F265361

General Info

Members Datasets Scaffolds Average Seq Length
174 115 348 347

Family's Representative Sequence

Representative Sequence 3300049822|Ga0501035_0173899|Ga0501035_0173899_529_1773
Length 414
Sequence VVVGAGRLFEQARPGTGGALQNRLGQLGGHRTSPYARIECVVCPEQARTPVRQSGAGAPQARDRHRAKIRAMPATTAADSLLVRAASGRPGPHPPVWFMRQAGRSLPEYRALRADTPMLDACRDPELITEITLQPVRRHGVDAAIFFSDIVVPLVAIGVGVELVAGVGPVVEHPIRAAADLDALRPLEASDVPYVAEAVRSLAATLDGTPLIGFTGAPYTLASYLIEGGPSRDHARTKAMMHGQPELWNDLLGRLAVIAREFLRVQIAAGASAVQVFDSWAGSLSAADYERYVLPHSRAVLEPLANAGVPRIHFGVGTGEFLGLMRAAGADVVGVDWRIGLDEAARRIGPGAVVQGNLDPALLLADWPVIEREVRRIVAEGRAAAGHIFNLGHGVLPATDPAVLTRVVELVHSL

Samples

Sample ID Description Type Environment
1 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
25 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
30 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
31 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
32 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
33 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
40 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
41 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
70 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
71 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
72 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
73 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
74 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
75 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
76 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
77 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
78 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
79 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
80 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
81 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
82 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
83 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
84 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
85 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
86 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
87 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
88 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
89 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
90 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
91 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
92 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
93 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
94 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
100 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
101 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
102 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
103 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
105 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
106 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
107 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
108 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
109 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
110 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
111 2795385470 Labedaea rhizosphaerae DSM 45361 Isolate Rhizosphere
112 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
113 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
114 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
115 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.4
Metatranscriptomes 0.57
Isolates 4.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 8.05
Rhizosphere 84.48
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501035_0173899 3300049822 Bacteria 1859
2 Ga0070658_10024707 3300005327 Bacteria 4818
3 Ga0070683_100092759 3300005329 Bacteria 2836
4 Ga0070683_100104509 3300005329 Bacteria 2669
5 Ga0070666_10024369 3300005335 Bacteria 3941
6 Ga0070682_100039053 3300005337 Bacteria 2915
7 Ga0070671_100293661 3300005355 Bacteria 1383
