F260123

General Info

Members Datasets Scaffolds Average Seq Length
172 112 344 287

Family's Representative Sequence

Representative Sequence 3300005336|Ga0070680_100160901|Ga0070680_1001609011
Length 315
Sequence VADDAGGQRVRPAGAAALEPMSGGVRLRRSVLFMPASNARALEKARTLPADALVFDLEDAVAPDAKPDARRMAATAAGSGGYAPREIVIRVNALDTPWGRDDLAAAAGSGADAILLPKVESDAAVRETLRVLDQAGAPAGLTLWCMLETPRGVLRAEEIAAASSRVAALVMGTSDLTKDLRARHTPDRLPLLTSLGLCVLAARAHGRAALDGVHLDLDDEAGFLAACRQAAAMGFDGKTLIHPKTIAGANEAFAPSADEATRARRIIDAHADAVARGQGVVVVDGRLVENLHVEDARRVVALAEAIAARVAAATG

Samples

Sample ID Description Type Environment
1 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
2 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
5 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
9 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
14 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
15 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
18 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
19 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
22 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
23 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
24 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
25 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
26 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
28 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
29 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
30 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
31 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
32 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
33 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
34 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
35 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
36 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
37 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
38 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
49 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
50 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
51 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
52 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
53 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
54 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
55 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
56 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
57 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
58 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
59 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
60 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
61 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
62 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
63 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
64 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
65 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
66 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
73 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
79 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
87 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
88 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
89 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
90 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
91 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
92 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
93 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
94 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
95 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
96 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
97 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
98 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
99 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
100 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
101 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
102 2511231221 Azospirillum lipoferum 4B Isolate Rhizosphere
103 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
104 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
105 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
106 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
107 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
108 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
109 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
110 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
111 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
112 8054002106 Azospirillum lipoferum 59b Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.02
Metatranscriptomes 0.58
Isolates 6.4

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.07
Nodule 0.58
Rhizoplane 0.58
Rhizosphere 88.95
Stem 0
Stem Tuber 0
Unclassified 4.65

