F265472
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 174 | 107 | 348 | 712 |
Family's Representative Sequence
| Representative Sequence | iso_pu_bacteria|2831426010|2831432103 |
| Length | 754 |
| Sequence | VLNSSVDVPLPEWLKKCFIQSSGSSGDDAENLRRYNDATLICRAFEFAYKLHQGQYRKSGEPYICHPVAVAGLLRDLGGSPAMIAAGFLHDVVEDTDITIEQIEELFGAEVRQLVEGVTKLSKINFKSKKESQAENFRRMFLAMAQDIRVIVVKLADRLHNMRTLQFMPDEKRRRIAQETRDIFAPLANRLGIWHLKWELEDLSFKYLEPDAFRQIQEHVSEKRTSREEKLAKATAILRDRLQQTGIKCLDISGRPKHLYSIYQKMQRQQKEFHEIYDLAALRIIVETNEECYRALAVVHDAFRPIPGRFKDYIGLPKPNRYQSLHTGVIGLTGRPLEVQIRTMEMHHIAEYGIAAHWKYKETGSSNNSHLTATDEKFTWLRQLLEWQSDLKDAQEYLDSVKDNLFEDDVYVFTPKGDVVPLSPGSTSVDFAYRIHTEVGNHCAGTKVNGRMVPLSTRLHNGDIVEIMTHKNSHPSLDWLNFVRTSAAKYRIKQWYKRSRREENVARGRELLEKELGKTGFDSLLKSDAMQSVAEKCNYHSVEDLLAGLGYGEITLNLVLNRWREVVKAQQPMVVAPPYLPKESTATAKALRDAPANYSRSTDSPILGVEGLVYHLAGCCTPIPGEPIIGVVTRGKGISIHRQGCHNVESVEYERLVPVAWNAAAENSSRPHSYPVNIQIEALDRVGVLKDILSRLSDQGINVRYAQVKTAIGQPALMDLGIDIRDRPQLEQVFTQIKKMSDILNIRRVGQIDE |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) | Metagenome | Rhizosphere |
| 2 | 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 3 | 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) | Metagenome | Rhizosphere |
| 4 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 5 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 8 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 9 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 11 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 17 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 19 | 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 22 | 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Metagenome | Rhizosphere |
| 23 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 24 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 25 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 26 | 3300005983 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 | Metagenome | Rhizosphere |
| 27 | 3300006846 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Metagenome | Rhizosphere |
| 28 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 29 | 3300006852 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Metagenome | Rhizosphere |
| 30 | 3300006871 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Metagenome | Rhizosphere |
| 31 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 32 | 3300007076 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Metagenome | Rhizosphere |
| 33 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025912 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 47 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 48 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 49 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 50 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 51 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 52 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 53 | 3300031247 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG | Metagenome | Rhizosphere |
