F266598

General Info

Members Datasets Scaffolds Average Seq Length
175 131 163 186

Family's Representative Sequence

Representative Sequence 3300031616|Ga0307508_10001352|Ga0307508_1000135231
Length 206
Sequence MSKTQYYTATSLDGFIATEEDSLEWLFPLAGIGESSFPAFIAEVGALAMGSVTYEWMVRNAEKVAAETGSAWPYTQPAWIFSNRLLPGIDGADIRFVKGDVRQVHLAMRAAAGRKNIWLVGGGDLAGQFYDAGLLDELIIQIGSATLGQGKPLFPRRVLSPHLRLVSVRQVGSGMAELRYEVHTGKMPVSEASESTAPSDRTSLEH

Samples

Sample ID Description Type Environment
1 2643221638 Duganella sp. Root336D2 Isolate Unclassified
2 2643221664 Massilia sp. Root418 Isolate Unclassified
3 2721755523 Delftia sp. HK171 Isolate Unclassified
4 2738541300 Massilia sp. GV016 Isolate Unclassified
5 2738543018 Massilia sp. GV045 Isolate Unclassified
6 2738543030 Massilia sp. GV097 Isolate Unclassified
7 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
8 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
9 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
10 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
11 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
12 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
13 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
14 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
15 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
16 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
17 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
19 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
20 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
21 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
22 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
23 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
24 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
25 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
26 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
27 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
28 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
30 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
31 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
32 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
33 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
42 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
43 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
45 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
53 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
54 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
55 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
56 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
57 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
58 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
61 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
62 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
63 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
77 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
80 3300030736 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 6 Metagenome Rhizosphere
81 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
82 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
83 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
84 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300035092 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_11 Metagenome Rhizosphere
89 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
90 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
91 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
92 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
93 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
94 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
95 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
96 3300042130 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC1030L_E14_070516_97 Metagenome Rhizosphere
97 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
98 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
99 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
100 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
101 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
102 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
103 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
104 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
105 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
106 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
107 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