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070680_100160901 3300005336 Bacteria 1887
2 JGI25151J46595_10000364 3300003187 Bacteria 47703
3 JGI25160J50197_1001849 3300003354 Bacteria 10149
4 Ga0070680_100171881 3300005336 Bacteria 1824
5 Ga0070671_100256708 3300005355 Bacteria 1485
6 Ga0070694_100134035 3300005444 Bacteria 1793
7 Ga0070708_100179645 3300005445 Bacteria 1977
8 Ga0070681_10008021 3300005458 Bacteria 10338
9 Ga0070681_10113560 3300005458 Bacteria 2648
10 Ga0070706_100017177 3300005467 Bacteria 6682
11 Ga0070707_100035703 3300005468 Bacteria 4743
12 Ga0070699_100101286 3300005518 Bacteria 2525
13 Ga0070679_100015409 3300005530 Bacteria 7347
14 Ga0070679_100339214 3300005530 Bacteria 1451
15 Ga0068853_100119211 3300005539 Bacteria 2352
16 Ga0070672_100435218 3300005543 Bacteria 1128
17 Ga0070704_100059556 3300005549 Bacteria 2725
18 Ga0070704_100185337 3300005549 Bacteria 1668
19 Ga0068854_100304569 3300005578 Bacteria 1290
20 Ga0068858_100464665 3300005842 Bacteria 1220
21 Ga0081455_10006385 3300005937 Bacteria 12656
22 Ga0081538_10075584 3300005981 Bacteria 1827
23 Ga0081540_1065504 3300005983 Bacteria 1708
24 Ga0081539_10013641 3300005985 Bacteria 6110
25 Ga0070716_100136112 3300006173 Bacteria 1560
26 Ga0075430_100000090 3300006846 Bacteria 52459
27 Ga0075430_100307660 3300006846 Bacteria 1311
28 Ga0075430_100322688 3300006846 Bacteria 1276
29 Ga0075431_100003749 3300006847 Bacteria 14767
30 Ga0075431_100044949 3300006847 Unclassified 4553
31 Ga0075431_100503744 3300006847 Bacteria 1202
32 Ga0075429_100068519 3300006880 Unclassified 3088
33 Ga0075436_100284766 3300006914 Bacteria 1182
34 Ga0114129_10003598 3300009147 Bacteria 21791
35 Ga0114129_10169407 3300009147 Bacteria 2978
36 Ga0114129_10812910 3300009147 Unclassified 1191
37 Ga0105238_10033196 3300009551 Bacteria 5253
38 Ga0157370_10012301 3300013104 Bacteria 8881
39 Ga0157375_10339142 3300013308 Bacteria 1668
40 Ga0163163_10230592 3300014325 Bacteria 1901
41 Ga0157379_10025714 3300014968 Bacteria 5232
42 Ga0213875_10056157 3300021388 Bacteria 1844
43 Ga0213871_10004736 3300021441 Bacteria 2748
44 Ga0209130_1001277 3300025284 Bacteria 17438
45 Ga0209675_1002562 3300025291 Bacteria 9225
46 Ga0209025_1000936 3300025294 Bacteria 44418
47 Ga0209758_1003650 3300025297 Bacteria 13727
48 Ga0207426_1001086 3300025302 Bacteria 25373
49 Ga0207684_10017592 3300025910 Bacteria 6131
50 Ga0207684_10230300 3300025910 Bacteria 1599
51 Ga0207707_10145825 3300025912 Bacteria 2069
52 Ga0207652_10296167 3300025921 Bacteria 1460
53 Ga0207652_10345466 3300025921 Bacteria 1343
54 Ga0207646_10109644 3300025922 Bacteria 2476
55 Ga0207694_10018161 3300025924 Bacteria 5317
56 Ga0207644_10160784 3300025931 Bacteria 1746
57 Ga0207712_10036838 3300025961 Bacteria 3334
58 Ga0207639_10215349 3300026041 Bacteria 1656
59 Ga0207639_10328263 3300026041 Bacteria 1360
60 Ga0207678_10219367 3300026067 Bacteria 1628
61 Ga0265338_10054144 3300028800 Bacteria 3581
62 Ga0265324_10029050 3300029957 Bacteria 1947
63 Ga0265328_10002459 3300031239 Bacteria 8310
64 Ga0265328_10064016 3300031239 Bacteria 1351
65 Ga0265339_10010486 3300031249 Bacteria 5755
66 Ga0265331_10000107 3300031250 Bacteria 112221
67 Ga0265331_10001086 3300031250 Bacteria 20962
68 Ga0265331_10015381 3300031250 Bacteria 4041
69 Ga0265327_10026900 3300031251 Bacteria 3323
70 Ga0265316_10015652 3300031344 Bacteria 6621
71 Ga0265313_10000295 3300031595 Bacteria 54290
72 Ga0265313_10029970 3300031595 Bacteria 2807
73 Ga0265314_10025543 3300031711 Bacteria 4453
74 Ga0265342_10002843 3300031712 Bacteria 14612
75 Ga0307409_100355188 3300031995 Bacteria 1384
76 Ga0307416_100301114 3300032002 Bacteria 1594
77 Ga0307411_10158660 3300032005 Bacteria 1691
78 Ga0307415_100242127 3300032126 Bacteria 1460
79 Ga0316593_10033387 3300032168 Bacteria 1684
80 Ga0373941_0019776 3300035115 Bacteria 1880
81 Ga0316574_0046504 3300035398 Bacteria 2692
82 Ga0373931_0149838 3300035691 Bacteria 1359
83 Ga0373937_0023247 3300036401 Bacteria 5580
84 Ga0395900_0319208 3300037418 Bacteria 1534
