F258220

General Info

Members Datasets Scaffolds Average Seq Length
171 137 342 393

Family's Representative Sequence

Representative Sequence 3300005436|Ga0070713_100201083|Ga0070713_1002010832
Length 441
Sequence MRARSASLPQCEDGLQITHFETAIAPFFGRPRPLDQISIPRHAGITLSPVSSGTAMHIEPMSISIDEDLLSDLRSRIRATRWPDAAPGEAWHQGTDLAYLKGLLDYWSGQFDWRAQERRLNEFHHFRADVDGSPVHFVHERARGPGGIPLILTHGWPSSFAEFLPLVPLLTDPQGHGVDGPAFDVVIPSLPGYGFSERPARTGVTTRSTARRWHALMRGLGYERYGAQGADFGAGVTTYMALDHPEPMIGIHLSTAEVPPYTGPGSRQLSPDERRFVDRNQQWSDVERGYSAIQSTKPQTLGYGLNDSPAGLAAWIVEKWRSWSDSGGDLDAHVSRDFLLTVITLYWVTQTITSSMRDYVDNRWSGVPIGPDDFVTVPTAVANFANHFVAEGEPPREWFARLYNVRQWTPMRRGGHFAAAEEPELLARDIAMFFANRPNGG

Samples

Sample ID Description Type Environment
1 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
24 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
33 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
34 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
41 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
45 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
48 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
54 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
55 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
56 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
60 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
61 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
88 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
89 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
90 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
91 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
92 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
93 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
94 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
95 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
96 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
97 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
98 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
99 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
100 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
101 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
102 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
103 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
104 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
105 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
106 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
110 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
111 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
112 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
113 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
114 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
115 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
116 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
117 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
118 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
119 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
120 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
121 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
127 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
130 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
131 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
132 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
133 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
134 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
135 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
136 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
137 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber

