F261758

General Info

Members Datasets Scaffolds Average Seq Length
173 141 346 304

Family's Representative Sequence

Representative Sequence 3300000546|LJNas_1001767|LJNas_10017672
Length 319
Sequence MNTLRQAVREYLAMRRSLGFKLREGDKTLLDFAAFMERRRASYITQALALAWAQRPTNVQPVRWASRLTYVRQFARHRSATDPRTQIPAPGLLPFKPKRARPYLYSADEVKRLLSATLNTPLSPYCNDRKGCALLPRVYYCLFGLLSVSGLRLAEARNLKLQDVDLKAGVLTIRGAKFGKDRLVCLHASTCKVLADYIARRQRHWAGRPVSSYLFVSSWGNRLDAAQIHRAFYAVSRRIGLRGTGDSHGPRLHDFRHRFATTTLVNWYRSNQEPERRLPILSAFLGHVHVADTQWYLSASPELMREAMRRLEHRWENQT

Samples

Sample ID Description Type Environment
1 3300000546 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
20 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
21 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
22 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
23 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
24 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
25 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
26 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
27 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
28 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
31 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
34 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
35 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
36 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
37 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
48 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
49 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
51 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
52 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
53 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
54 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
55 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
56 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
57 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
58 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300033547 Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 Metagenome Unclassified
61 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
62 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
63 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
64 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
65 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
66 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
67 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
68 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
72 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
73 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
74 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
79 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
80 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
81 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
82 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
83 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
84 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
85 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
86 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
87 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
88 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
89 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
90 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
91 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
92 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
95 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
96 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
97 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
100 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
101 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
102 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
103 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
104 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
105 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
106 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
107 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
108 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
109 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
110 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
113 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
114 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