| 54 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 55 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 56 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 57 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 58 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 59 | 3300031665 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 | Metagenome | Rhizosphere |
| 60 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 61 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 62 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 63 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 64 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 65 | 3300033524 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 66 | 3300035083 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 | Metagenome | Rhizosphere |
| 67 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 68 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 69 | 3300038725 | Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 | Metagenome | Unclassified |
| 70 | 3300038726 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 | Metagenome | Unclassified |
| 71 | 3300038727 | Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 | Metagenome | Unclassified |
| 72 | 3300038735 | Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 | Metagenome | Unclassified |
| 73 | 3300038741 | Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 | Metagenome | Unclassified |
| 74 | 3300038742 | Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 | Metagenome | Unclassified |
| 75 | 3300039062 | Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 | Metagenome | Unclassified |
| 76 | 3300039093 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 | Metagenome | Unclassified |
| 77 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 78 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 79 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 80 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 81 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 82 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 84 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 85 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 86 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 87 | 3300049743 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 | Metagenome | Rhizosphere |
| 88 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 89 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 90 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 91 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 92 | 3300050512 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation | Metagenome | Rhizosphere |
| 93 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 94 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 95 | 3300053122 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere | Metagenome | Endosphere |
| 96 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 97 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
| 98 | 2831426010 | Nostoc sp. 106C | Isolate | Unclassified |
| 99 | 2617270889 | Nostoc punctiforme PCC 73102 | Isolate | Unclassified |
| 100 | 2740891818 | Desulfofaba hansenii DSM 12642 | Isolate | Unclassified |