Type Distribution

Type Percentage (%)
Metagenomes 99.42
Metatranscriptomes 0
Isolates 0.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.26
Nodule 0
Rhizoplane 2.92
Rhizosphere 88.89
Stem 0
Stem Tuber 0.58
Unclassified 5.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070713_100201083 3300005436 Bacteria 1799
2 JGI24751J29686_10002007 3300002459 Unclassified 4141
3 JGI25406J46586_10005770 3300003203 Bacteria 5726
4 Ga0070676_10010684 3300005328 Bacteria 4981
5 Ga0070670_100059298 3300005331 Unclassified 3285
6 Ga0068869_100036737 3300005334 Bacteria 3479
7 Ga0070669_100122688 3300005353 Bacteria 1984
8 Ga0070675_100001904 3300005354 Bacteria 15407
9 Ga0070671_100187199 3300005355 Bacteria 1754
10 Ga0070674_100147525 3300005356 Bacteria 1772
11 Ga0070659_100080139 3300005366 Bacteria 2606
12 Ga0070711_100189546 3300005439 Bacteria 1579
13 Ga0070705_100057790 3300005440 Bacteria 2290
14 Ga0070700_100006142 3300005441 Bacteria 6400
15 Ga0070700_100187097 3300005441 Bacteria 1445
16 Ga0070708_100010304 3300005445 Bacteria 7568
17 Ga0070708_100025249 3300005445 Bacteria 5078
18 Ga0070681_10012794 3300005458 Bacteria 8329
19 Ga0068867_100042411 3300005459 Bacteria 3328
20 Ga0070699_100159806 3300005518 Bacteria 1994
21 Ga0070686_100080354 3300005544 Bacteria 2157
22 Ga0070695_100007288 3300005545 Bacteria 6556
23 Ga0070696_100002672 3300005546 Bacteria 11810
24 Ga0070704_100025436 3300005549 Bacteria 3897
25 Ga0070704_100182346 3300005549 Bacteria 1680
26 Ga0068857_100053442 3300005577 Unclassified 3583
27 Ga0068854_100031067 3300005578 Bacteria 3709
28 Ga0068856_100063327 3300005614 Bacteria 3653
29 Ga0070702_100027369 3300005615 Bacteria 3075
30 Ga0070702_100060596 3300005615 Bacteria 2201
31 Ga0068852_100042709 3300005616 Bacteria 3840
32 Ga0068859_100142179 3300005617 Unclassified 2473
33 Ga0068864_100049241 3300005618 Bacteria 3625
34 Ga0068861_100016144 3300005719 Bacteria 5276
35 Ga0068861_100017665 3300005719 Bacteria 5069
36 Ga0081455_10102872 3300005937 Bacteria 2289
37 Ga0081540_1000130 3300005983 Bacteria 80050
38 Ga0081540_1006010 3300005983 Bacteria 8938
39 Ga0081539_10000146 3300005985 Bacteria 164571
40 Ga0081539_10003374 3300005985 Bacteria 19774
41 Ga0070715_10033081 3300006163 Bacteria 2111
42 Ga0097621_100029528 3300006237 Bacteria 4331
43 Ga0068871_100244355 3300006358 Bacteria 1562
44 Ga0075428_100054486 3300006844 Bacteria 4382
45 Ga0075428_100097583 3300006844 Bacteria 3203
46 Ga0075430_100004041 3300006846 Bacteria 12381
47 Ga0075431_100006053 3300006847 Bacteria 11995
48 Ga0075433_10013189 3300006852 Bacteria 6708
49 Ga0075433_10159427 3300006852 Bacteria 2008
50 Ga0075433_10303242 3300006852 Bacteria 1414
51 Ga0075434_100181633 3300006871 Bacteria 2124
52 Ga0075429_100024102 3300006880 Bacteria 5277
53 Ga0075429_100096812 3300006880 Bacteria 2575
54 Ga0075429_100131965 3300006880 Bacteria 2185
55 Ga0075429_100191138 3300006880 Bacteria 1794
56 Ga0097620_100142180 3300006931 Unclassified 2473
57 Ga0099794_10003368 3300007265 Bacteria 6089
58 Ga0105240_10499257 3300009093 Bacteria 1353
59 Ga0111539_10265828 3300009094 Bacteria 1997
60 Ga0105247_10043138 3300009101 Bacteria 2763
61 Ga0114129_10034455 3300009147 Bacteria 7151
62 Ga0114129_10223841 3300009147 Bacteria 2537
63 Ga0114129_10297877 3300009147 Bacteria 2151
64 Ga0105243_10146445 3300009148 Bacteria 2021
65 Ga0105241_10002785 3300009174 Bacteria 13094
66 Ga0105238_10086720 3300009551 Bacteria 3118
67 Ga0105238_10225879 3300009551 Bacteria 1849
68 Ga0105249_10094587 3300009553 Bacteria 2801
69 Ga0105246_10028066 3300011119 Bacteria 3695
70 Ga0157374_10051844 3300013296 Bacteria 3819
71 Ga0157378_10157670 3300013297 Bacteria 2120
72 Ga0157372_10280502 3300013307 Bacteria 1937
73 Ga0163163_10025134 3300014325 Bacteria 5676
74 Ga0163163_10135814 3300014325 Unclassified 2501
75 Ga0157380_10151579 3300014326 Unclassified 2005
76 Ga0157377_10019340 3300014745 Bacteria 3557
77 Ga0157379_10231939 3300014968 Bacteria 1673
78 Ga0207688_10014685 3300025901 Bacteria 4253
79 Ga0207647_10001344 3300025904 Bacteria 18881
80 Ga0207645_10001664 3300025907 Bacteria 18110
81 Ga0207684_10065512 3300025910 Bacteria 3085