108 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
109 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
113 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
114 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
117 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
118 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
121 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
122 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
123 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
124 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
125 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
126 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
127 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
128 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
129 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
130 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
131 8015556637 Bdellovibrio reynosensis LBG001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.14
Metatranscriptomes 0
Isolates 6.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 32.57
Nodule 1.71
Rhizoplane 2.29
Rhizosphere 56
Stem 0
Stem Tuber 0
Unclassified 7.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10022998 3300002067 Bacteria 1893
2 JGI25158J39367_1000256 3300002739 Bacteria 12133
3 JGI25152J39213_1000293 3300002773 Bacteria 32929
4 JGI25150J39212_1001383 3300002774 Bacteria 6873
5 JGI25159J45721_1000536 3300002987 Bacteria 17286
6 JGI25406J46586_10022443 3300003203 Bacteria 2514
7 rootL2_10148193 3300003322 Bacteria 1241
8 rootH1_10356665 3300003323 Bacteria 1175
9 JGI25161J50226_1000545 3300003374 Bacteria 16078
10 Ga0055526_1001969 3300003771 Bacteria 14186
11 Ga0055537_1006905 3300003773 Bacteria 2809
12 Ga0055537_1007088 3300003773 Bacteria 2753
13 Ga0055524_1000587 3300003775 Bacteria 26365
14 Ga0055524_1003594 3300003775 Bacteria 7476
15 Ga0055524_1003954 3300003775 Bacteria 7013
16 Ga0055524_1017459 3300003775 Bacteria 2532
17 Ga0055536_1008863 3300003781 Bacteria 4252
18 Ga0055534_1004258 3300003784 Bacteria 4211
19 Ga0055530_10001297 3300003791 Bacteria 18865
20 Ga0055530_10004059 3300003791 Bacteria 7852
21 Ga0055531_10007379 3300003794 Bacteria 6020
22 Ga0055531_10018676 3300003794 Bacteria 2848
23 Ga0055531_10028331 3300003794 Bacteria 1935
24 JGI25405J52794_10068851 3300003911 Bacteria 771
25 Ga0055543_1000692 3300004625 Bacteria 17340
26 Ga0065165_1002918 3300005262 Bacteria 13073
27 Ga0070670_100441127 3300005331 Bacteria 1153
28 Ga0068867_100314053 3300005459 Bacteria 1296
29 Ga0070665_100577651 3300005548 Bacteria 1137
30 Ga0068864_100255555 3300005618 Bacteria 1628
31 Ga0068858_100311202 3300005842 Bacteria 1504
32 Ga0068860_101141908 3300005843 Unclassified 799
33 Ga0081455_10017499 3300005937 Bacteria 6868
34 Ga0081539_10000289 3300005985 Bacteria 113859
35 Ga0068871_100497773 3300006358 Unclassified 1098
36 Ga0075428_100979318 3300006844 Unclassified 896
37 Ga0079104_1000004 3300006946 Bacteria 444549
38 Ga0105250_10014949 3300009092 Bacteria 3183
39 Ga0111539_10238027 3300009094 Bacteria 2119
40 Ga0105243_10002249 3300009148 Bacteria 16225
41 Ga0105243_10495268 3300009148 Bacteria 1157
42 Ga0105242_10359156 3300009176 Bacteria 1348
43 Ga0157378_10057419 3300013297 Bacteria 3469
44 Ga0163162_10263826 3300013306 Unclassified 1854
45 Ga0157372_10728727 3300013307 Bacteria 1153
46 Ga0163163_10880043 3300014325 Bacteria 959
47 Ga0157379_10153075 3300014968 Bacteria 2080
48 Ga0157376_10069862 3300014969 Bacteria 2979
49 Ga0182007_10112180 3300015262 Unclassified 908
50 Ga0209436_100307 3300025208 Bacteria 22491
51 Ga0207425_1000013 3300025245 Bacteria 497384
52 Ga0209129_1000102 3300025258 Bacteria 161712
53 Ga0209565_1005120 3300025263 Bacteria 3856
54 Ga0209565_1008100 3300025263 Bacteria 2777
55 Ga0209565_1008271 3300025263 Unclassified 2734
56 Ga0209130_1001115 3300025284 Bacteria 19753
57 Ga0209130_1003395 3300025284 Bacteria 6812
58 Ga0209675_1000709 3300025291 Bacteria 22778
59 Ga0209675_1023758 3300025291 Bacteria 1580
60 Ga0209676_1001925 3300025292 Bacteria 16779
61 Ga0209676_1002081 3300025292 Bacteria 15516
62 Ga0209676_1003793 3300025292 Bacteria 8939
63 Ga0209025_1066442 3300025294 Bacteria 1309
64 Ga0209564_1000088 3300025295 Bacteria 250268
65 Ga0209564_1006692 3300025295 Bacteria 6127
66 Ga0209564_1015592 3300025295 Bacteria 3079
67 Ga0209564_1016364 3300025295 Bacteria 2956
68 Ga0209758_1000031 3300025297 Bacteria 497252