| 101 | 2848694841 | Nostoc sp. RF31YmG | Isolate | Unclassified |
| 102 | 2849660919 | Nostoc sp. T09 | Isolate | Unclassified |
| 103 | 2886627955 | Nostoc sp. PA-18-2419 JC1668 | Isolate | Unclassified |
| 104 | 2913844669 | Nostocales cyanobacterium LEGE 12452 | Isolate | Unclassified |
| 105 | 2913912277 | Desmonostoc muscorum LEGE 12446 | Isolate | Unclassified |
| 106 | 2913939268 | Nostoc sp. LEGE 12447 | Isolate | Unclassified |
| 107 | 642555144 | Nostoc punctiforme PCC 73102 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 93.68 |
| Metatranscriptomes | 0.57 |
| Isolates | 5.75 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.57 |
| Nodule | 0 |
| Rhizoplane | 0 |
| Rhizosphere | 81.03 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0.57 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0065712_10000426 | 3300005290 | Bacteria | 11563 |
| 2 | Ga0065712_10067853 | 3300005290 | Bacteria | 25415 |
| 3 | Ga0065715_10000216 | 3300005293 | Bacteria | 28002 |
| 4 | Ga0065715_10005392 | 3300005293 | Bacteria | 4963 |
| 5 | Ga0065707_10005360 | 3300005295 | Bacteria | 7550 |
| 6 | Ga0070658_10080550 | 3300005327 | Bacteria | 2674 |
| 7 | Ga0070676_10017759 | 3300005328 | Bacteria | 3938 |
| 8 | Ga0070670_100000365 | 3300005331 | Bacteria | 37708 |
| 9 | Ga0070680_100015039 | 3300005336 | Bacteria | 6057 |
| 10 | Ga0070682_100014574 | 3300005337 | Bacteria | 4545 |
| 11 | Ga0070660_100008877 | 3300005339 | Bacteria | 7048 |
| 12 | Ga0070689_100022369 | 3300005340 | Bacteria | 4720 |
| 13 | Ga0070675_100040707 | 3300005354 | Bacteria | 3795 |
| 14 | Ga0070694_100027839 | 3300005444 | Unclassified | 3674 |
| 15 | Ga0070708_100006365 | 3300005445 | Bacteria | 9402 |
| 16 | Ga0070708_100021935 | 3300005445 | Bacteria | 5411 |
| 17 | Ga0070662_100028602 | 3300005457 | Bacteria | 3880 |
| 18 | Ga0070699_100028905 | 3300005518 | Bacteria | 4779 |
| 19 | Ga0070697_100053906 | 3300005536 | Bacteria | 3268 |
| 20 | Ga0070672_100019133 | 3300005543 | Bacteria | 4964 |
| 21 | Ga0070686_100007213 | 3300005544 | Bacteria | 6193 |
| 22 | Ga0070693_100025203 | 3300005547 | Bacteria | 3199 |
| 23 | Ga0070665_100052304 | 3300005548 | Bacteria | 4097 |
| 24 | Ga0068855_100051354 | 3300005563 | Bacteria | 4857 |
| 25 | Ga0068854_100030881 | 3300005578 | Bacteria | 3720 |
| 26 | Ga0068856_100009864 | 3300005614 | Bacteria | 9273 |
| 27 | Ga0081455_10000814 | 3300005937 | Bacteria | 40120 |
| 28 | Ga0081455_10034377 | 3300005937 | Bacteria | 4542 |
| 29 | Ga0081538_10015438 | 3300005981 | Bacteria | 5909 |
| 30 | Ga0081540_1020178 | 3300005983 | Bacteria | 4018 |
| 31 | Ga0075430_100023260 | 3300006846 | Bacteria | 5272 |
| 32 | Ga0075431_100034729 | 3300006847 | Bacteria | 5194 |
| 33 | Ga0075431_100053483 | 3300006847 | Bacteria | 4163 |
| 34 | Ga0075433_10064369 | 3300006852 | Bacteria | 3214 |
| 35 | Ga0075434_100004182 | 3300006871 | Bacteria | 12933 |
| 36 | Ga0075434_100016462 | 3300006871 | Bacteria | 7108 |
| 37 | Ga0075434_100025656 | 3300006871 | Bacteria | 5768 |
| 38 | Ga0075436_100007801 | 3300006914 | Bacteria | 7320 |
| 39 | Ga0075436_100060698 | 3300006914 | Bacteria | 2612 |
