga0070704_100509143 3300005549 Bacteria 1046
17 Ga0068855_100000025 3300005563 Bacteria 178174
18 Ga0068855_100117379 3300005563 Bacteria 3049
19 Ga0068857_100037420 3300005577 Bacteria 4298
20 Ga0068854_100715262 3300005578 Bacteria 866
21 Ga0068856_100410377 3300005614 Bacteria 1374
22 Ga0068861_100391244 3300005719 Unclassified 1231
23 Ga0068851_10020504 3300005834 Bacteria 3202
24 Ga0081455_10000749 3300005937 Bacteria 42221
25 Ga0070717_10156518 3300006028 Bacteria 1974
26 Ga0075363_100007692 3300006048 Bacteria 4972
27 Ga0075367_10049378 3300006178 Bacteria 2480
28 Ga0075366_10083929 3300006195 Bacteria 1904
29 Ga0068871_100294512 3300006358 Bacteria 1423
30 Ga0075428_100135984 3300006844 Bacteria 2672
31 Ga0075430_100099929 3300006846 Bacteria 2423
32 Ga0075429_100151496 3300006880 Bacteria 2031
33 Ga0079104_1002120 3300006946 Bacteria 11314
34 Ga0105239_10107236 3300010375 Bacteria 3094
35 Ga0163162_10122284 3300013306 Bacteria 2708
36 Ga0163162_10141655 3300013306 Bacteria 2518
37 Ga0163162_10765810 3300013306 Bacteria 1084
38 Ga0157372_10295237 3300013307 Bacteria 1885
39 Ga0163163_10041278 3300014325 Bacteria 4511
40 Ga0157376_10164438 3300014969 Bacteria 2015
41 Ga0213876_10020370 3300021384 Bacteria 3505
42 Ga0213875_10000120 3300021388 Bacteria 88115
43 Ga0213875_10000518 3300021388 Bacteria 32042
44 Ga0213871_10018181 3300021441 Bacteria 1717
45 Ga0207657_10014335 3300025919 Bacteria 7741
46 Ga0207652_10007598 3300025921 Bacteria 8729
47 Ga0207690_10101564 3300025932 Bacteria 2055
48 Ga0207706_10048364 3300025933 Bacteria 3761
49 Ga0207706_10179396 3300025933 Bacteria 1860
50 Ga0207667_10000089 3300025949 Bacteria 149275
51 Ga0207667_10272161 3300025949 Bacteria 1731
52 Ga0207658_10105955 3300025986 Unclassified 2212
53 Ga0207639_10006606 3300026041 Bacteria 7888
54 Ga0207702_10521582 3300026078 Bacteria 1160
55 Ga0207674_10017430 3300026116 Bacteria 7837
56 Ga0207675_100462975 3300026118 Unclassified 1258
57 Ga0207683_10493761 3300026121 Bacteria 1130
58 Ga0209995_1001271 3300027471 Bacteria 3876
59 Ga0209968_1002359 3300027526 Bacteria 2856
60 Ga0209970_1000062 3300027614 Bacteria 14464
61 Ga0209971_1000016 3300027682 Bacteria 65564
62 Ga0209966_1000086 3300027695 Bacteria 40262
63 Ga0209998_10000186 3300027717 Bacteria 22054
64 Ga0209974_10000576 3300027876 Bacteria 12255
65 Ga0307515_10026414 3300028794 Bacteria 9995
66 Ga0307513_10081210 3300031456 Bacteria 3341
67 Ga0307405_10011506 3300031731 Bacteria 4642
68 Ga0307413_10001313 3300031824 Bacteria 9277
69 Ga0307410_10007067 3300031852 Bacteria 6116
70 Ga0307406_10005905 3300031901 Bacteria 6717
71 Ga0307407_10049623 3300031903 Bacteria 2396
72 Ga0307412_10043376 3300031911 Bacteria 2928
73 Ga0307409_100005987 3300031995 Bacteria 7087
74 Ga0307416_100011604 3300032002 Bacteria 5887
75 Ga0307416_100634872 3300032002 Bacteria 1151
76 Ga0307415_100327831 3300032126 Bacteria 1279
77 Ga0373937_0350313 3300036401 Bacteria 1399
78 Ga0395900_0001749 3300037418 Bacteria 24989
79 Ga0395898_0022165 3300037466 Bacteria 6435
80 Ga0436364_0514631 3300037853 Bacteria 102563
81 Ga0436365_0281288 3300039437 Bacteria 10265
82 Ga0436365_0547335 3300039437 Bacteria 1503
83 Ga0436365_0966972 3300039437 Bacteria 7960
84 Ga0436365_0997051 3300039437 Bacteria 2944
85 Ga0436365_1505962 3300039437 Bacteria 4836
86 Ga0436360_0159251 3300039438 Bacteria 1310
87 Ga0436360_0938400 3300039438 Bacteria 4325
88 Ga0436360_1037370 3300039438 Bacteria 8110
89 Ga0436361_0687238 3300039447 Bacteria 1655
90 Ga0439436_0002810 3300041404 Bacteria 5273
91 Ga0439439_0044876 3300041406 Bacteria 1151
92 Ga0439466_0053185 3300041411 Bacteria 1321
93 Ga0439465_0003620 3300041413 Bacteria 5043
94 Ga0451791_0828812 3300041451 Bacteria 1226
95 Ga0451797_1128484 3300041453 Bacteria 1354
96 Ga0451807_1875050 3300041486 Bacteria 2707
97 Ga0439431_0022083 3300041997 Bacteria 1531