69 Ga0209050_1000498 3300025298 Bacteria 66909
70 Ga0209050_1001488 3300025298 Bacteria 24908
71 Ga0209050_1001961 3300025298 Bacteria 19474
72 Ga0209050_1002020 3300025298 Bacteria 18909
73 Ga0209256_1000560 3300025299 Bacteria 53201
74 Ga0209256_1001335 3300025299 Bacteria 26336
75 Ga0209256_1001712 3300025299 Bacteria 21067
76 Ga0209256_1003306 3300025299 Bacteria 11473
77 Ga0209051_1012772 3300025303 Bacteria 4043
78 Ga0209257_1000452 3300025304 Bacteria 77144
79 Ga0209257_1000498 3300025304 Bacteria 70112
80 Ga0207696_1011308 3300025711 Bacteria 3223
81 Ga0207659_10132125 3300025926 Bacteria 1928
82 Ga0207644_10089723 3300025931 Bacteria 2289
83 Ga0207706_10026784 3300025933 Bacteria 5160
84 Ga0207709_10000019 3300025935 Bacteria 402225
85 Ga0207677_10043987 3300026023 Bacteria 2972
86 Ga0207648_10409629 3300026089 Bacteria 1229
87 Ga0207676_11047865 3300026095 Unclassified 805
88 Ga0207683_11407125 3300026121 Bacteria 645
89 Ga0209281_1000005 3300027111 Bacteria 1242284
90 Ga0268266_10002285 3300028379 Bacteria 20799
91 Ga0268264_10810218 3300028381 Bacteria 936
92 Ga0316177_1169245 3300030731 Bacteria 1947
93 Ga0316180_1009533 3300030736 Bacteria 2041
94 Ga0316182_1164309 3300030745 Bacteria 1804
95 Ga0307408_100001475 3300031548 Bacteria 17461
96 Ga0307408_100003783 3300031548 Bacteria 10307
97 Ga0307408_100371245 3300031548 Bacteria 1220
98 Ga0307508_10001352 3300031616 Bacteria 27659
99 Ga0307410_10777388 3300031852 Bacteria 813
100 Ga0307409_100300029 3300031995 Bacteria 1494
101 Ga0307416_100641364 3300032002 Bacteria 1146
102 Ga0307414_10000003 3300032004 Bacteria 519751
103 Ga0307414_10175976 3300032004 Bacteria 1716
104 Ga0373952_0000093 3300035092 Bacteria 12078
105 Ga0395899_0049869 3300037312 Bacteria 3110
106 Ga0395900_0007464 3300037418 Bacteria 11300
107 Ga0395900_0077031 3300037418 Bacteria 3426
108 Ga0395900_1357501 3300037418 Bacteria 624
109 Ga0395898_0016522 3300037466 Bacteria 7548
110 Ga0395898_0056145 3300037466 Bacteria 3839
111 Ga0395898_0066858 3300037466 Bacteria 3481
112 Ga0395898_1035073 3300037466 Bacteria 756
113 Ga0395905_0000025 3300037471 Bacteria 317571
114 Ga0395905_0497948 3300037471 Bacteria 1118
115 Ga0395901_0002649 3300038443 Bacteria 18089
116 Ga0395901_0066962 3300038443 Bacteria 3740
117 Ga0395901_0319117 3300038443 Bacteria 1608
118 Ga0439461_0035491 3300041410 Bacteria 1058
119 Ga0450923_041062 3300042125 Bacteria 972
120 Ga0450892_007592 3300042130 Unclassified 917
121 Ga0439446_0037543 3300042156 Bacteria 1418
122 Ga0450918_000154 3300042531 Bacteria 15185
123 Ga0451577_0252747 3300042876 Bacteria 1596
124 Ga0453684_0078756 3300044712 Bacteria 4123
125 Ga0453684_1212306 3300044712 Bacteria 792
126 Ga0466970_0038444 3300044765 Bacteria 2538
127 Ga0466967_0053729 3300045976 Bacteria 3542
128 Ga0466967_0451234 3300045976 Bacteria 1257
129 Ga0495638_0089244 3300046460 Bacteria 1860
130 Ga0495638_0113389 3300046460 Bacteria 1608
131 Ga0495606_0023481 3300046507 Bacteria 4466
132 Ga0495606_0073497 3300046507 Bacteria 2145
133 Ga0495606_0269312 3300046507 Bacteria 936
134 Ga0495642_0208926 3300046528 Bacteria 851
135 Ga0495597_0023058 3300046542 Bacteria 2881
136 Ga0495625_0005246 3300046660 Bacteria 11921
137 Ga0495625_0266789 3300046660 Bacteria 1106
138 Ga0495649_0090016 3300046694 Bacteria 1636
139 Ga0495660_0000339 3300046810 Bacteria 41484
140 Ga0495660_0054553 3300046810 Bacteria 2165
141 Ga0495686_0008183 3300047472 Bacteria 7717
142 Ga0496100_0137910 3300048903 Unclassified 1726
143 Ga0496102_0335594 3300048905 Unclassified 1424
144 Ga0496106_0487756 3300048909 Unclassified 990
145 Ga0496115_0047044 3300048918 Unclassified 3449
146 Ga0496121_0030171 3300048924 Bacteria 4987
147 Ga0496125_0058214 3300048928 Bacteria 3123
148 Ga0496126_0007103 3300048929 Bacteria 12334
149 Ga0501031_0241001 3300049568 Bacteria 1176
150 Ga0501033_0468191 3300049570 Bacteria 874
151 Ga0501073_0003392 3300049589 Bacteria 11979
152 Ga0501076_0343199 3300049592 Bacteria 1226
153 Ga0501280_000437 3300049776 Bacteria 9980
154 Ga0501044_0392317 3300049823 Bacteria 1302
155 nmdc:mga03683_94302_c1 3300050489 Bacteria 1308
156 nmdc:mga0n895_301642_c1 3300050512 Bacteria 1624
157 Ga0500594_0135208 3300053118 Bacteria 783
158 Ga0500614_043030 3300053123 Bacteria 1156
159 Ga0500568_0048184 3300053139 Bacteria 1686
160 Ga0500568_0077970 3300053139 Bacteria 1260
161 Ga0500622_0001578 3300053156 Bacteria 17941
162 Ga0530510_0461824 3300061734 Bacteria 961
163 Ga0530510_0667237 3300061734 Unclassified 792