| 40 | Ga0075435_100011883 | 3300007076 | Bacteria | 6429 |
| 41 | Ga0075435_100019900 | 3300007076 | Bacteria | 5132 |
| 42 | Ga0114129_10006408 | 3300009147 | Bacteria | 16684 |
| 43 | Ga0105239_10002636 | 3300010375 | Bacteria | 22649 |
| 44 | Ga0105239_10006946 | 3300010375 | Bacteria | 13053 |
| 45 | Ga0105246_10002190 | 3300011119 | Bacteria | 11783 |
| 46 | Ga0157374_10007310 | 3300013296 | Bacteria | 9415 |
| 47 | Ga0163162_10051604 | 3300013306 | Bacteria | 4127 |
| 48 | Ga0157376_10006735 | 3300014969 | Bacteria | 8134 |
| 49 | Ga0207645_10001412 | 3300025907 | Bacteria | 19674 |
| 50 | Ga0207707_10004523 | 3300025912 | Bacteria | 12226 |
| 51 | Ga0207660_10004727 | 3300025917 | Bacteria | 8865 |
| 52 | Ga0207657_10002048 | 3300025919 | Bacteria | 21816 |
| 53 | Ga0207650_10004378 | 3300025925 | Bacteria | 9647 |
| 54 | Ga0207678_10010398 | 3300026067 | Bacteria | 8167 |
| 55 | Ga0207683_10001389 | 3300026121 | Bacteria | 21826 |
| 56 | Ga0265319_1000576 | 3300028563 | Bacteria | 24667 |
| 57 | Ga0265318_10000374 | 3300028577 | Bacteria | 35074 |
| 58 | Ga0265318_10001798 | 3300028577 | Bacteria | 12208 |
| 59 | Ga0265330_10001142 | 3300031235 | Bacteria | 15880 |
| 60 | Ga0265332_10001009 | 3300031238 | Bacteria | 16614 |
| 61 | Ga0265320_10006605 | 3300031240 | Bacteria | 7287 |
| 62 | Ga0265325_10000616 | 3300031241 | Bacteria | 25965 |
| 63 | Ga0265329_10000740 | 3300031242 | Bacteria | 16584 |
| 64 | Ga0265340_10003081 | 3300031247 | Bacteria | 9462 |
| 65 | Ga0265339_10009027 | 3300031249 | Bacteria | 6298 |
| 66 | Ga0265331_10000550 | 3300031250 | Bacteria | 34010 |
| 67 | Ga0265316_10003219 | 3300031344 | Bacteria | 16585 |
| 68 | Ga0265316_10019864 | 3300031344 | Bacteria | 5736 |
| 69 | Ga0307408_100021255 | 3300031548 | Bacteria | 4390 |
| 70 | Ga0265313_10000314 | 3300031595 | Bacteria | 52784 |
| 71 | Ga0265313_10000852 | 3300031595 | Bacteria | 30729 |
| 72 | Ga0316575_10017386 | 3300031665 | Bacteria | 2731 |
| 73 | Ga0265314_10006013 | 3300031711 | Bacteria | 10813 |
| 74 | Ga0265342_10005686 | 3300031712 | Bacteria | 9430 |
| 75 | Ga0307405_10021601 | 3300031731 | Bacteria | 3621 |
| 76 | Ga0307416_100010117 | 3300032002 | Bacteria | 6215 |
| 77 | Ga0307416_100011949 | 3300032002 | Bacteria | 5825 |
| 78 | Ga0307416_100018333 | 3300032002 | Bacteria | 4928 |
| 79 | Ga0307415_100010610 | 3300032126 | Bacteria | 5225 |
| 80 | Ga0316592_1003531 | 3300033524 | Bacteria | 2827 |
| 81 | Ga0373926_0013866 | 3300035083 | Bacteria | 2737 |
| 82 | Ga0373956_0003472 | 3300035119 | Bacteria | 6344 |
| 83 | Ga0373937_0006971 | 3300036401 | Bacteria | 9755 |
| 84 | Ga0400484_08231 | 3300038725 | Bacteria | 2033 |
| 85 | Ga0400484_40601 | 3300038725 | Bacteria | 11726 |
| 86 | Ga0400490_04548 | 3300038726 | Bacteria | 2567 |
| 87 | Ga0400490_25994 | 3300038726 | Bacteria | 23861 |
| 88 | Ga0400490_31883 | 3300038726 | Bacteria | 86884 |
| 89 | Ga0400490_43322 | 3300038726 | Bacteria | 6872 |
| 90 | Ga0400490_49201 | 3300038726 | Bacteria | 6078 |
| 91 | Ga0400490_51606 | 3300038726 | Bacteria | 2204 |
| 92 | Ga0400491_12576 | 3300038727 | Bacteria | 5529 |