98 Ga0439433_0005890 3300041999 Bacteria 2632
99 Ga0439442_002398 3300042002 Bacteria 3679
100 Ga0439432_001743 3300042006 Bacteria 8136
101 Ga0439432_036856 3300042006 Bacteria 1563
102 Ga0439449_0012811 3300042007 Bacteria 3152
103 Ga0439449_0028495 3300042007 Bacteria 2081
104 Ga0439452_013044 3300042010 Bacteria 2343
105 Ga0439457_007547 3300042014 Bacteria 2606
106 Ga0439462_0002924 3300042015 Bacteria 4044
107 Ga0450898_038174 3300042134 Bacteria 901
108 Ga0439446_0006307 3300042156 Bacteria 3088
109 Ga0439434_0007705 3300042435 Bacteria 3155
110 Ga0451576_0000262 3300045051 Bacteria 128472
111 Ga0466967_0029451 3300045976 Bacteria 4595
112 Ga0466967_0062214 3300045976 Bacteria 3313
113 Ga0495596_0003965 3300046500 Bacteria 7317
114 Ga0495607_0021280 3300046501 Bacteria 4083
115 Ga0495610_0000890 3300046512 Bacteria 27765
116 Ga0495616_0000013 3300046513 Bacteria 202334
117 Ga0495620_0019187 3300046515 Bacteria 3370
118 Ga0495643_0116248 3300046522 Unclassified 1355
119 Ga0495648_0040798 3300046524 Bacteria 2938
120 Ga0495640_0124865 3300046533 Bacteria 1670
121 Ga0495668_0005473 3300046616 Bacteria 8591
122 Ga0495669_0073425 3300046684 Bacteria 1562
123 Ga0495684_0109976 3300047471 Bacteria 2081
124 Ga0495626_0007681 3300048091 Bacteria 5976
125 Ga0496104_0006205 3300048907 Bacteria 10501
126 Ga0496108_0072862 3300048911 Bacteria 2900
127 Ga0496110_0041780 3300048913 Bacteria 4002
128 Ga0496110_0836304 3300048913 Bacteria 826
129 Ga0496117_0044674 3300048920 Bacteria 3207
130 Ga0496118_0002761 3300048921 Bacteria 23040
131 Ga0496126_0004857 3300048929 Bacteria 15741
132 Ga0496126_0189489 3300048929 Bacteria 1743
133 Ga0501031_0086909 3300049568 Bacteria 2039
134 Ga0501033_0008232 3300049570 Bacteria 8074
135 Ga0501033_0146805 3300049570 Bacteria 1703
136 Ga0501034_0274208 3300049571 Bacteria 1627
137 Ga0501036_0110785 3300049572 Bacteria 2319
138 Ga0501036_0409406 3300049572 Bacteria 1131
139 Ga0501039_0277228 3300049575 Bacteria 1318
140 Ga0501042_0446285 3300049578 Bacteria 938
141 Ga0501046_0184673 3300049580 Bacteria 1558
142 Ga0501048_0161049 3300049582 Bacteria 1588
143 Ga0501071_0012970 3300049587 Bacteria 5669
144 Ga0501073_0003726 3300049589 Bacteria 11452
145 Ga0501076_0051663 3300049592 Bacteria 3254
146 Ga0501077_0205254 3300049593 Bacteria 1252
147 Ga0501249_000024 3300049679 Bacteria 92031
148 Ga0501083_0176028 3300049744 Bacteria 1398
149 Ga0501035_0008662 3300049822 Bacteria 9470
150 nmdc:mga03n38_3671_c1 3300050490 Bacteria 4965
151 nmdc:mga00v17_392882_c1 3300050491 Bacteria 901
152 nmdc:mga0k408_209444_c1 3300050493 Bacteria 1164
153 nmdc:mga06z11_109831_c1 3300050494 Bacteria 1526
154 nmdc:mga06z11_219479_c1 3300050494 Bacteria 1111
155 nmdc:mga06z11_231776_c1 3300050494 Unclassified 1082
156 nmdc:mga04h51_137991_c1 3300050495 Bacteria 923
157 nmdc:mga05p37_128156_c1 3300050507 Bacteria 3115
158 nmdc:mga09592_124034_c1 3300050508 Bacteria 2220
159 Ga0500641_0037787 3300053096 Bacteria 1937
160 Ga0500562_071944 3300053108 Bacteria 933
161 Ga0500608_128728 3300053122 Bacteria 1138
162 Ga0500559_0002987 3300053136 Bacteria 8474
163 Ga0500577_0021457 3300053142 Bacteria 2129
164 Ga0500604_0000376 3300053151 Bacteria 12205
165 Ga0500627_0015294 3300053158 Bacteria 2962
166 Ga0501084_0056860 3300054114 Bacteria 3273
167 2587759661 2585428062 Bacteria 6842168
168 2599332620 2599185156 Bacteria 5403036
169 2644202886 2643221636 Bacteria 6583769
170 2644209260 2643221637 Bacteria 5345260
171 2644501006 2643221689 Bacteria 6042950
172 2644652762 2643221718 Bacteria 5345506
173 2839996484 2839993093 Bacteria 5512535
174 2842922895 2842922631 Bacteria 5824079
175 2885194513 2885192300 Bacteria 5882526
176 2929206189 2929199973 Bacteria 7260745
177 Ga0114129_10202179
178 JGI26129J50193_1000675
179 JGI25405J52794_10005962
180 Ga0058861_10027156