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026121 Ga0207683_11407125 Ga0207683_114071251 156
2 3300009094 Ga0111539_10238027 Ga0111539_102380273 165
3 3300044765 Ga0466970_0038444 Ga0466970_0038444_1846_2418 173
4 iso_pu_bacteria 8015556637 8015556643 175
5 3300045976 Ga0466967_0451234 Ga0466967_0451234_47_613 178
6 iso_pu_bacteria 2643221638 2644214315 179
7 iso_pu_bacteria 2643221664 2644355758 179
8 iso_pu_bacteria 2721755523 2722884357 179
9 iso_pu_bacteria 2738541300 2738841345 179
10 iso_pu_bacteria 2738543018 2739272215 179
11 iso_pu_bacteria 2738543030 2739341259 179
12 iso_pu_bacteria 2839138175 2839139426 179
13 iso_pu_bacteria 2894023352 2894025548 179
14 iso_pu_bacteria 2928115317 2928119018 179
15 iso_pu_bacteria 2939631187 2939631694 179
16 3300046460 Ga0495638_0113389 Ga0495638_0113389_728_1279 180
17 3300003203 JGI25406J46586_10022443 JGI25406J46586_100224432 181
18 3300003775 Ga0055524_1003594 Ga0055524_10035943 181
19 3300003781 Ga0055536_1008863 Ga0055536_10088635 181
20 3300003791 Ga0055530_10004059 Ga0055530_100040597 181
21 3300003794 Ga0055531_10007379 Ga0055531_100073793 181
22 3300003794 Ga0055531_10028331 Ga0055531_100283312 181
23 3300003911 JGI25405J52794_10068851 JGI25405J52794_100688511 181
24 3300005937 Ga0081455_10017499 Ga0081455_100174993 181
25 3300005985 Ga0081539_10000289 Ga0081539_1000028969 181
26 3300006844 Ga0075428_100979318 Ga0075428_1009793181 181
27 3300025284 Ga0209130_1003395 Ga0209130_10033955 181
28 3300025291 Ga0209675_1023758 Ga0209675_10237582 181
29 3300025292 Ga0209676_1002081 Ga0209676_10020818 181
30 3300025295 Ga0209564_1015592 Ga0209564_10155922 181
31 3300025295 Ga0209564_1016364 Ga0209564_10163641 181
32 3300025298 Ga0209050_1001961 Ga0209050_100196123 181
33 3300025298 Ga0209050_1002020 Ga0209050_100202018 181
34 3300025299 Ga0209256_1001712 Ga0209256_10017124 181
35 3300025303 Ga0209051_1012772 Ga0209051_10127724 181
36 3300025304 Ga0209257_1000452 Ga0209257_100045225 181
37 3300041410 Ga0439461_0035491 Ga0439461_0035491_284_832 181
38 3300042156 Ga0439446_0037543 Ga0439446_0037543_677_1225 181
39 3300061734 Ga0530510_0667237 Ga0530510_0667237_84_638 181
40 3300002773 JGI25152J39213_1000293 JGI25152J39213_100029319 182
41 3300002774 JGI25150J39212_1001383 JGI25150J39212_10013836 182
42 3300003775 Ga0055524_1000587 Ga0055524_100058719 182
43 3300005843 Ga0068860_101141908 Ga0068860_1011419081 182
44 3300013306 Ga0163162_10263826 Ga0163162_102638262 182
45 3300014325 Ga0163163_10880043 Ga0163163_108800432 182
46 3300025245 Ga0207425_1000013 Ga0207425_1000013123 182
47 3300025258 Ga0209129_1000102 Ga0209129_1000102147 182
48 3300025263 Ga0209565_1008271 Ga0209565_10082714 182
49 3300025297 Ga0209758_1000031 Ga0209758_1000031341 182
50 3300025299 Ga0209256_1000560 Ga0209256_100056038 182
51 3300028381 Ga0268264_10810218 Ga0268264_108102181 182
52 3300049570 Ga0501033_0468191 Ga0501033_0468191_280_831 182
53 iso_pu_bacteria 2786546940 2788433793 182
54 3300002739 JGI25158J39367_1000256 JGI25158J39367_10002564 183
55 3300002987 JGI25159J45721_1000536 JGI25159J45721_100053620 183
56 3300003322 rootL2_10148193 rootL2_101481933 183
57 3300003323 rootH1_10356665 rootH1_103566652 183
58 3300003374 JGI25161J50226_1000545 JGI25161J50226_100054510 183
59 3300003771 Ga0055526_1001969 Ga0055526_10019696 183
60 3300003773 Ga0055537_1006905 Ga0055537_10069052 183
61 3300003773 Ga0055537_1007088 Ga0055537_10070883 183