| 93 | Ga0400491_25897 | 3300038727 | Bacteria | 7862 |
| 94 | Ga0400485_14718 | 3300038735 | Bacteria | 17871 |
| 95 | Ga0400488_00580 | 3300038741 | Bacteria | 6544 |
| 96 | Ga0400488_00989 | 3300038741 | Bacteria | 5975 |
| 97 | Ga0400486_13055 | 3300038742 | Bacteria | 4145 |
| 98 | Ga0400486_21551 | 3300038742 | Bacteria | 20589 |
| 99 | Ga0400486_29231 | 3300038742 | Bacteria | 9091 |
| 100 | Ga0400483_071935 | 3300039062 | Bacteria | 165886 |
| 101 | Ga0400483_100156 | 3300039062 | Bacteria | 37225 |
| 102 | Ga0400483_246071 | 3300039062 | Bacteria | 11397 |
| 103 | Ga0400489_25682 | 3300039093 | Bacteria | 26714 |
| 104 | Ga0400489_40518 | 3300039093 | Bacteria | 5153 |
| 105 | Ga0400489_46726 | 3300039093 | Bacteria | 23679 |
| 106 | Ga0451577_0000035 | 3300042876 | Bacteria | 373467 |
| 107 | Ga0451577_0001321 | 3300042876 | Bacteria | 33791 |
| 108 | Ga0451577_0017935 | 3300042876 | Bacteria | 6529 |
| 109 | Ga0451577_0060436 | 3300042876 | Bacteria | 3379 |
| 110 | Ga0466969_0010945 | 3300044656 | Bacteria | 4804 |
| 111 | Ga0453683_0000030 | 3300044673 | Bacteria | 242193 |
| 112 | Ga0453683_0000052 | 3300044673 | Bacteria | 199548 |
| 113 | Ga0453683_0000054 | 3300044673 | Bacteria | 194357 |
| 114 | Ga0453683_0000071 | 3300044673 | Bacteria | 158207 |
| 115 | Ga0453683_0000352 | 3300044673 | Bacteria | 55769 |
| 116 | Ga0453683_0000377 | 3300044673 | Bacteria | 53278 |
| 117 | Ga0453683_0000988 | 3300044673 | Bacteria | 26801 |
| 118 | Ga0453683_0006850 | 3300044673 | Bacteria | 7780 |
| 119 | Ga0453683_0010881 | 3300044673 | Bacteria | 6015 |
| 120 | Ga0453683_0021708 | 3300044673 | Bacteria | 4096 |
| 121 | Ga0453684_0000097 | 3300044712 | Bacteria | 377772 |
| 122 | Ga0453684_0000436 | 3300044712 | Bacteria | 170125 |
| 123 | Ga0453684_0000457 | 3300044712 | Bacteria | 163653 |
| 124 | Ga0453684_0000710 | 3300044712 | Bacteria | 117944 |
| 125 | Ga0453684_0001446 | 3300044712 | Bacteria | 67629 |
| 126 | Ga0453684_0002524 | 3300044712 | Bacteria | 44110 |
| 127 | Ga0453684_0002893 | 3300044712 | Bacteria | 40261 |
| 128 | Ga0453684_0009867 | 3300044712 | Bacteria | 16519 |
| 129 | Ga0453684_0011974 | 3300044712 | Bacteria | 14427 |
| 130 | Ga0453684_0012808 | 3300044712 | Bacteria | 13751 |
| 131 | Ga0453684_0017397 | 3300044712 | Bacteria | 11139 |
| 132 | Ga0453684_0052077 | 3300044712 | Bacteria | 5357 |
| 133 | Ga0453684_0076472 | 3300044712 | Bacteria | 4203 |
| 134 | Ga0453684_0087881 | 3300044712 | Bacteria | 3850 |
| 135 | Ga0451576_0000847 | 3300045051 | Bacteria | 59370 |
| 136 | Ga0451576_0001876 | 3300045051 | Bacteria | 33880 |
| 137 | Ga0451576_0005482 | 3300045051 | Bacteria | 15880 |
| 138 | Ga0451576_0078177 | 3300045051 | Bacteria | 3444 |
| 139 | Ga0451576_0092284 | 3300045051 | Bacteria | 3149 |
| 140 | Ga0495580_0003196 | 3300046472 | Bacteria | 14032 |
| 141 | Ga0501034_0076611 | 3300049571 | Bacteria | 3351 |
| 142 | Ga0501071_0062987 | 3300049587 | Bacteria | 2688 |
| 143 | Ga0501075_0007366 | 3300049591 | Bacteria | 7635 |
| 144 | Ga0501080_0069263 | 3300049742 | Bacteria | 3281 |
| 145 | Ga0501081_0000256 | 3300049743 | Bacteria | 27559 |