115 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
116 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
119 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
120 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
121 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
122 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
123 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
126 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
127 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
133 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
136 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
137 2515154189 Paraburkholderia nodosa DSM 21604 Isolate Unclassified
138 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
139 2883087390 Paraburkholderia guartelaensis CNPSo 3008 Isolate Unclassified
140 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
141 2958115193 Mesorhizobium sp. M00.F.Ca.ET.217.01.1.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 94.22
Metatranscriptomes 1.73
Isolates 4.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 1.73
Rhizoplane 10.4
Rhizosphere 79.77
Stem 0
Stem Tuber 0
Unclassified 9.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJNas_1001767 3300000546 Bacteria 2873
2 Ga0070658_10036482 3300005327 Bacteria 3962
3 Ga0070670_100226077 3300005331 Bacteria 1628
4 Ga0070666_10008874 3300005335 Bacteria 6250
5 Ga0068868_100141320 3300005338 Unclassified 1976
6 Ga0070675_100345148 3300005354 Bacteria 1319
7 Ga0070667_100027665 3300005367 Bacteria 4718
8 Ga0070714_100245633 3300005435 Bacteria 1653
9 Ga0070710_10048701 3300005437 Bacteria 2368
10 Ga0070700_100025004 3300005441 Bacteria 3513
11 Ga0070708_100056627 3300005445 Bacteria 3488
12 Ga0070708_100060634 3300005445 Bacteria 3377
13 Ga0070678_100129164 3300005456 Bacteria 2005
14 Ga0070706_100022199 3300005467 Bacteria 5844
15 Ga0070706_100148802 3300005467 Bacteria 2186
16 Ga0070698_100229836 3300005471 Bacteria 1788
17 Ga0070698_100359765 3300005471 Bacteria 1387
18 Ga0070699_100030469 3300005518 Bacteria 4657
19 Ga0070699_100076589 3300005518 Bacteria 2912
20 Ga0070697_100000973 3300005536 Bacteria 21624
21 Ga0070717_10019404 3300006028 Bacteria 5330
22 Ga0070717_10069425 3300006028 Bacteria 2935
23 Ga0075428_100065566 3300006844 Bacteria 3977
24 Ga0075435_100055809 3300007076 Bacteria 3191
25 Ga0099794_10001690 3300007265 Bacteria 7799
26 Ga0099794_10009221 3300007265 Bacteria 4137
27 Ga0105245_10210128 3300009098 Bacteria 1873
28 Ga0105247_10082655 3300009101 Unclassified 2027
29 Ga0114129_10834627 3300009147 Bacteria 1173
30 Ga0105248_10091384 3300009177 Bacteria 3428
31 Ga0105237_10045300 3300009545 Unclassified 4427
32 Ga0105237_10072278 3300009545 Bacteria 3443
33 Ga0105238_10175299 3300009551 Bacteria 2121
34 Ga0105249_10044245 3300009553 Bacteria 4049
35 Ga0099796_10051115 3300010159 Bacteria 1435
36 Ga0105239_10469477 3300010375 Unclassified 1429
37 Ga0157378_10274965 3300013297 Bacteria 1621
38 Ga0163162_10225980 3300013306 Bacteria 2001
39 Ga0157375_10004195 3300013308 Bacteria 12512
40 Ga0163163_10020336 3300014325 Bacteria 6249
41 Ga0163161_10035802 3300017792 Bacteria 3554
42 Ga0213872_10045797 3300021361 Unclassified 1991
43 Ga0213874_10023778 3300021377 Bacteria 1713
44 Ga0207699_10053793 3300025906 Bacteria 2389
45 Ga0207684_10021459 3300025910 Bacteria 5514
46 Ga0207671_10028372 3300025914 Unclassified 4182
47 Ga0207711_10113797 3300025941 Bacteria 2409
48 Ga0207658_10028560 3300025986 Bacteria 3929
49 Ga0207678_10018986 3300026067 Bacteria 6039
50 Ga0207708_10034409 3300026075 Bacteria 3854
51 Ga0207648_10213995 3300026089 Bacteria 1711
52 Ga0207698_10057540 3300026142 Unclassified 3009
53 Ga0209588_1004417 3300027671 Bacteria 3961
54 Ga0209588_1011808 3300027671 Bacteria 2644
55 Ga0265334_10020945 3300028573 Bacteria 2674
56 Ga0307515_10081338 3300028794 Bacteria 4209
57 Ga0265760_10003145 3300031090 Bacteria 4827
58 Ga0265331_10016017 3300031250 Unclassified 3943
59 Ga0307509_10065495 3300031507 Bacteria 3815
60 Ga0265313_10097781 3300031595 Bacteria 1307
61 Ga0316575_10023434 3300031665 Bacteria 2386
62 Ga0316579_10037321 3300031691 Bacteria 2244
63 Ga0316579_10066713 3300031691 Bacteria 1699
64 Ga0316578_10005258 3300031728 Bacteria 6249
65 Ga0316577_10051479 3300031733 Bacteria 2297
66 Ga0316583_10018711 3300032133 Bacteria 2487
67 Ga0316592_1002672 3300033524 Bacteria 3109