82 Ga0207695_10015948 3300025913 Bacteria 8822
83 Ga0207693_10009604 3300025915 Bacteria 7876
84 Ga0207660_10139730 3300025917 Bacteria 1851
85 Ga0207662_10039055 3300025918 Bacteria 2783
86 Ga0207657_10103867 3300025919 Bacteria 2355
87 Ga0207646_10028391 3300025922 Bacteria 5094
88 Ga0207681_10173021 3300025923 Bacteria 1638
89 Ga0207650_10026642 3300025925 Unclassified 4126
90 Ga0207659_10002454 3300025926 Bacteria 11059
91 Ga0207665_10081541 3300025939 Bacteria 2228
92 Ga0207712_10067017 3300025961 Bacteria 2568
93 Ga0207668_10041432 3300025972 Bacteria 3113
94 Ga0207640_10103632 3300025981 Bacteria 2001
95 Ga0207677_10140694 3300026023 Bacteria 1847
96 Ga0207678_10049839 3300026067 Bacteria 3619
97 Ga0207708_10002261 3300026075 Bacteria 14190
98 Ga0207708_10040944 3300026075 Bacteria 3533
99 Ga0207641_10304608 3300026088 Bacteria 1506
100 Ga0207648_10027390 3300026089 Bacteria 5058
101 Ga0207674_10090733 3300026116 Unclassified 3047
102 Ga0207675_100006704 3300026118 Bacteria 10888
103 Ga0207675_100056052 3300026118 Bacteria 3677
104 Ga0207683_10083574 3300026121 Bacteria 2837
105 Ga0207698_10025879 3300026142 Bacteria 4142
106 Ga0307512_10015873 3300030522 Bacteria 6966
107 Ga0307513_10046240 3300031456 Bacteria 4748
108 Ga0307516_10146201 3300031730 Bacteria 2129
109 Ga0307405_10009512 3300031731 Bacteria 4986
110 Ga0307413_10017276 3300031824 Bacteria 3753
111 Ga0307410_10039248 3300031852 Bacteria 3107
112 Ga0307406_10061158 3300031901 Bacteria 2431
113 Ga0307407_10004968 3300031903 Bacteria 5720
114 Ga0307409_100126703 3300031995 Bacteria 2173
115 Ga0307416_100057275 3300032002 Bacteria 3152
116 Ga0307416_100438660 3300032002 Bacteria 1355
117 Ga0307414_10194548 3300032004 Bacteria 1644
118 Ga0307411_10015513 3300032005 Bacteria 4282
119 Ga0373929_0000018 3300035085 Bacteria 109595
120 Ga0373929_0006956 3300035085 Bacteria 2056
121 Ga0373951_0033293 3300035091 Bacteria 1221
122 Ga0373941_0028101 3300035115 Bacteria 1649
123 Ga0373962_0008177 3300035242 Bacteria 2571
124 Ga0373931_0046109 3300035691 Bacteria 2303
125 Ga0373937_0033207 3300036401 Bacteria 4685
126 Ga0373937_0119523 3300036401 Bacteria 2455
127 Ga0373937_0188534 3300036401 Bacteria 1937
128 Ga0395900_0009940 3300037418 Bacteria 9741
129 Ga0395898_0004088 3300037466 Bacteria 16005
130 Ga0395905_0001651 3300037471 Bacteria 26373
131 Ga0395901_0010107 3300038443 Bacteria 9560
132 Ga0439435_0006727 3300042436 Bacteria 2595
133 Ga0495627_000840 3300046453 Bacteria 22071
134 Ga0495629_0000003 3300046459 Bacteria 529162
135 Ga0495665_0152537 3300046531 Bacteria 1206
136 Ga0495587_0076105 3300046536 Bacteria 1949
137 Ga0495658_0151496 3300046683 Bacteria 1425
138 Ga0496103_0150248 3300048906 Bacteria 1492
139 Ga0496106_0066203 3300048909 Bacteria 2751
140 Ga0496108_0010650 3300048911 Bacteria 7459
141 Ga0496109_0000352 3300048912 Bacteria 42688
142 Ga0496110_0016455 3300048913 Bacteria 6175
143 Ga0496121_0049601 3300048924 Bacteria 3557
144 Ga0501039_0214501 3300049575 Bacteria 1514
145 Ga0501048_0192597 3300049582 Bacteria 1445
146 Ga0501079_0160023 3300049741 Unclassified 1756
147 Ga0501044_0000267 3300049823 Bacteria 66089
148 nmdc:mga05p37_102657_c1 3300050507 Bacteria 3521
149 nmdc:mga05p37_104221_c1 3300050507 Bacteria 3490
150 nmdc:mga05p37_111009_c1 3300050507 Bacteria 3372
151 nmdc:mga05p37_153920_c1 3300050507 Bacteria 2811
152 nmdc:mga09592_21350_c1 3300050508 Bacteria 5336
153 nmdc:mga0qj67_446_c1 3300050509 Bacteria 28226
154 nmdc:mga0qj67_78922_c1 3300050509 Bacteria 2636
155 nmdc:mga06r32_104428_c1 3300050510 Bacteria 2782
156 nmdc:mga06r32_136373_c1 3300050510 Bacteria 2428
157 nmdc:mga06r32_76848_c1 3300050510 Bacteria 3243
158 nmdc:mga08y16_94437_c1 3300050511 Bacteria 3115
159 nmdc:mga0n895_109311_c1 3300050512 Bacteria 2780
160 nmdc:mga0n895_368361_c1 3300050512 Bacteria 1455
161 nmdc:mga0n895_51377_c1 3300050512 Bacteria 4044
162 Ga0500635_0001634 3300053080 Bacteria 5407
163 Ga0500566_0001184 3300053094 Bacteria 15212
164 Ga0500566_0001471 3300053094 Bacteria 13782
165 Ga0500641_0041680 3300053096 Bacteria 1858
166 Ga0500568_0000288 3300053139 Bacteria 41481
167 Ga0500568_0008818 3300053139 Bacteria 4835