| 146 | nmdc:mga05p37_25703_c1 | 3300050507 | Bacteria | 7161 |
| 147 | nmdc:mga05p37_31298_c1 | 3300050507 | Bacteria | 6499 |
| 148 | nmdc:mga09592_62724_c1 | 3300050508 | Bacteria | 3145 |
| 149 | nmdc:mga0qj67_18338_c1 | 3300050509 | Bacteria | 5334 |
| 150 | nmdc:mga0qj67_89531_c1 | 3300050509 | Bacteria | 2472 |
| 151 | nmdc:mga08y16_89522_c1 | 3300050511 | Bacteria | 3207 |
| 152 | nmdc:mga0n895_25563_c1 | 3300050512 | Bacteria | 5580 |
| 153 | nmdc:mga0n895_34241_c1 | 3300050512 | Bacteria | 4887 |
| 154 | nmdc:mga0n895_50461_c1 | 3300050512 | Bacteria | 4079 |
| 155 | nmdc:mga08x19_11390_c1 | 3300050514 | Bacteria | 5353 |
| 156 | nmdc:mga08x19_11654_c1 | 3300050514 | Bacteria | 5293 |
| 157 | nmdc:mga0a205_19565_c1 | 3300050515 | Bacteria | 6385 |
| 158 | nmdc:mga0a205_43250_c1 | 3300050515 | Bacteria | 4344 |
| 159 | nmdc:mga0a205_6429_c2 | 3300050515 | Bacteria | 8267 |
| 160 | nmdc:mga0a205_95509_c1 | 3300050515 | Bacteria | 2871 |
| 161 | Ga0500608_000180 | 3300053122 | Bacteria | 25797 |
| 162 | Ga0501082_0017163 | 3300060353 | Bacteria | 6236 |
| 163 | Ga0530510_0031338 | 3300061734 | Bacteria | 3823 |
| 164 | Ga0530510_0040754 | 3300061734 | Bacteria | 3352 |
| 165 | 2831432103 | 2831426010 | Bacteria | 8662725 |
| 166 | 2617912330 | 2617270889 | Bacteria | 9064343 |
| 167 | 2740993578 | 2740891818 | Bacteria | 6711283 |
| 168 | 2848702458 | 2848694841 | Bacteria | 9205737 |
| 169 | 2849667451 | 2849660919 | Bacteria | 8251853 |
| 170 | 2886630308 | 2886627955 | Bacteria | 7618130 |
| 171 | 2913851878 | 2913844669 | Bacteria | 8381711 |
| 172 | 2913920157 | 2913912277 | Bacteria | 9037797 |
| 173 | 2913942721 | 2913939268 | Bacteria | 8559644 |
| 174 | 642604517 | 642555144 | Bacteria | 9059191 |
| 175 | Ga0065712_10000426 | |||
| 176 | Ga0065712_10067853 | |||
| 177 | Ga0065715_10000216 | |||
| 178 | Ga0065715_10005392 | |||
| 179 | Ga0065707_10005360 | |||
| 180 | Ga0070658_10080550 | |||
| 181 | Ga0070676_10017759 | |||
| 182 | Ga0070670_100000365 | |||
| 183 | Ga0070680_100015039 | |||
| 184 | Ga0070682_100014574 | |||
| 185 | Ga0070660_100008877 | |||
| 186 | Ga0070689_100022369 | |||
| 187 | Ga0070675_100040707 | |||
| 188 | Ga0070694_100027839 | |||
| 189 | Ga0070708_100006365 | |||
| 190 | Ga0070708_100021935 | |||
| 191 | Ga0070662_100028602 | |||
| 192 | Ga0070699_100028905 | |||
| 193 | Ga0070697_100053906 | |||
| 194 | Ga0070672_100019133 | |||
| 195 | Ga0070686_100007213 | |||
| 196 | Ga0070693_100025203 | |||
| 197 | Ga0070665_100052304 | |||
| 198 | Ga0068855_100051354 | |||
| 199 | Ga0068854_100030881 | |||
| 200 | Ga0068856_100009864 | |||
| 201 | Ga0081455_10000814 | |||
| 202 | Ga0081455_10034377 | |||
| 203 | Ga0081538_10015438 | |||
| 204 | Ga0081540_1020178 | |||
| 205 | Ga0075430_100023260 | |||
| 206 | Ga0075431_100034729 | |||
| 207 | Ga0075431_100053483 | |||
| 208 | Ga0075433_10064369 | |||
| 209 | Ga0075434_100004182 | |||
| 210 | Ga0075434_100016462 | |||
| 211 | Ga0075434_100025656 | |||
| 212 | Ga0075436_100007801 | |||
| 213 | Ga0075436_100060698 | |||
| 214 | Ga0075435_100011883 | |||
| 215 | Ga0075435_100019900 | |||
| 216 | Ga0114129_10006408 | |||