181 Ga0070658_10002452
182 Ga0070682_100008543
183 Ga0068868_100102182
184 Ga0070660_100147340
185 Ga0070691_10033653
186 Ga0070667_100449056
187 Ga0070694_100027461
188 Ga0070662_100074436
189 Ga0070679_100479217
190 Ga0068853_100012564
191 Ga0070695_100009588
192 Ga0070704_100509143
193 Ga0068855_100000025
194 Ga0068855_100117379
195 Ga0068857_100037420
196 Ga0068854_100715262
197 Ga0068856_100410377
198 Ga0068861_100391244
199 Ga0068851_10020504
200 Ga0081455_10000749
201 Ga0070717_10156518
202 Ga0075363_100007692
203 Ga0075367_10049378
204 Ga0075366_10083929
205 Ga0068871_100294512
206 Ga0075428_100135984
207 Ga0075430_100099929
208 Ga0075429_100151496
209 Ga0079104_1002120
210 Ga0105239_10107236
211 Ga0163162_10122284
212 Ga0163162_10141655
213 Ga0163162_10765810
214 Ga0157372_10295237
215 Ga0163163_10041278
216 Ga0157376_10164438
217 Ga0213876_10020370
218 Ga0213875_10000120
219 Ga0213875_10000518
220 Ga0213871_10018181
221 Ga0207657_10014335
222 Ga0207652_10007598
223 Ga0207690_10101564
224 Ga0207706_10048364
225 Ga0207706_10179396
226 Ga0207667_10000089
227 Ga0207667_10272161
228 Ga0207658_10105955
229 Ga0207639_10006606
230 Ga0207702_10521582
231 Ga0207674_10017430
232 Ga0207675_100462975
233 Ga0207683_10493761
234 Ga0209995_1001271
235 Ga0209968_1002359
236 Ga0209970_1000062
237 Ga0209971_1000016
238 Ga0209966_1000086
239 Ga0209998_10000186
240 Ga0209974_10000576
241 Ga0307515_10026414
242 Ga0307513_10081210
243 Ga0307405_10011506
244 Ga0307413_10001313
245 Ga0307410_10007067
246 Ga0307406_10005905
247 Ga0307407_10049623
248 Ga0307412_10043376
249 Ga0307409_100005987
250 Ga0307416_100011604
251 Ga0307416_100634872
252 Ga0307415_100327831
253 Ga0373937_0350313
254 Ga0395900_0001749
255 Ga0395898_0022165
256 Ga0436364_0514631
257 Ga0436365_0281288
258 Ga0436365_0547335
259 Ga0436365_0966972
260 Ga0436365_0997051
261 Ga0436365_1505962
262 Ga0436360_0159251
263 Ga0436360_0938400
264 Ga0436360_1037370
265 Ga0436361_0687238
266 Ga0439436_0002810
267 Ga0439439_0044876
268 Ga0439466_0053185
269 Ga0439465_0003620
270 Ga0451791_0828812
271 Ga0451797_1128484
272 Ga0451807_1875050
273 Ga0439431_0022083
274 Ga0439433_0005890
275 Ga0439442_002398
276 Ga0439432_001743
277 Ga0439432_036856
278 Ga0439449_0012811
279 Ga0439449_0028495
280 Ga0439452_013044
281 Ga0439457_007547
282 Ga0439462_0002924
283 Ga0450898_038174
284 Ga0439446_0006307
285 Ga0439434_0007705
286 Ga0451576_0000262
287 Ga0466967_0029451
288 Ga0466967_0062214
289 Ga0495596_0003965
290 Ga0495607_0021280
291 Ga0495610_0000890
292 Ga0495616_0000013
293 Ga0495620_0019187
294 Ga0495643_0116248
295 Ga0495648_0040798
296 Ga0495640_0124865
297 Ga0495668_0005473
298 Ga0495669_0073425
299 Ga0495684_0109976
300 Ga0495626_0007681
301 Ga0496104_0006205
302 Ga0496108_0072862
303 Ga0496110_0041780
304 Ga0496110_0836304
305 Ga0496117_0044674
306 Ga0496118_0002761
307 Ga0496126_0004857
308 Ga0496126_0189489
309 Ga0501031_0086909
310 Ga0501033_0008232
311 Ga0501033_0146805
312 Ga0501034_0274208
313 Ga0501036_0110785
314 Ga0501036_0409406
315 Ga0501039_0277228
316 Ga0501042_0446285
317 Ga0501046_0184673
318 Ga0501048_0161049
319 Ga0501071_0012970
320 Ga0501073_0003726
321 Ga0501076_0051663
322 Ga0501077_0205254
323 Ga0501249_000024
324 Ga0501083_0176028
325 Ga0501035_0008662
326 nmdc:mga03n38_3671_c1
327 nmdc:mga00v17_392882_c1
328 nmdc:mga0k408_209444_c1
329 nmdc:mga06z11_109831_c1
330 nmdc:mga06z11_219479_c1
331 nmdc:mga06z11_231776_c1
332 nmdc:mga04h51_137991_c1
333 nmdc:mga05p37_128156_c1
334 nmdc:mga09592_124034_c1
335 Ga0500641_0037787
336 Ga0500562_071944
337 Ga0500608_128728
338 Ga0500559_0002987
339 Ga0500577_0021457
340 Ga0500604_0000376
341 Ga0500627_0015294
342 Ga0501084_0056860
343 2587759661
344 2599332620
345 2644202886
346 2644209260
347 2644501006
348 2644652762
349 2839996484
350 2842922895
351 2885194513
352 2929206189