8 Ga0070659_100030837 3300005366 Bacteria 4150
9 Ga0070667_100038300 3300005367 Bacteria 4020
10 Ga0070667_100053570 3300005367 Bacteria 3405
11 Ga0070714_100004807 3300005435 Bacteria 10239
12 Ga0070713_100000050 3300005436 Bacteria 73746
13 Ga0070713_100214018 3300005436 Bacteria 1746
14 Ga0070710_10000055 3300005437 Bacteria 51746
15 Ga0070711_100001215 3300005439 Bacteria 13900
16 Ga0070705_100104345 3300005440 Bacteria 1797
17 Ga0070684_100000859 3300005535 Bacteria 21453
18 Ga0070665_100000583 3300005548 Bacteria 50878
19 Ga0070665_100053449 3300005548 Bacteria 4051
20 Ga0068855_100006637 3300005563 Bacteria 14053
21 Ga0068855_100047212 3300005563 Bacteria 5088
22 Ga0068855_100189490 3300005563 Bacteria 2321
23 Ga0068856_100019867 3300005614 Bacteria 6522
24 Ga0068856_100033491 3300005614 Bacteria 5031
25 Ga0068856_100044114 3300005614 Bacteria 4387
26 Ga0070702_100048049 3300005615 Bacteria 2427
27 Ga0068852_100098086 3300005616 Bacteria 2638
28 Ga0068859_100034613 3300005617 Bacteria 5069
29 Ga0068863_100000675 3300005841 Bacteria 34506
30 Ga0068858_100012432 3300005842 Bacteria 8026
31 Ga0068858_100050508 3300005842 Bacteria 3849
32 Ga0068860_100000214 3300005843 Bacteria 90752
33 Ga0081539_10000196 3300005985 Bacteria 140882
34 Ga0070716_100000399 3300006173 Bacteria 17806
35 Ga0070712_100004519 3300006175 Bacteria 8590
36 Ga0097620_100034613 3300006931 Bacteria 5069
37 Ga0105240_10056302 3300009093 Bacteria 4921
38 Ga0105240_10060887 3300009093 Bacteria 4705
39 Ga0105240_10090726 3300009093 Bacteria 3734
40 Ga0105245_10007388 3300009098 Bacteria 9622
41 Ga0105245_10067883 3300009098 Bacteria 3230
42 Ga0105247_10030145 3300009101 Bacteria 3288
43 Ga0105248_10042849 3300009177 Bacteria 5075
44 Ga0105249_10192913 3300009553 Bacteria 1989
45 Ga0105239_10003082 3300010375 Bacteria 20711
46 Ga0105239_10010372 3300010375 Bacteria 10429
47 Ga0105239_10497323 3300010375 Bacteria 1386
48 Ga0157374_10078369 3300013296 Bacteria 3129
49 Ga0163162_10133720 3300013306 Bacteria 2590
50 Ga0157372_10000022 3300013307 Bacteria 206038
51 Ga0157372_10013227 3300013307 Bacteria 8807
52 Ga0157375_10006488 3300013308 Bacteria 10188
53 Ga0157375_10352611 3300013308 Bacteria 1637
54 Ga0163163_10031659 3300014325 Bacteria 5106
55 Ga0163163_10058255 3300014325 Bacteria 3819
56 Ga0163163_10161715 3300014325 Bacteria 2284
57 Ga0163163_10240964 3300014325 Bacteria 1858
58 Ga0157379_10149955 3300014968 Bacteria 2103
59 Ga0206354_10304421 3300020081 Bacteria 1392
60 Ga0207692_10000027 3300025898 Bacteria 50108
61 Ga0207710_10023056 3300025900 Bacteria 2673
62 Ga0207680_10011618 3300025903 Bacteria 4455
63 Ga0207647_10119168 3300025904 Bacteria 1557
64 Ga0207685_10066809 3300025905 Bacteria 1444
65 Ga0207699_10000102 3300025906 Bacteria 61110
66 Ga0207705_10120072 3300025909 Bacteria 1950
67 Ga0207654_10070574 3300025911 Bacteria 2074
68 Ga0207695_10127847 3300025913 Bacteria 2501
69 Ga0207671_10143062 3300025914 Bacteria 1844
70 Ga0207693_10000578 3300025915 Bacteria 32784
71 Ga0207693_10046673 3300025915 Bacteria 3403
72 Ga0207663_10116145 3300025916 Bacteria 1824
73 Ga0207646_10164583 3300025922 Bacteria 2002
74 Ga0207659_10187617 3300025926 Bacteria 1643
75 Ga0207700_10050066 3300025928 Bacteria 3111
76 Ga0207664_10000032 3300025929 Bacteria 179232
77 Ga0207664_10001496 3300025929 Bacteria 15320
78 Ga0207644_10236996 3300025931 Bacteria 1452
79 Ga0207665_10003012 3300025939 Bacteria 11308
80 Ga0207667_10097875 3300025949 Bacteria 3028
81 Ga0207677_10316960 3300026023 Bacteria 1294
82 Ga0207703_10034916 3300026035 Bacteria 3994
83 Ga0207708_10000009 3300026075 Bacteria 235909
84 Ga0207702_10048679 3300026078 Bacteria 3575
85 Ga0207702_10209704 3300026078 Bacteria 1811
86 Ga0207702_10279444 3300026078 Bacteria 1578
87 Ga0207641_10002292 3300026088 Bacteria 17819
88 Ga0207676_10114230 3300026095 Bacteria 2265
89 Ga0207698_10174230 3300026142 Bacteria 1898