168 Ga0500568_0010294 3300053139 Bacteria 4387
169 Ga0500577_0002260 3300053142 Bacteria 4911
170 Ga0500603_002445 3300053150 Bacteria 4077
171 2899372827 2899370129 Bacteria 6781179
172 Ga0070713_100201083
173 JGI24751J29686_10002007
174 JGI25406J46586_10005770
175 Ga0070676_10010684
176 Ga0070670_100059298
177 Ga0068869_100036737
178 Ga0070669_100122688
179 Ga0070675_100001904
180 Ga0070671_100187199
181 Ga0070674_100147525
182 Ga0070659_100080139
183 Ga0070711_100189546
184 Ga0070705_100057790
185 Ga0070700_100006142
186 Ga0070700_100187097
187 Ga0070708_100010304
188 Ga0070708_100025249
189 Ga0070681_10012794
190 Ga0068867_100042411
191 Ga0070699_100159806
192 Ga0070686_100080354
193 Ga0070695_100007288
194 Ga0070696_100002672
195 Ga0070704_100025436
196 Ga0070704_100182346
197 Ga0068857_100053442
198 Ga0068854_100031067
199 Ga0068856_100063327
200 Ga0070702_100027369
201 Ga0070702_100060596
202 Ga0068852_100042709
203 Ga0068859_100142179
204 Ga0068864_100049241
205 Ga0068861_100016144
206 Ga0068861_100017665
207 Ga0081455_10102872
208 Ga0081540_1000130
209 Ga0081540_1006010
210 Ga0081539_10000146
211 Ga0081539_10003374
212 Ga0070715_10033081
213 Ga0097621_100029528
214 Ga0068871_100244355
215 Ga0075428_100054486
216 Ga0075428_100097583
217 Ga0075430_100004041
218 Ga0075431_100006053
219 Ga0075433_10013189
220 Ga0075433_10159427
221 Ga0075433_10303242
222 Ga0075434_100181633
223 Ga0075429_100024102
224 Ga0075429_100096812
225 Ga0075429_100131965
226 Ga0075429_100191138
227 Ga0097620_100142180
228 Ga0099794_10003368
229 Ga0105240_10499257
230 Ga0111539_10265828
231 Ga0105247_10043138
232 Ga0114129_10034455
233 Ga0114129_10223841
234 Ga0114129_10297877
235 Ga0105243_10146445
236 Ga0105241_10002785
237 Ga0105238_10086720
238 Ga0105238_10225879
239 Ga0105249_10094587
240 Ga0105246_10028066
241 Ga0157374_10051844
242 Ga0157378_10157670
243 Ga0157372_10280502
244 Ga0163163_10025134
245 Ga0163163_10135814
246 Ga0157380_10151579
247 Ga0157377_10019340
248 Ga0157379_10231939
249 Ga0207688_10014685
250 Ga0207647_10001344
251 Ga0207645_10001664
252 Ga0207684_10065512
253 Ga0207695_10015948
254 Ga0207693_10009604
255 Ga0207660_10139730
256 Ga0207662_10039055
257 Ga0207657_10103867
258 Ga0207646_10028391
259 Ga0207681_10173021
260 Ga0207650_10026642
261 Ga0207659_10002454
262 Ga0207665_10081541
263 Ga0207712_10067017
264 Ga0207668_10041432
265 Ga0207640_10103632
266 Ga0207677_10140694
267 Ga0207678_10049839
268 Ga0207708_10002261
269 Ga0207708_10040944
270 Ga0207641_10304608
271 Ga0207648_10027390
272 Ga0207674_10090733
273 Ga0207675_100006704
274 Ga0207675_100056052
275 Ga0207683_10083574
276 Ga0207698_10025879
277 Ga0307512_10015873
278 Ga0307513_10046240
279 Ga0307516_10146201
280 Ga0307405_10009512
281 Ga0307413_10017276
282 Ga0307410_10039248
283 Ga0307406_10061158
284 Ga0307407_10004968
285 Ga0307409_100126703
286 Ga0307416_100057275
287 Ga0307416_100438660
288 Ga0307414_10194548
289 Ga0307411_10015513
290 Ga0373929_0000018
291 Ga0373929_0006956
292 Ga0373951_0033293
293 Ga0373941_0028101
294 Ga0373962_0008177
295 Ga0373931_0046109
296 Ga0373937_0033207
297 Ga0373937_0119523
298 Ga0373937_0188534
299 Ga0395900_0009940
300 Ga0395898_0004088
301 Ga0395905_0001651
302 Ga0395901_0010107
303 Ga0439435_0006727
304 Ga0495627_000840
305 Ga0495629_0000003
306 Ga0495665_0152537
307 Ga0495587_0076105
308 Ga0495658_0151496
309 Ga0496103_0150248
310 Ga0496106_0066203
311 Ga0496108_0010650
312 Ga0496109_0000352
313 Ga0496110_0016455
314 Ga0496121_0049601
315 Ga0501039_0214501
316 Ga0501048_0192597
317 Ga0501079_0160023
318 Ga0501044_0000267
319 nmdc:mga05p37_102657_c1
320 nmdc:mga05p37_104221_c1
321 nmdc:mga05p37_111009_c1
322 nmdc:mga05p37_153920_c1
323 nmdc:mga09592_21350_c1
324 nmdc:mga0qj67_446_c1
325 nmdc:mga0qj67_78922_c1
326 nmdc:mga06r32_104428_c1
327 nmdc:mga06r32_136373_c1
328 nmdc:mga06r32_76848_c1
329 nmdc:mga08y16_94437_c1
330 nmdc:mga0n895_109311_c1
331 nmdc:mga0n895_368361_c1
332 nmdc:mga0n895_51377_c1
333 Ga0500635_0001634
334 Ga0500566_0001184
335 Ga0500566_0001471
336 Ga0500641_0041680
337 Ga0500568_0000288
338 Ga0500568_0008818
339 Ga0500568_0010294
340 Ga0500577_0002260
341 Ga0500603_002445
342 2899372827