| 217 | Ga0105239_10002636 | |||
| 218 | Ga0105239_10006946 | |||
| 219 | Ga0105246_10002190 | |||
| 220 | Ga0157374_10007310 | |||
| 221 | Ga0163162_10051604 | |||
| 222 | Ga0157376_10006735 | |||
| 223 | Ga0207645_10001412 | |||
| 224 | Ga0207707_10004523 | |||
| 225 | Ga0207660_10004727 | |||
| 226 | Ga0207657_10002048 | |||
| 227 | Ga0207650_10004378 | |||
| 228 | Ga0207678_10010398 | |||
| 229 | Ga0207683_10001389 | |||
| 230 | Ga0265319_1000576 | |||
| 231 | Ga0265318_10000374 | |||
| 232 | Ga0265318_10001798 | |||
| 233 | Ga0265330_10001142 | |||
| 234 | Ga0265332_10001009 | |||
| 235 | Ga0265320_10006605 | |||
| 236 | Ga0265325_10000616 | |||
| 237 | Ga0265329_10000740 | |||
| 238 | Ga0265340_10003081 | |||
| 239 | Ga0265339_10009027 | |||
| 240 | Ga0265331_10000550 | |||
| 241 | Ga0265316_10003219 | |||
| 242 | Ga0265316_10019864 | |||
| 243 | Ga0307408_100021255 | |||
| 244 | Ga0265313_10000314 | |||
| 245 | Ga0265313_10000852 | |||
| 246 | Ga0316575_10017386 | |||
| 247 | Ga0265314_10006013 | |||
| 248 | Ga0265342_10005686 | |||
| 249 | Ga0307405_10021601 | |||
| 250 | Ga0307416_100010117 | |||
| 251 | Ga0307416_100011949 | |||
| 252 | Ga0307416_100018333 | |||
| 253 | Ga0307415_100010610 | |||
| 254 | Ga0316592_1003531 | |||
| 255 | Ga0373926_0013866 | |||
| 256 | Ga0373956_0003472 | |||
| 257 | Ga0373937_0006971 | |||
| 258 | Ga0400484_08231 | |||
| 259 | Ga0400484_40601 | |||
| 260 | Ga0400490_04548 | |||
| 261 | Ga0400490_25994 | |||
| 262 | Ga0400490_31883 | |||
| 263 | Ga0400490_43322 | |||
| 264 | Ga0400490_49201 | |||
| 265 | Ga0400490_51606 | |||
| 266 | Ga0400491_12576 | |||
| 267 | Ga0400491_25897 | |||
| 268 | Ga0400485_14718 | |||
| 269 | Ga0400488_00580 | |||
| 270 | Ga0400488_00989 | |||
| 271 | Ga0400486_13055 | |||
| 272 | Ga0400486_21551 | |||
| 273 | Ga0400486_29231 | |||
| 274 | Ga0400483_071935 | |||
| 275 | Ga0400483_100156 | |||
| 276 | Ga0400483_246071 | |||
| 277 | Ga0400489_25682 | |||
| 278 | Ga0400489_40518 | |||
| 279 | Ga0400489_46726 | |||
| 280 | Ga0451577_0000035 | |||
| 281 | Ga0451577_0001321 | |||
| 282 | Ga0451577_0017935 | |||
| 283 | Ga0451577_0060436 | |||
| 284 | Ga0466969_0010945 | |||
| 285 | Ga0453683_0000030 | |||
| 286 | Ga0453683_0000052 | |||
| 287 | Ga0453683_0000054 | |||
| 288 | Ga0453683_0000071 | |||
| 289 | Ga0453683_0000352 | |||
| 290 | Ga0453683_0000377 | |||
| 291 | Ga0453683_0000988 | |||
| 292 | Ga0453683_0006850 | |||
| 293 | Ga0453683_0010881 | |||
| 294 | Ga0453683_0021708 | |||
| 295 | Ga0453684_0000097 | |||
| 296 | Ga0453684_0000436 | |||
| 297 | Ga0453684_0000457 | |||
| 298 | Ga0453684_0000710 | |||
| 299 | Ga0453684_0001446 | |||
| 300 | Ga0453684_0002524 | |||
| 301 | Ga0453684_0002893 | |||
| 302 | Ga0453684_0009867 | |||
| 303 | Ga0453684_0011974 | |||
| 304 | Ga0453684_0012808 | |||
| 305 | Ga0453684_0017397 | |||
| 306 | Ga0453684_0052077 | |||
| 307 | Ga0453684_0076472 | |||
| 308 | Ga0453684_0087881 | |||
| 309 | Ga0451576_0000847 | |||
| 310 | Ga0451576_0001876 | |||
| 311 | Ga0451576_0005482 | |||
| 312 | Ga0451576_0078177 | |||
| 313 | Ga0451576_0092284 | |||
| 314 | Ga0495580_0003196 | |||
| 315 | Ga0501034_0076611 | |||