62 3300003775 Ga0055524_1003954 Ga0055524_10039542 183
63 3300003775 Ga0055524_1017459 Ga0055524_10174592 183
64 3300003784 Ga0055534_1004258 Ga0055534_10042584 183
65 3300003791 Ga0055530_10001297 Ga0055530_1000129711 183
66 3300003794 Ga0055531_10018676 Ga0055531_100186763 183
67 3300004625 Ga0055543_1000692 Ga0055543_100069211 183
68 3300005262 Ga0065165_1002918 Ga0065165_100291819 183
69 3300005331 Ga0070670_100441127 Ga0070670_1004411272 183
70 3300005459 Ga0068867_100314053 Ga0068867_1003140531 183
71 3300005548 Ga0070665_100577651 Ga0070665_1005776512 183
72 3300005618 Ga0068864_100255555 Ga0068864_1002555553 183
73 3300006946 Ga0079104_1000004 Ga0079104_1000004230 183
74 3300009092 Ga0105250_10014949 Ga0105250_100149493 183
75 3300009148 Ga0105243_10002249 Ga0105243_1000224914 183
76 3300009148 Ga0105243_10495268 Ga0105243_104952681 183
77 3300009176 Ga0105242_10359156 Ga0105242_103591562 183
78 3300013297 Ga0157378_10057419 Ga0157378_100574194 183
79 3300013307 Ga0157372_10728727 Ga0157372_107287272 183
80 3300015262 Ga0182007_10112180 Ga0182007_101121801 183
81 3300025208 Ga0209436_100307 Ga0209436_10030715 183
82 3300025263 Ga0209565_1005120 Ga0209565_10051202 183
83 3300025263 Ga0209565_1008100 Ga0209565_10081002 183
84 3300025284 Ga0209130_1001115 Ga0209130_100111520 183
85 3300025291 Ga0209675_1000709 Ga0209675_100070915 183
86 3300025292 Ga0209676_1001925 Ga0209676_10019255 183
87 3300025292 Ga0209676_1003793 Ga0209676_10037932 183
88 3300025294 Ga0209025_1066442 Ga0209025_10664422 183
89 3300025295 Ga0209564_1000088 Ga0209564_100008812 183
90 3300025295 Ga0209564_1006692 Ga0209564_10066924 183
91 3300025298 Ga0209050_1000498 Ga0209050_100049839 183
92 3300025298 Ga0209050_1001488 Ga0209050_100148816 183
93 3300025299 Ga0209256_1001335 Ga0209256_100133512 183
94 3300025299 Ga0209256_1003306 Ga0209256_100330611 183
95 3300025304 Ga0209257_1000498 Ga0209257_100049865 183
96 3300025711 Ga0207696_1011308 Ga0207696_10113082 183
97 3300025926 Ga0207659_10132125 Ga0207659_101321251 183
98 3300025931 Ga0207644_10089723 Ga0207644_100897232 183
99 3300025933 Ga0207706_10026784 Ga0207706_100267844 183
100 3300025935 Ga0207709_10000019 Ga0207709_10000019327 183
101 3300026023 Ga0207677_10043987 Ga0207677_100439873 183
102 3300026089 Ga0207648_10409629 Ga0207648_104096292 183
103 3300026095 Ga0207676_11047865 Ga0207676_110478651 183
104 3300027111 Ga0209281_1000005 Ga0209281_1000005439 183
105 3300028379 Ga0268266_10002285 Ga0268266_100022853 183
106 3300030731 Ga0316177_1169245 Ga0316177_11692453 183
107 3300030736 Ga0316180_1009533 Ga0316180_10095332 183
108 3300030745 Ga0316182_1164309 Ga0316182_11643093 183
109 3300031548 Ga0307408_100001475 Ga0307408_10000147515 183
110 3300031548 Ga0307408_100003783 Ga0307408_10000378313 183
111 3300031548 Ga0307408_100371245 Ga0307408_1003712452 183
112 3300031995 Ga0307409_100300029 Ga0307409_1003000292 183
113 3300032002 Ga0307416_100641364 Ga0307416_1006413642 183
114 3300032004 Ga0307414_10000003 Ga0307414_10000003385 183
115 3300032004 Ga0307414_10175976 Ga0307414_101759762 183
116 3300035092 Ga0373952_0000093 Ga0373952_0000093_1196_1768 183
117 3300037312 Ga0395899_0049869 Ga0395899_0049869_1541_2110 183
118 3300037418 Ga0395900_0007464 Ga0395900_0007464_8886_9458 183
119 3300037418 Ga0395900_0077031 Ga0395900_0077031_976_1545 183
120 3300037418 Ga0395900_1357501 Ga0395900_1357501_46_609 183
121 3300037466 Ga0395898_0016522 Ga0395898_0016522_5847_6419 183