85 Ga0436364_0130320 3300037853 Bacteria 3066
86 Ga0436365_1908585 3300039437 Bacteria 1652
87 Ga0436360_0126181 3300039438 Bacteria 6026
88 Ga0436360_0313306 3300039438 Bacteria 2473
89 Ga0436361_0885102 3300039447 Bacteria 11716
90 Ga0439431_0051444 3300041997 Bacteria 1069
91 Ga0439464_0022623 3300042439 Bacteria 1733
92 Ga0451577_0000130 3300042876 Bacteria 167763
93 Ga0451577_0006036 3300042876 Bacteria 12191
94 Ga0451577_0011709 3300042876 Bacteria 8280
95 Ga0451577_0050524 3300042876 Bacteria 3711
96 Ga0451577_0057224 3300042876 Bacteria 3476
97 Ga0451577_0060864 3300042876 Bacteria 3366
98 Ga0451577_0079795 3300042876 Bacteria 2917
99 Ga0451577_0303447 3300042876 Bacteria 1447
100 Ga0451577_0318868 3300042876 Bacteria 1409
101 Ga0451577_0562515 3300042876 Bacteria 1035
102 Ga0453683_0000248 3300044673 Bacteria 71208
103 Ga0453683_0002505 3300044673 Bacteria 14168
104 Ga0453683_0009407 3300044673 Bacteria 6522
105 Ga0453683_0009993 3300044673 Bacteria 6313
106 Ga0453683_0012263 3300044673 Bacteria 5621
107 Ga0453683_0149960 3300044673 Bacteria 1473
108 Ga0453684_0000015 3300044712 Bacteria 969198
109 Ga0453684_0000020 3300044712 Bacteria 879938
110 Ga0453684_0000301 3300044712 Bacteria 207812
111 Ga0453684_0000983 3300044712 Bacteria 93257
112 Ga0453684_0005417 3300044712 Bacteria 25281
113 Ga0453684_0009326 3300044712 Bacteria 17215
114 Ga0453684_0031986 3300044712 Bacteria 7377
115 Ga0453684_0045965 3300044712 Bacteria 5816
116 Ga0453684_0063956 3300044712 Bacteria 4702
117 Ga0453684_0066003 3300044712 Bacteria 4611
118 Ga0453684_0088426 3300044712 Bacteria 3836
119 Ga0453684_0126056 3300044712 Bacteria 3081
120 Ga0453684_0332896 3300044712 Bacteria 1716
121 Ga0453684_0651616 3300044712 Bacteria 1149
122 Ga0451576_0001776 3300045051 Bacteria 35316
123 Ga0451576_0021848 3300045051 Bacteria 6947
124 Ga0451576_0100006 3300045051 Bacteria 3016
125 Ga0451576_0150252 3300045051 Bacteria 2429
126 Ga0451576_0217822 3300045051 Bacteria 1993
127 Ga0451576_0232946 3300045051 Bacteria 1923
128 Ga0451576_0337630 3300045051 Bacteria 1577
129 Ga0495580_0340181 3300046472 Bacteria 1018
130 Ga0495610_0009981 3300046512 Bacteria 5936
131 Ga0496102_0047578 3300048905 Bacteria 3899
132 Ga0501031_0398931 3300049568 Bacteria 890
133 Ga0501034_0618942 3300049571 Bacteria 987
134 Ga0501039_0027319 3300049575 Bacteria 4389
135 Ga0501040_0000134 3300049576 Bacteria 39560
136 Ga0501040_0017776 3300049576 Bacteria 4719
137 Ga0501042_0000017 3300049578 Bacteria 51241
138 Ga0501042_0346805 3300049578 Bacteria 1074
139 Ga0501048_0119044 3300049582 Bacteria 1866
140 Ga0501073_0019163 3300049589 Bacteria 4944
141 Ga0501075_0076881 3300049591 Unclassified 2526
142 Ga0501075_0332204 3300049591 Bacteria 1158
143 Ga0501077_0074450 3300049593 Bacteria 2151
144 Ga0501079_0108924 3300049741 Bacteria 2151
145 Ga0501080_0608851 3300049742 Bacteria 969
146 Ga0501081_0098861 3300049743 Bacteria 2061
147 Ga0501083_0018538 3300049744 Bacteria 4850
148 nmdc:mga05p37_3199_c1 3300050507 Bacteria 19062
149 nmdc:mga05p37_359282_c1 3300050507 Unclassified 1713
150 nmdc:mga09592_20498_c1 3300050508 Bacteria 5437
151 nmdc:mga09592_25713_c1 3300050508 Unclassified 4874
152 nmdc:mga09592_394551_c1 3300050508 Bacteria 1196
153 nmdc:mga0qj67_4868_c1 3300050509 Bacteria 9765
154 nmdc:mga06r32_219330_c1 3300050510 Bacteria 1890
155 nmdc:mga06r32_226030_c1 3300050510 Unclassified 1860
156 nmdc:mga06r32_4659_c1 3300050510 Bacteria 12309
157 nmdc:mga06r32_48235_c1 3300050510 Unclassified 4070
158 nmdc:mga08x19_244043_c1 3300050514 Bacteria 1239
159 nmdc:mga0a205_77376_c1 3300050515 Bacteria 3214
160 Ga0501082_0254854 3300060353 Bacteria 1527
161 Ga0530510_0245301 3300061734 Bacteria 1334
162 2512032604 2511231221 Bacteria 6846400
163 2523104270 2522572158 Bacteria 6514390
164 2599103214 2597490356 Bacteria 7030811
165 2821450826 2821443989 Bacteria 7658172
166 2842336435 2842333319 Bacteria 8899485
167 2844533954 2844533157 Bacteria 7517899
168 2846953090 2846952575 Bacteria 6587527