90 Ga0207698_10429626 3300026142 Bacteria 1270
91 Ga0268266_10149192 3300028379 Bacteria 2106
92 Ga0268264_10000027 3300028381 Bacteria 440852
93 Ga0307513_10065726 3300031456 Bacteria 3815
94 Ga0316583_10010226 3300032133 Bacteria 3381
95 Ga0373955_0096408 3300035172 Bacteria 1692
96 Ga0316574_0063072 3300035398 Bacteria 2330
97 Ga0316574_0123392 3300035398 Bacteria 1664
98 Ga0436364_1190074 3300037853 Bacteria 7189
99 Ga0400485_22316 3300038735 Bacteria 100302
100 Ga0400488_00406 3300038741 Bacteria 2887
101 Ga0400486_28906 3300038742 Bacteria 68419
102 Ga0451577_0344768 3300042876 Bacteria 1351
103 Ga0466972_0024348 3300044658 Bacteria 3004
104 Ga0466972_0078262 3300044658 Bacteria 1575
105 Ga0466966_0030836 3300044684 Bacteria 3478
106 Ga0466966_0034347 3300044684 Bacteria 3279
107 Ga0466966_0046257 3300044684 Bacteria 2779
108 Ga0466966_0052341 3300044684 Bacteria 2594
109 Ga0466961_0016495 3300044693 Bacteria 4745
110 Ga0466961_0077191 3300044693 Bacteria 2110
111 Ga0466961_0105067 3300044693 Bacteria 1778
112 Ga0466963_0014932 3300044694 Bacteria 4800
113 Ga0466963_0021559 3300044694 Bacteria 4067
114 Ga0466963_0029139 3300044694 Bacteria 3550
115 Ga0466963_0043301 3300044694 Bacteria 2959
116 Ga0466963_0071245 3300044694 Bacteria 2339
117 Ga0466964_0009837 3300044706 Bacteria 3603
118 Ga0466964_0026878 3300044706 Bacteria 2255
119 Ga0466971_0002991 3300044719 Bacteria 7182
120 Ga0466971_0121986 3300044719 Bacteria 1207
121 Ga0466968_0046938 3300044735 Bacteria 1836
122 Ga0466970_0002688 3300044765 Bacteria 8581
123 Ga0466970_0012321 3300044765 Bacteria 4370
124 Ga0466970_0086406 3300044765 Bacteria 1700
125 Ga0466957_0007523 3300044842 Bacteria 6154
126 Ga0466957_0024300 3300044842 Bacteria 3585
127 Ga0466957_0111502 3300044842 Bacteria 1735
128 Ga0466960_0115907 3300044901 Bacteria 1397
129 Ga0466959_0012690 3300045049 Bacteria 6096
130 Ga0466959_0023526 3300045049 Bacteria 4559
131 Ga0466959_0054923 3300045049 Bacteria 2909
132 Ga0466959_0132826 3300045049 Bacteria 1763
133 Ga0466959_0273895 3300045049 Bacteria 1160
134 Ga0451576_0492825 3300045051 Bacteria 1287
135 Ga0466958_0036149 3300045836 Bacteria 2955
136 Ga0466958_0044621 3300045836 Bacteria 2672
137 Ga0466958_0069078 3300045836 Bacteria 2160
138 Ga0466967_0046614 3300045976 Bacteria 3775
139 Ga0466967_0300049 3300045976 Bacteria 1545
140 Ga0495582_0066910 3300046473 Bacteria 1985
141 Ga0496102_0000095 3300048905 Bacteria 124981
142 Ga0496102_0032297 3300048905 Bacteria 4703
143 Ga0496102_0621097 3300048905 Bacteria 1004
144 Ga0496103_0000042 3300048906 Bacteria 168701
145 Ga0496104_0034969 3300048907 Bacteria 4689
146 Ga0496108_0009111 3300048911 Bacteria 8035
147 Ga0496108_0013842 3300048911 Bacteria 6580
148 Ga0496108_0377151 3300048911 Bacteria 1238
149 Ga0496109_0008745 3300048912 Bacteria 8621
150 Ga0496110_0008067 3300048913 Bacteria 8453
151 Ga0496110_0117561 3300048913 Bacteria 2394
152 Ga0496110_0120987 3300048913 Bacteria 2358
153 Ga0496110_0183325 3300048913 Bacteria 1901
154 Ga0496112_0133619 3300048915 Bacteria 2452
155 Ga0496118_0023197 3300048921 Bacteria 5397
156 Ga0496118_0136909 3300048921 Bacteria 1561
157 Ga0496119_0001318 3300048922 Bacteria 30496
158 Ga0496119_0021686 3300048922 Bacteria 4630
159 Ga0496119_0030021 3300048922 Bacteria 3672
160 Ga0496120_0007873 3300048923 Bacteria 7850
161 Ga0501034_0028832 3300049571 Bacteria 5647
162 Ga0501036_0040657 3300049572 Bacteria 3933
163 Ga0501047_0021273 3300049581 Bacteria 6227
164 Ga0501048_0000310 3300049582 Bacteria 33245
165 Ga0501044_0010839 3300049823 Bacteria 9889
166 Ga0501044_0067705 3300049823 Bacteria 3638
167 Ga0466962_0016857 3300061719 Bacteria 3520
168 2523387587 2523231044 Bacteria 6434991
169 2676482003 2675903059 Bacteria 8644972
170 2795786644 2795385470 Bacteria 8317180
171 2837270465 2837268691 Bacteria 7850704
172 2866612836 2866612099 Bacteria 7543886
173 2887444727 2887443736 Bacteria 4426037