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06441

EHN

Epoxide hydrolase N terminus

58

163

0.96

PF00561

Abhydrolase_1

alpha/beta hydrolase fold

148

312

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5f4z-assembly3.cif.gz_E the crystal structure of an epoxide hydrolase from streptomyces carzinostaticus subsp. neocarzinostaticus 0.925 49 414
4qla-assembly1.cif.gz_B crystal structure of juvenile hormone epoxide hydrolase from the silkworm bombyx mori 0.9141 45 414
4qa9-assembly1.cif.gz_A ensemble refinement of an epoxide hydrolase from streptomyces carzinostaticus subsp. neocarzinostaticus. 0.9041 45 413
4qla-assembly1.cif.gz_A crystal structure of juvenile hormone epoxide hydrolase from the silkworm bombyx mori 0.8802 45 414
5f4z-assembly3.cif.gz_E the crystal structure of an epoxide hydrolase from streptomyces carzinostaticus subsp. neocarzinostaticus 0.8721 49 414
ID Description Score Start End Superfamily
af_Q23068_49_452_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9159 49 414 3.40.50.1820
af_Q7JRC3_35_470_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9141 46 413 3.40.50.1820
4qlaB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9141 45 414 3.40.50.1820
af_Q9D379_48_454_3.40.50.1820 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9134 49 413 3.40.50.1820
4qa9A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Alpha/Beta hydrolase fold, catalytic domain 0.9041 45 413 3.40.50.1820
ID Description Score Start End GO Terms
AF-A0A535A3X5-F1-model_v4 Epoxide hydrolase 0.9717 46 175 GO:0004301
GO:0009056
GO:0097176
AF-A0A2D6RYN9-F1-model_v4 Multidrug MFS transporter 0.9701 46 146 GO:0004301
GO:0009056
GO:0097176
AF-A0A382FXK0-F1-model_v4 Epoxide hydrolase N-terminal domain-containing protein 0.9643 46 243 GO:0004301
GO:0009056
GO:0097176
AF-A0A381ZZR1-F1-model_v4 Epoxide hydrolase N-terminal domain-containing protein 0.9626 39 242 GO:0004301
GO:0009056
GO:0097176
AF-A0A077Y050-F1-model_v4 Putative epoxide hydrolase (EC 3.3.2.10) 0.961 46 160 GO:0004301
GO:0009056
GO:0097176

Map