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

56

238

0.96

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

56

270

0.9

PF08659

KR

KR domain

57

227

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
7lg9-assembly1.cif.gz_B chsb1 0.8916 5 172
7e24-assembly2.cif.gz_C crystal structure of sdr family nad(p)-dependent oxidoreductase from exiguobacterium 0.8899 5 215
7e3x-assembly1.cif.gz_B crystal structure of sdr family nad(p)-dependent oxidoreductase from exiguobacterium 0.8843 5 220
2q2v-assembly2.cif.gz_D structure of d-3-hydroxybutyrate dehydrogenase from pseudomonas putida 0.8824 5 218
2jap-assembly1.cif.gz_C clavulanic acid dehydrogenase: structural and biochemical analysis of the final step in the biosynthesis of the beta-lactamase inhibitor clavulanic acid 0.8789 5 216
ID Description Score Start End Superfamily
af_C6T421_12_106_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9472 5 75 3.40.50.720
af_Q10782_3_250_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9107 2 235 3.40.50.720
af_A0A0P0Y501_3_211_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9062 5 181 3.40.50.720
af_Q0JEC9_1_74_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9009 5 57 3.40.50.720
af_I6YB11_7_265_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8998 4 216 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A520EQZ9-F1-model_v4 deleted 0.99 5 125
AF-A0A7V9Q4H5-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9876 2 131 GO:0016491
AF-A0A520BVJ1-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9738 1 136 GO:0016020
GO:0016491
AF-A0A4R9VHW7-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9647 1 108 GO:0016020
GO:0016491
AF-A0A0S4LUV8-F1-model_v4 Uncharacterized protein 0.9628 1 139 GO:0016491

Map