68 Ga0316596_1009413 3300033541 Bacteria 2344
69 Ga0316212_1006941 3300033547 Bacteria 1639
70 Ga0373936_0164964 3300035113 Unclassified 966
71 Ga0373954_0216895 3300035118 Unclassified 941
72 Ga0373956_0012957 3300035119 Unclassified 3464
73 Ga0316574_0091321 3300035398 Bacteria 1941
74 Ga0316574_0162374 3300035398 Bacteria 1438
75 Ga0373927_0029263 3300035695 Unclassified 3589
76 Ga0373933_0147124 3300035724 Unclassified 1490
77 Ga0373937_0170134 3300036401 Unclassified 2044
78 Ga0316582_0044297 3300036647 Bacteria 2796
79 Ga0373925_0453802 3300037068 Bacteria 1050
80 Ga0395905_0004520 3300037471 Bacteria 14409
81 Ga0316581_0023110 3300037588 Bacteria 1837
82 Ga0400487_10746 3300039110 Bacteria 3082
83 Ga0436361_0523382 3300039447 Bacteria 3597
84 Ga0436363_0873503 3300039450 Bacteria 2582
85 Ga0451577_0063089 3300042876 Bacteria 3304
86 Ga0466972_0021213 3300044658 Bacteria 3241
87 Ga0466972_0022134 3300044658 Bacteria 3165
88 Ga0453684_0035938 3300044712 Bacteria 6836
89 Ga0466968_0059449 3300044735 Bacteria 1646
90 Ga0495580_0035580 3300046472 Bacteria 3580
91 Ga0495580_0035827 3300046472 Bacteria 3567
92 Ga0495580_0098500 3300046472 Bacteria 2034
93 Ga0495605_0017112 3300046474 Bacteria 3913
94 Ga0495639_0087036 3300046475 Bacteria 1462
95 Ga0495664_0023463 3300046477 Bacteria 3581
96 Ga0495664_0036628 3300046477 Bacteria 2892
97 Ga0495584_0011281 3300046491 Bacteria 4577
98 Ga0495585_0010395 3300046492 Bacteria 5542
99 Ga0495607_0045484 3300046501 Bacteria 2582
100 Ga0495616_0119224 3300046513 Bacteria 1220
101 Ga0495628_0048191 3300046516 Bacteria 3378
102 Ga0495628_0094060 3300046516 Bacteria 2317
103 Ga0495630_0048753 3300046517 Bacteria 3170
104 Ga0495644_0010937 3300046523 Bacteria 3497
105 Ga0495648_0024839 3300046524 Bacteria 4069
106 Ga0495648_0031354 3300046524 Bacteria 3501
107 Ga0495642_0003232 3300046528 Bacteria 6459
108 Ga0495645_0034601 3300046543 Bacteria 3684
109 Ga0495635_0170706 3300046663 Bacteria 1479
110 Ga0495661_0029250 3300046665 Bacteria 3519
111 Ga0495588_0102315 3300046674 Bacteria 1506
112 Ga0495646_0021402 3300046680 Bacteria 4085
113 Ga0495646_0036631 3300046680 Bacteria 3038
114 Ga0495647_0017412 3300046681 Bacteria 2542
115 Ga0495658_0018947 3300046683 Bacteria 3587
116 Ga0495669_0003931 3300046684 Bacteria 6121
117 Ga0495670_0008915 3300046691 Bacteria 4933
118 Ga0495589_0005577 3300046794 Bacteria 6637
119 Ga0495636_0037950 3300047318 Bacteria 1991
120 Ga0495674_0028647 3300047319 Bacteria 5074
121 Ga0495674_0046676 3300047319 Bacteria 3844
122 Ga0495672_0030468 3300047320 Bacteria 3383
123 Ga0495672_0056821 3300047320 Bacteria 2275
124 Ga0495672_0120262 3300047320 Bacteria 1397
125 Ga0495680_0053169 3300047322 Bacteria 3154
126 Ga0495675_0028734 3300047444 Bacteria 3544
127 Ga0495679_008401 3300047446 Bacteria 4200
128 Ga0495679_011551 3300047446 Bacteria 3401
129 Ga0495681_0081889 3300047470 Bacteria 1439
130 Ga0495602_0097144 3300048088 Bacteria 2427
131 Ga0495626_0029118 3300048091 Bacteria 2675
132 Ga0496100_0057343 3300048903 Bacteria 2551
133 Ga0496100_0067727 3300048903 Bacteria 2372
134 Ga0496101_0075615 3300048904 Bacteria 2479
135 Ga0496102_0019346 3300048905 Bacteria 5998
136 Ga0496102_0199418 3300048905 Bacteria 1886
137 Ga0496104_0067602 3300048907 Bacteria 3395
138 Ga0496104_0097694 3300048907 Bacteria 2811
139 Ga0496105_0057841 3300048908 Bacteria 3201
140 Ga0496105_0069059 3300048908 Bacteria 2920
141 Ga0496105_0117319 3300048908 Bacteria 2195
142 Ga0496106_0127885 3300048909 Bacteria 1991
143 Ga0496106_0370866 3300048909 Unclassified 1150
144 Ga0496108_0178987 3300048911 Bacteria 1836
145 Ga0496110_0081922 3300048913 Bacteria 2877
146 Ga0496113_0452597 3300048916 Bacteria 1032
147 Ga0496114_0206968 3300048917 Bacteria 1720
148 Ga0496114_0247538 3300048917 Bacteria 1568
149 Ga0496115_0185322 3300048918 Bacteria 1720
150 Ga0496118_0092449 3300048921 Bacteria 2076
151 Ga0496119_0088109 3300048922 Unclassified 1770
152 Ga0496121_0036643 3300048924 Bacteria 4368
153 Ga0496126_0006932 3300048929 Bacteria 12545
154 Ga0495682_0012771 3300049460 Bacteria 3212
155 Ga0495682_0021638 3300049460 Bacteria 2408
156 Ga0501031_0025556 3300049568 Bacteria 3851
157 Ga0501033_0135494 3300049570 Bacteria 1782
158 Ga0501037_0040704 3300049573 Bacteria 3419
159 Ga0501040_0114176 3300049576 Bacteria 1891
160 Ga0501042_0187677 3300049578 Bacteria 1491
161 Ga0501045_0148912 3300049824 Bacteria 1741