| 316 | Ga0501071_0062987 | |||
| 317 | Ga0501075_0007366 | |||
| 318 | Ga0501080_0069263 | |||
| 319 | Ga0501081_0000256 | |||
| 320 | nmdc:mga05p37_25703_c1 | |||
| 321 | nmdc:mga05p37_31298_c1 | |||
| 322 | nmdc:mga09592_62724_c1 | |||
| 323 | nmdc:mga0qj67_18338_c1 | |||
| 324 | nmdc:mga0qj67_89531_c1 | |||
| 325 | nmdc:mga08y16_89522_c1 | |||
| 326 | nmdc:mga0n895_25563_c1 | |||
| 327 | nmdc:mga0n895_34241_c1 | |||
| 328 | nmdc:mga0n895_50461_c1 | |||
| 329 | nmdc:mga08x19_11390_c1 | |||
| 330 | nmdc:mga08x19_11654_c1 | |||
| 331 | nmdc:mga0a205_19565_c1 | |||
| 332 | nmdc:mga0a205_43250_c1 | |||
| 333 | nmdc:mga0a205_6429_c2 | |||
| 334 | nmdc:mga0a205_95509_c1 | |||
| 335 | Ga0500608_000180 | |||
| 336 | Ga0501082_0017163 | |||
| 337 | Ga0530510_0031338 | |||
| 338 | Ga0530510_0040754 | |||
| 339 | 2831432103 | |||
| 340 | 2617912330 | |||
| 341 | 2740993578 | |||
| 342 | 2848702458 | |||
| 343 | 2849667451 | |||
| 344 | 2886630308 | |||
| 345 | 2913851878 | |||
| 346 | 2913920157 | |||
| 347 | 2913942721 | |||
| 348 | 642604517 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3hvz-assembly3.cif.gz_E | crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a | 0.991 | 373 | 433 |
| 3hvz-assembly3.cif.gz_E | crystal structure of the tgs domain of the clolep_03100 protein from clostridium leptum, northeast structural genomics consortium target qlr13a | 0.9599 | 373 | 433 |
| 7doj-assembly1.cif.gz_A | solution structure of tgs domain of the mycobacterium tuberculosis rel protein | 0.9347 | 371 | 432 |
| 1vj7-assembly2.cif.gz_B | crystal structure of the bifunctional catalytic fragment of relseq, the rela/spot homolog from streptococcus equisimilis. | 0.9278 | 4 | 339 |
| 7oiw-assembly1.cif.gz_A | structure of s. aureus rel catalytic domains in complex with pppgpp | 0.9199 | 4 | 342 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3hvzC00 | Alpha Beta;Roll;Ubiquitin-like (UB roll);Beta-grasp domain | 0.9887 | 372 | 433 | 3.10.20.30 |
| af_P0AG20_208_341_3.30.460.10 | Alpha Beta;2-Layer Sandwich;Beta Polymerase; domain 2;Beta Polymerase, domain 2 | 0.9788 | 198 | 327 | 3.30.460.10 |
| af_Q2FXU1_3_195_1.10.3210.10 | Mainly Alpha;Orthogonal Bundle;Hypothetical protein af1432;Hypothetical protein af1432 | 0.9721 | 5 | 192 | 1.10.3210.10 |
| af_P0AG20_664_743_3.30.70.260 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain | 0.9718 | 627 | 703 | 3.30.70.260 |
| af_P0AG24_623_702_3.30.70.260 | Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain | 0.9627 | 623 | 702 | 3.30.70.260 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5S9MHQ5-F1-model_v4 | ACT domain-containing protein | 0.9766 | 629 | 701 |
|
| AF-X1J9L3-F1-model_v4 | TGS domain-containing protein | 0.9753 | 371 | 432 |
GO:0000166
GO:0004829 GO:0006435 |
| AF-A0A3M1AKW7-F1-model_v4 | Bifunctional (P)ppGpp synthetase/guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase | 0.9661 | 7 | 106 |
GO:0016787
|
| AF-A0A3N5MX56-F1-model_v4 | ACT domain-containing protein | 0.9596 | 627 | 702 |
|
| AF-A0A7S3DPH0-F1-model_v4 | RelA/SpoT domain-containing protein | 0.9574 | 171 | 333 |
GO:0005886
GO:0015969 |