122 3300037466 Ga0395898_0056145 Ga0395898_0056145_2137_2709 183
123 3300037466 Ga0395898_0066858 Ga0395898_0066858_419_988 183
124 3300037466 Ga0395898_1035073 Ga0395898_1035073_25_588 183
125 3300037471 Ga0395905_0000025 Ga0395905_0000025_310988_311560 183
126 3300037471 Ga0395905_0497948 Ga0395905_0497948_231_803 183
127 3300038443 Ga0395901_0002649 Ga0395901_0002649_2137_2709 183
128 3300038443 Ga0395901_0066962 Ga0395901_0066962_2126_2695 183
129 3300038443 Ga0395901_0319117 Ga0395901_0319117_282_845 183
130 3300042125 Ga0450923_041062 Ga0450923_041062_357_929 183
131 3300042130 Ga0450892_007592 Ga0450892_007592_76_648 183
132 3300042531 Ga0450918_000154 Ga0450918_000154_262_834 183
133 3300042876 Ga0451577_0252747 Ga0451577_0252747_876_1439 183
134 3300044712 Ga0453684_1212306 Ga0453684_1212306_66_638 183
135 3300046460 Ga0495638_0089244 Ga0495638_0089244_755_1327 183
136 3300046507 Ga0495606_0023481 Ga0495606_0023481_193_750 183
137 3300046507 Ga0495606_0073497 Ga0495606_0073497_1332_1889 183
138 3300046507 Ga0495606_0269312 Ga0495606_0269312_49_618 183
139 3300046528 Ga0495642_0208926 Ga0495642_0208926_191_748 183
140 3300046542 Ga0495597_0023058 Ga0495597_0023058_777_1346 183
141 3300046660 Ga0495625_0005246 Ga0495625_0005246_557_1126 183
142 3300046660 Ga0495625_0266789 Ga0495625_0266789_89_646 183
143 3300046694 Ga0495649_0090016 Ga0495649_0090016_910_1470 183
144 3300046810 Ga0495660_0000339 Ga0495660_0000339_9757_10314 183
145 3300046810 Ga0495660_0054553 Ga0495660_0054553_1008_1577 183
146 3300047472 Ga0495686_0008183 Ga0495686_0008183_2066_2623 183
147 3300048903 Ga0496100_0137910 Ga0496100_0137910_768_1331 183
148 3300048905 Ga0496102_0335594 Ga0496102_0335594_10_573 183
149 3300048909 Ga0496106_0487756 Ga0496106_0487756_10_573 183
150 3300048918 Ga0496115_0047044 Ga0496115_0047044_160_723 183
151 3300048924 Ga0496121_0030171 Ga0496121_0030171_3129_3695 183
152 3300048928 Ga0496125_0058214 Ga0496125_0058214_731_1288 183
153 3300049568 Ga0501031_0241001 Ga0501031_0241001_420_995 183
154 3300049589 Ga0501073_0003392 Ga0501073_0003392_7000_7563 183
155 3300049592 Ga0501076_0343199 Ga0501076_0343199_544_1116 183
156 3300049776 Ga0501280_000437 Ga0501280_000437_1810_2382 183
157 3300049823 Ga0501044_0392317 Ga0501044_0392317_80_637 183
158 3300050489 nmdc:mga03683_94302_c1 nmdc:mga03683_94302_c1_424_996 183
159 3300050512 nmdc:mga0n895_301642_c1 nmdc:mga0n895_301642_c1_623_1192 183
160 3300053118 Ga0500594_0135208 Ga0500594_0135208_195_767 183
161 3300053139 Ga0500568_0048184 Ga0500568_0048184_541_1095 183
162 3300053139 Ga0500568_0077970 Ga0500568_0077970_286_864 183
163 3300053156 Ga0500622_0001578 Ga0500622_0001578_14478_15032 183
164 3300061734 Ga0530510_0461824 Ga0530510_0461824_336_905 183
165 3300002067 JGI24735J21928_10022998 JGI24735J21928_100229983 184
166 3300005842 Ga0068858_100311202 Ga0068858_1003112022 184
167 3300006358 Ga0068871_100497773 Ga0068871_1004977732 184
168 3300014968 Ga0157379_10153075 Ga0157379_101530753 184
169 3300014969 Ga0157376_10069862 Ga0157376_100698623 184
170 3300031616 Ga0307508_10001352 Ga0307508_1000135231 184
171 3300031852 Ga0307410_10777388 Ga0307410_107773882 184
172 3300044712 Ga0453684_0078756 Ga0453684_0078756_737_1309 184
173 3300045976 Ga0466967_0053729 Ga0466967_0053729_370_930 184
174 3300048929 Ga0496126_0007103 Ga0496126_0007103_7357_7920 184
175 3300053123 Ga0500614_043030 Ga0500614_043030_473_1060 184