169 2848860794 2848858292 Bacteria 7391279
170 2883296826 2883291878 Bacteria 5894118
171 2883359588 2883354860 Bacteria 5865246
172 8054006141 8054002106 Bacteria 7987183
173 Ga0070680_100160901
174 JGI25151J46595_10000364
175 JGI25160J50197_1001849
176 Ga0070680_100171881
177 Ga0070671_100256708
178 Ga0070694_100134035
179 Ga0070708_100179645
180 Ga0070681_10008021
181 Ga0070681_10113560
182 Ga0070706_100017177
183 Ga0070707_100035703
184 Ga0070699_100101286
185 Ga0070679_100015409
186 Ga0070679_100339214
187 Ga0068853_100119211
188 Ga0070672_100435218
189 Ga0070704_100059556
190 Ga0070704_100185337
191 Ga0068854_100304569
192 Ga0068858_100464665
193 Ga0081455_10006385
194 Ga0081538_10075584
195 Ga0081540_1065504
196 Ga0081539_10013641
197 Ga0070716_100136112
198 Ga0075430_100000090
199 Ga0075430_100307660
200 Ga0075430_100322688
201 Ga0075431_100003749
202 Ga0075431_100044949
203 Ga0075431_100503744
204 Ga0075429_100068519
205 Ga0075436_100284766
206 Ga0114129_10003598
207 Ga0114129_10169407
208 Ga0114129_10812910
209 Ga0105238_10033196
210 Ga0157370_10012301
211 Ga0157375_10339142
212 Ga0163163_10230592
213 Ga0157379_10025714
214 Ga0213875_10056157
215 Ga0213871_10004736
216 Ga0209130_1001277
217 Ga0209675_1002562
218 Ga0209025_1000936
219 Ga0209758_1003650
220 Ga0207426_1001086
221 Ga0207684_10017592
222 Ga0207684_10230300
223 Ga0207707_10145825
224 Ga0207652_10296167
225 Ga0207652_10345466
226 Ga0207646_10109644
227 Ga0207694_10018161
228 Ga0207644_10160784
229 Ga0207712_10036838
230 Ga0207639_10215349
231 Ga0207639_10328263
232 Ga0207678_10219367
233 Ga0265338_10054144
234 Ga0265324_10029050
235 Ga0265328_10002459
236 Ga0265328_10064016
237 Ga0265339_10010486
238 Ga0265331_10000107
239 Ga0265331_10001086
240 Ga0265331_10015381
241 Ga0265327_10026900
242 Ga0265316_10015652
243 Ga0265313_10000295
244 Ga0265313_10029970
245 Ga0265314_10025543
246 Ga0265342_10002843
247 Ga0307409_100355188
248 Ga0307416_100301114
249 Ga0307411_10158660
250 Ga0307415_100242127
251 Ga0316593_10033387
252 Ga0373941_0019776
253 Ga0316574_0046504
254 Ga0373931_0149838
255 Ga0373937_0023247
256 Ga0395900_0319208
257 Ga0436364_0130320
258 Ga0436365_1908585
259 Ga0436360_0126181
260 Ga0436360_0313306
261 Ga0436361_0885102
262 Ga0439431_0051444
263 Ga0439464_0022623
264 Ga0451577_0000130
265 Ga0451577_0006036
266 Ga0451577_0011709
267 Ga0451577_0050524
268 Ga0451577_0057224
269 Ga0451577_0060864
270 Ga0451577_0079795
271 Ga0451577_0303447
272 Ga0451577_0318868
273 Ga0451577_0562515
274 Ga0453683_0000248
275 Ga0453683_0002505
276 Ga0453683_0009407
277 Ga0453683_0009993
278 Ga0453683_0012263
279 Ga0453683_0149960
280 Ga0453684_0000015
281 Ga0453684_0000020
282 Ga0453684_0000301
283 Ga0453684_0000983
284 Ga0453684_0005417
285 Ga0453684_0009326
286 Ga0453684_0031986
287 Ga0453684_0045965
288 Ga0453684_0063956
289 Ga0453684_0066003
290 Ga0453684_0088426
291 Ga0453684_0126056
292 Ga0453684_0332896
293 Ga0453684_0651616
294 Ga0451576_0001776
295 Ga0451576_0021848
296 Ga0451576_0100006
297 Ga0451576_0150252
298 Ga0451576_0217822
299 Ga0451576_0232946
300 Ga0451576_0337630
301 Ga0495580_0340181
302 Ga0495610_0009981
303 Ga0496102_0047578
304 Ga0501031_0398931
305 Ga0501034_0618942
306 Ga0501039_0027319
307 Ga0501040_0000134
308 Ga0501040_0017776
309 Ga0501042_0000017
310 Ga0501042_0346805
311 Ga0501048_0119044
312 Ga0501073_0019163
313 Ga0501075_0076881
314 Ga0501075_0332204
315 Ga0501077_0074450
316 Ga0501079_0108924
317 Ga0501080_0608851
318 Ga0501081_0098861
319 Ga0501083_0018538
320 nmdc:mga05p37_3199_c1
321 nmdc:mga05p37_359282_c1
322 nmdc:mga09592_20498_c1
323 nmdc:mga09592_25713_c1
324 nmdc:mga09592_394551_c1
325 nmdc:mga0qj67_4868_c1
326 nmdc:mga06r32_219330_c1
327 nmdc:mga06r32_226030_c1
328 nmdc:mga06r32_4659_c1
329 nmdc:mga06r32_48235_c1
330 nmdc:mga08x19_244043_c1
331 nmdc:mga0a205_77376_c1
332 Ga0501082_0254854
333 Ga0530510_0245301
334 2512032604
335 2523104270
336 2599103214
337 2821450826
338 2842336435
339 2844533954
340 2846953090
341 2848860794
342 2883296826
343 2883359588
344 8054006141