174 2906802347 2906799679 Bacteria 4031749
175 Ga0501035_0173899
176 Ga0070658_10024707
177 Ga0070683_100092759
178 Ga0070683_100104509
179 Ga0070666_10024369
180 Ga0070682_100039053
181 Ga0070671_100293661
182 Ga0070659_100030837
183 Ga0070667_100038300
184 Ga0070667_100053570
185 Ga0070714_100004807
186 Ga0070713_100000050
187 Ga0070713_100214018
188 Ga0070710_10000055
189 Ga0070711_100001215
190 Ga0070705_100104345
191 Ga0070684_100000859
192 Ga0070665_100000583
193 Ga0070665_100053449
194 Ga0068855_100006637
195 Ga0068855_100047212
196 Ga0068855_100189490
197 Ga0068856_100019867
198 Ga0068856_100033491
199 Ga0068856_100044114
200 Ga0070702_100048049
201 Ga0068852_100098086
202 Ga0068859_100034613
203 Ga0068863_100000675
204 Ga0068858_100012432
205 Ga0068858_100050508
206 Ga0068860_100000214
207 Ga0081539_10000196
208 Ga0070716_100000399
209 Ga0070712_100004519
210 Ga0097620_100034613
211 Ga0105240_10056302
212 Ga0105240_10060887
213 Ga0105240_10090726
214 Ga0105245_10007388
215 Ga0105245_10067883
216 Ga0105247_10030145
217 Ga0105248_10042849
218 Ga0105249_10192913
219 Ga0105239_10003082
220 Ga0105239_10010372
221 Ga0105239_10497323
222 Ga0157374_10078369
223 Ga0163162_10133720
224 Ga0157372_10000022
225 Ga0157372_10013227
226 Ga0157375_10006488
227 Ga0157375_10352611
228 Ga0163163_10031659
229 Ga0163163_10058255
230 Ga0163163_10161715
231 Ga0163163_10240964
232 Ga0157379_10149955
233 Ga0206354_10304421
234 Ga0207692_10000027
235 Ga0207710_10023056
236 Ga0207680_10011618
237 Ga0207647_10119168
238 Ga0207685_10066809
239 Ga0207699_10000102
240 Ga0207705_10120072
241 Ga0207654_10070574
242 Ga0207695_10127847
243 Ga0207671_10143062
244 Ga0207693_10000578
245 Ga0207693_10046673
246 Ga0207663_10116145
247 Ga0207646_10164583
248 Ga0207659_10187617
249 Ga0207700_10050066
250 Ga0207664_10000032
251 Ga0207664_10001496
252 Ga0207644_10236996
253 Ga0207665_10003012
254 Ga0207667_10097875
255 Ga0207677_10316960
256 Ga0207703_10034916
257 Ga0207708_10000009
258 Ga0207702_10048679
259 Ga0207702_10209704
260 Ga0207702_10279444
261 Ga0207641_10002292
262 Ga0207676_10114230
263 Ga0207698_10174230
264 Ga0207698_10429626
265 Ga0268266_10149192
266 Ga0268264_10000027
267 Ga0307513_10065726
268 Ga0316583_10010226
269 Ga0373955_0096408
270 Ga0316574_0063072
271 Ga0316574_0123392
272 Ga0436364_1190074
273 Ga0400485_22316
274 Ga0400488_00406
275 Ga0400486_28906
276 Ga0451577_0344768
277 Ga0466972_0024348
278 Ga0466972_0078262
279 Ga0466966_0030836
280 Ga0466966_0034347
281 Ga0466966_0046257
282 Ga0466966_0052341
283 Ga0466961_0016495
284 Ga0466961_0077191
285 Ga0466961_0105067
286 Ga0466963_0014932
287 Ga0466963_0021559
288 Ga0466963_0029139
289 Ga0466963_0043301
290 Ga0466963_0071245
291 Ga0466964_0009837
292 Ga0466964_0026878
293 Ga0466971_0002991
294 Ga0466971_0121986
295 Ga0466968_0046938
296 Ga0466970_0002688
297 Ga0466970_0012321
298 Ga0466970_0086406
299 Ga0466957_0007523
300 Ga0466957_0024300
301 Ga0466957_0111502
302 Ga0466960_0115907
303 Ga0466959_0012690
304 Ga0466959_0023526
305 Ga0466959_0054923
306 Ga0466959_0132826
307 Ga0466959_0273895
308 Ga0451576_0492825
309 Ga0466958_0036149
310 Ga0466958_0044621
311 Ga0466958_0069078
312 Ga0466967_0046614
313 Ga0466967_0300049
314 Ga0495582_0066910
315 Ga0496102_0000095
316 Ga0496102_0032297
317 Ga0496102_0621097
318 Ga0496103_0000042
319 Ga0496104_0034969
320 Ga0496108_0009111
321 Ga0496108_0013842
322 Ga0496108_0377151
323 Ga0496109_0008745
324 Ga0496110_0008067
325 Ga0496110_0117561
326 Ga0496110_0120987
327 Ga0496110_0183325
328 Ga0496112_0133619
329 Ga0496118_0023197
330 Ga0496118_0136909
331 Ga0496119_0001318
332 Ga0496119_0021686
333 Ga0496119_0030021
334 Ga0496120_0007873
335 Ga0501034_0028832
336 Ga0501036_0040657
337 Ga0501047_0021273
338 Ga0501048_0000310
339 Ga0501044_0010839
340 Ga0501044_0067705
341 Ga0466962_0016857
342 2523387587
343 2676482003
344 2795786644
345 2837270465
346 2866612836
347 2887444727
348 2906802347