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01872

RibD_C

RibD C-terminal domain

100

176

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
2xw7-assembly1.cif.gz_B structure of mycobacterium smegmatis putative reductase ms0308 0.9045 1 183
2xw7-assembly1.cif.gz_B structure of mycobacterium smegmatis putative reductase ms0308 0.8946 1 183
7xh2-assembly1.cif.gz_A dihydrofolate reductase-like protein sach in safracin biosynthesis 0.8749 1 181
7xh2-assembly1.cif.gz_A dihydrofolate reductase-like protein sach in safracin biosynthesis 0.8702 1 181
3ky8-assembly1.cif.gz_B crystal structure of putative riboflavin biosynthesis protein (yp_001092907.1) from shewanella sp. pv-4 at 2.12 a resolution 0.8308 2 183
ID Description Score Start End Superfamily
2xw7B00 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.9045 1 183 3.40.430.10
2xw7B00 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.8946 1 183 3.40.430.10
3ky8B01 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.8261 4 180 3.40.430.10
3ky8B01 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.8129 4 180 3.40.430.10
3jtwB00 Alpha Beta;3-Layer(aba) Sandwich;Dihydrofolate Reductase, subunit A;Dihydrofolate Reductase, subunit A 0.8059 1 182 3.40.430.10
ID Description Score Start End GO Terms
AF-A0A4R2IYR9-F1-model_v4 RibD domain-containing protein 0.9515 81 182 GO:0008703
GO:0009231
AF-A0A4V1U7G8-F1-model_v4 deleted 0.9507 70 184
AF-A0A6J4Q1X7-F1-model_v4 Dihydrofolate reductase (EC 1.5.1.3) 0.9503 2 184 GO:0004146
GO:0008703
GO:0009231
AF-A0A142YM13-F1-model_v4 Bacterial bifunctional deaminase-reductase C-terminal domain-containing protein 0.9424 2 183 GO:0008703
GO:0009231
AF-A0A6J4Q1X7-F1-model_v4 Dihydrofolate reductase (EC 1.5.1.3) 0.9403 2 184 GO:0004146
GO:0008703
GO:0009231

Feature Viewer

pLDDT pTM Quality
86.11 0.84 High
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Predicted Structure (AlphaFold2)

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