162 nmdc:mga05p37_279990_c1 3300050507 Bacteria 1989
163 nmdc:mga05p37_64432_c1 3300050507 Bacteria 4510
164 nmdc:mga0n895_430713_c1 3300050512 Unclassified 1333
165 Ga0495619_0094212 3300053085 Bacteria 2031
166 Ga0501082_0256297 3300060353 Bacteria 1522
167 2516025329 2515154189 Bacteria 9629850
168 2882633443 2882632389 Bacteria 8154593
169 2883088404 2883087390 Bacteria 9532701
170 2883088426 2883087390 Bacteria 9532701
171 2921648239 2921643360 Bacteria 11448031
172 2921649394 2921643360 Bacteria 11448031
173 2958116632 2958115193 Bacteria 6923548
174 LJNas_1001767
175 Ga0070658_10036482
176 Ga0070670_100226077
177 Ga0070666_10008874
178 Ga0068868_100141320
179 Ga0070675_100345148
180 Ga0070667_100027665
181 Ga0070714_100245633
182 Ga0070710_10048701
183 Ga0070700_100025004
184 Ga0070708_100056627
185 Ga0070708_100060634
186 Ga0070678_100129164
187 Ga0070706_100022199
188 Ga0070706_100148802
189 Ga0070698_100229836
190 Ga0070698_100359765
191 Ga0070699_100030469
192 Ga0070699_100076589
193 Ga0070697_100000973
194 Ga0070717_10019404
195 Ga0070717_10069425
196 Ga0075428_100065566
197 Ga0075435_100055809
198 Ga0099794_10001690
199 Ga0099794_10009221
200 Ga0105245_10210128
201 Ga0105247_10082655
202 Ga0114129_10834627
203 Ga0105248_10091384
204 Ga0105237_10045300
205 Ga0105237_10072278
206 Ga0105238_10175299
207 Ga0105249_10044245
208 Ga0099796_10051115
209 Ga0105239_10469477
210 Ga0157378_10274965
211 Ga0163162_10225980
212 Ga0157375_10004195
213 Ga0163163_10020336
214 Ga0163161_10035802
215 Ga0213872_10045797
216 Ga0213874_10023778
217 Ga0207699_10053793
218 Ga0207684_10021459
219 Ga0207671_10028372
220 Ga0207711_10113797
221 Ga0207658_10028560
222 Ga0207678_10018986
223 Ga0207708_10034409
224 Ga0207648_10213995
225 Ga0207698_10057540
226 Ga0209588_1004417
227 Ga0209588_1011808
228 Ga0265334_10020945
229 Ga0307515_10081338
230 Ga0265760_10003145
231 Ga0265331_10016017
232 Ga0307509_10065495
233 Ga0265313_10097781
234 Ga0316575_10023434
235 Ga0316579_10037321
236 Ga0316579_10066713
237 Ga0316578_10005258
238 Ga0316577_10051479
239 Ga0316583_10018711
240 Ga0316592_1002672
241 Ga0316596_1009413
242 Ga0316212_1006941
243 Ga0373936_0164964
244 Ga0373954_0216895
245 Ga0373956_0012957
246 Ga0316574_0091321
247 Ga0316574_0162374
248 Ga0373927_0029263
249 Ga0373933_0147124
250 Ga0373937_0170134
251 Ga0316582_0044297
252 Ga0373925_0453802
253 Ga0395905_0004520
254 Ga0316581_0023110
255 Ga0400487_10746
256 Ga0436361_0523382
257 Ga0436363_0873503
258 Ga0451577_0063089
259 Ga0466972_0021213
260 Ga0466972_0022134
261 Ga0453684_0035938
262 Ga0466968_0059449
263 Ga0495580_0035580
264 Ga0495580_0035827
265 Ga0495580_0098500
266 Ga0495605_0017112
267 Ga0495639_0087036
268 Ga0495664_0023463
269 Ga0495664_0036628
270 Ga0495584_0011281
271 Ga0495585_0010395
272 Ga0495607_0045484
273 Ga0495616_0119224
274 Ga0495628_0048191
275 Ga0495628_0094060
276 Ga0495630_0048753
277 Ga0495644_0010937
278 Ga0495648_0024839
279 Ga0495648_0031354
280 Ga0495642_0003232
281 Ga0495645_0034601
282 Ga0495635_0170706
283 Ga0495661_0029250
284 Ga0495588_0102315
285 Ga0495646_0021402
286 Ga0495646_0036631
287 Ga0495647_0017412
288 Ga0495658_0018947
289 Ga0495669_0003931
290 Ga0495670_0008915
291 Ga0495589_0005577
292 Ga0495636_0037950
293 Ga0495674_0028647
294 Ga0495674_0046676
295 Ga0495672_0030468
296 Ga0495672_0056821
297 Ga0495672_0120262
298 Ga0495680_0053169
299 Ga0495675_0028734
300 Ga0495679_008401
301 Ga0495679_011551
302 Ga0495681_0081889
303 Ga0495602_0097144
304 Ga0495626_0029118
305 Ga0496100_0057343
306 Ga0496100_0067727
307 Ga0496101_0075615
308 Ga0496102_0019346
309 Ga0496102_0199418
310 Ga0496104_0067602
311 Ga0496104_0097694
312 Ga0496105_0057841
313 Ga0496105_0069059
314 Ga0496105_0117319
315 Ga0496106_0127885
316 Ga0496106_0370866
317 Ga0496108_0178987
318 Ga0496110_0081922
319 Ga0496113_0452597
320 Ga0496114_0206968
321 Ga0496114_0247538
322 Ga0496115_0185322
323 Ga0496118_0092449
324 Ga0496119_0088109
325 Ga0496121_0036643
326 Ga0496126_0006932
327 Ga0495682_0012771
328 Ga0495682_0021638
329 Ga0501031_0025556
330 Ga0501033_0135494
331 Ga0501037_0040704
332 Ga0501040_0114176
333 Ga0501042_0187677
334 Ga0501045_0148912
335 nmdc:mga05p37_279990_c1
336 nmdc:mga05p37_64432_c1
337 nmdc:mga0n895_430713_c1
338 Ga0495619_0094212
339 Ga0501082_0256297
340 2516025329
341 2882633443
342 2883088404
343 2883088426
344 2921648239
345 2921649394
346 2958116632