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01208

URO-D

Uroporphyrinogen decarboxylase (URO-D)

77

414

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
3cyv-assembly1.cif.gz_A-2 crystal structure of uroporphyrinogen decarboxylase from shigella flexineri: new insights into its catalytic mechanism 0.9555 8 339
2inf-assembly2.cif.gz_D crystal structure of uroporphyrinogen decarboxylase from bacillus subtilis 0.9548 8 340
4zr8-assembly1.cif.gz_B structure of uroporphyrinogen decarboxylase from acinetobacter baumannii 0.948 8 340
1r3s-assembly1.cif.gz_A uroporphyrinogen decarboxylase single mutant d86g in complex with coproporphyrinogen-i 0.9464 8 339
1r3q-assembly1.cif.gz_A uroporphyrinogen decarboxylase in complex with coproporphyrinogen-i 0.9461 8 339
ID Description Score Start End Superfamily
af_P9WFE1_2_357_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9759 7 340 3.20.20.210
af_C6TEE8_35_387_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9593 2 340 3.20.20.210
af_P9WFE1_2_357_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9562 7 340 3.20.20.210
2infD00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9548 8 340 3.20.20.210
af_C6TEE8_35_387_3.20.20.210 Alpha Beta;Alpha-Beta Barrel;TIM Barrel; 0.9538 2 340 3.20.20.210
ID Description Score Start End GO Terms
AF-A0A7X0RGV8-F1-model_v4 Uroporphyrinogen decarboxylase (UPD) (URO-D) (EC 4.1.1.37) 0.9919 5 340 GO:0004853
GO:0005829
GO:0006782
AF-A0A6L7F450-F1-model_v4 Uroporphyrinogen decarboxylase (UPD) (URO-D) (EC 4.1.1.37) 0.9916 5 340 GO:0004853
GO:0005829
GO:0006782
AF-D9W2L2-F1-model_v4 uroporphyrinogen decarboxylase (EC 4.1.1.37) 0.9914 4 246 GO:0004853
GO:0005829
GO:0006782
AF-A0A2M9BD92-F1-model_v4 Uroporphyrinogen decarboxylase (UPD) (URO-D) (EC 4.1.1.37) 0.9895 7 340 GO:0004853
GO:0005829
GO:0006782
AF-A0A5Q6S0R6-F1-model_v4 Uroporphyrinogen decarboxylase (UPD) (URO-D) (EC 4.1.1.37) 0.9894 7 340 GO:0004853
GO:0005829
GO:0006782

Map