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03328

HpcH_HpaI

HpcH/HpaI aldolase/citrate lyase family

29

243

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
5vxs-assembly2.cif.gz_E crystal structure analysis of human clybl in apo form 0.9433 1 247
3qll-assembly1.cif.gz_A crystal structure of ripc from yersinia pestis 0.9403 7 238
4l9y-assembly1.cif.gz_B crystal structure of rhodobacter sphaeroides malyl-coa lyase in complex with magnesium, glyoxylate, and propionyl-coa 0.94 4 233
5vxs-assembly1.cif.gz_A crystal structure analysis of human clybl in apo form 0.9384 1 247
5vxs-assembly1.cif.gz_B crystal structure analysis of human clybl in apo form 0.9355 1 247
ID Description Score Start End Superfamily
3qllC00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9423 7 238 3.20.20.60
4l9yB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.94 4 233 3.20.20.60
1sgjA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9298 7 232 3.20.20.60
3qllC00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9121 7 238 3.20.20.60
af_I6YF40_17_287_3.20.20.60 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Phosphoenolpyruvate-binding domains 0.9112 7 250 3.20.20.60
ID Description Score Start End GO Terms
AF-A0A854Q040-F1-model_v4 deleted 0.996 13 97
AF-A0A382D2N4-F1-model_v4 HpcH/HpaI aldolase/citrate lyase domain-containing protein 0.9897 2 108 GO:0000287
GO:0003824
GO:0006107
AF-A0A0A0D0Z6-F1-model_v4 Malyl-CoA thiolesterase 0.989 1 75 GO:0000287
GO:0003824
GO:0006107
AF-A0A519WUE1-F1-model_v4 deleted 0.9842 2 84
AF-A0A3B9CF18-F1-model_v4 deleted 0.9828 1 221

Map