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00589

Phage_integrase

Phage integrase family

105

302

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
1ae9-assembly1.cif.gz_B structure of the lambda integrase catalytic core 0.7279 101 287
1aih-assembly2.cif.gz_C catalytic domain of bacteriophage hp1 integrase 0.7273 104 309
1ae9-assembly1.cif.gz_A structure of the lambda integrase catalytic core 0.7232 101 289
1ae9-assembly1.cif.gz_B structure of the lambda integrase catalytic core 0.6972 101 287
5dcf-assembly1.cif.gz_A c-terminal domain of xerd recombinase in complex with gamma domain of ftsk 0.6882 105 310
ID Description Score Start End Superfamily
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8274 106 308 1.10.443.10
af_P0ADH5_4_190_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8126 96 296 1.10.443.10
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8104 106 308 1.10.443.10
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.8075 103 308 1.10.443.10
af_Q2FY74_109_289_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.7994 103 308 1.10.443.10
ID Description Score Start End GO Terms
AF-A0A2V8WA54-F1-model_v4 Integrase 0.9613 1 97
AF-A0A2V8WA54-F1-model_v4 Integrase 0.9517 1 97
AF-A0A7W0Y5I3-F1-model_v4 Tyrosine-type recombinase/integrase 0.9475 137 247 GO:0003677
GO:0006310
GO:0015074
AF-T1B6U1-F1-model_v4 Integrase/recombinase 0.9208 102 285 GO:0003677
GO:0006310
GO:0015074
AF-A0A2D7E618-F1-model_v4 deleted 0.919 135 312

Map