F257428

General Info

Members Datasets Scaffolds Average Seq Length
170 120 159 242

Family's Representative Sequence

Representative Sequence 3300046660|Ga0495625_0056271|Ga0495625_0056271_1495_2307
Length 270
Sequence LIFYHLVIAAGFRVPNFAGTNNIKMKDQTTNGLLINKRVIILGGSSGIGLATAKAATNEGAKVIIVSSNQQRIKDALSQLPANSEGYATDLTSEAAIKALFEKTGKIDHLVYTAGENIKLGLLKDTLMDDARHYFTLRYWGAVTAVKYAAPHINTNGSITLTSGIASVRPQAGWGMGASMCAAMEGFMRAMAIELAPIRVNLVSPGFVRTPLWDGFPETEREAMYASIANSLPVKHVGAADEIAQSYLYLMKQTFSTGQVVVVDGGAVLV

Samples

Sample ID Description Type Environment
1 2510065045 Paraburkholderia sprentiae WSM5005 Isolate Nodule
2 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
3 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
4 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
5 2718217991 Paraburkholderia sprentiae WSM5005 Isolate Nodule
6 2738541283 Pedobacter sp. OK701 Isolate Unclassified
7 2738541302 Pedobacter sp. CF074 Isolate Unclassified
8 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
9 2818991444 Filimonas endophytica 3197 Isolate Unclassified
10 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
11 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
12 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
13 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
14 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
15 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
16 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
17 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
18 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
19 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
20 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
21 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
22 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
23 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
24 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
25 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
26 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
27 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
28 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
29 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
30 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
31 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
32 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
37 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
49 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
50 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
51 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
52 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
55 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
56 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
74 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
75 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
76 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
77 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
78 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
79 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
80 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
81 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
82 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
83 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
84 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
85 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
86 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
87 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
91 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
92 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
93 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
94 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
95 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
96 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
97 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
98 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
99 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
100 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
101 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
102 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
103 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
104 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
105 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
106 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
107 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
108 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
111 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
112 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
113 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
114 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
115 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
116 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
117 3300053135 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere Metagenome Endosphere
118 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
119 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
120 8055266321 Paraburkholderia rhynchosiae LMG 27174 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 93.53
Metatranscriptomes 0
Isolates 6.47

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.06
Nodule 1.76
Rhizoplane 1.18
Rhizosphere 66.47
Stem 0
Stem Tuber 0
Unclassified 13.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1007826 3300001904 Bacteria 1790
2 JGI24739J22299_10002451 3300001989 Bacteria 7153
3 JGI24735J21928_10002126 3300002067 Bacteria 6978
4 JGI25153J46596_10018479 3300003215 Bacteria 2705
5 JGI25153J46596_10023839 3300003215 Bacteria 2220
6 rootH2_10034613 3300003320 Bacteria 8823
7 rootH2_10104130 3300003320 Bacteria 4645
8 rootH2_10124054 3300003320 Bacteria 14745
9 rootH2_10217803 3300003320 Bacteria 2648
10 rootL2_10065766 3300003322 Bacteria 27487
11 rootL2_10092306 3300003322 Bacteria 2895
12 rootL2_10101088 3300003322 Bacteria 11252
13 rootL2_10354865 3300003322 Unclassified 1142
14 rootH1_10073059 3300003323 Bacteria 2792
15 rootH1_10177336 3300003323 Bacteria 2779
16 rootH1_10348954 3300003323 Bacteria 1631
17 JGI25160J50197_1022618 3300003354 Unclassified 1838
18 Ga0055526_1006150 3300003771 Bacteria 6612
19 Ga0055526_1012993 3300003771 Bacteria 3569
20 Ga0055528_1000188 3300003790 Bacteria 52620
21 Ga0055530_10015836 3300003791 Unclassified 2439
22 Ga0055530_10015918 3300003791 Unclassified 2427
23 Ga0055530_10016476 3300003791 Bacteria 2359
24 Ga0055531_10032597 3300003794 Unclassified 1698
25 Ga0065165_1000128 3300005262 Bacteria 129513
26 Ga0065165_1001277 3300005262 Bacteria 28455
27 Ga0070658_10005027 3300005327 Bacteria 10765
28 Ga0070658_10257915 3300005327 Unclassified 1480
29 Ga0070660_100153523 3300005339 Bacteria 1852
30 Ga0070661_100062386 3300005344 Bacteria 2736
31 Ga0070659_100037857 3300005366 Bacteria 3761
32 Ga0070709_10204810 3300005434 Unclassified 1399
33 Ga0070714_100104539 3300005435 Bacteria 2499
34 Ga0070714_100388452 3300005435 Unclassified 1317
35 Ga0070713_100009287 3300005436 Bacteria 7030
36 Ga0070698_100015197 3300005471 Bacteria 8139
37 Ga0070697_100321109 3300005536 Bacteria 1333
38 Ga0068855_100027851 3300005563 Bacteria 6759
39 Ga0068857_100079443 3300005577 Bacteria 2928
40 Ga0068854_100369483 3300005578 Bacteria 1179
41 Ga0070717_10022440 3300006028 Bacteria 4988
42 Ga0070717_10271229 3300006028 Unclassified 1503
43 Ga0070716_100162071 3300006173 Unclassified 1450
44 Ga0105240_10002985 3300009093 Bacteria 26611
45 Ga0105240_10050035 3300009093 Bacteria 5270
46 Ga0105240_10138234 3300009093 Bacteria 2915
47 Ga0105240_10744304 3300009093 Bacteria 1066
48 Ga0105240_10993009 3300009093 Bacteria 898
49 Ga0105237_10094735 3300009545 Bacteria 2975
50 Ga0105238_10245997 3300009551 Bacteria 1766
51 Ga0105239_10000052 3300010375 Bacteria 164624
52 Ga0105239_10001726 3300010375 Bacteria 28800
53 Ga0105239_10002084 3300010375 Bacteria 25915
54 Ga0105239_10037012 3300010375 Bacteria 5353
55 Ga0105239_10048809 3300010375 Bacteria 4641
56 Ga0105239_10295329 3300010375 Bacteria 1825
57 Ga0157373_10031408 3300013100 Bacteria 3823
58 Ga0157371_10000107 3300013102 Bacteria 126477
59 Ga0157370_10010657 3300013104 Bacteria 9673
60 Ga0157369_10000362 3300013105 Bacteria 60506
61 Ga0157374_10000244 3300013296 Bacteria 50589
62 Ga0157372_10005428 3300013307 Bacteria 13548
63 Ga0157372_10068231 3300013307 Bacteria 3998
64 Ga0182008_10000043 3300014497 Bacteria 117076
65 Ga0182006_1054461 3300015261 Bacteria 1530
66 Ga0182005_1000204 3300015265 Bacteria 40184
67 Ga0213872_10000687 3300021361 Bacteria 25499
68 Ga0213872_10013358 3300021361 Bacteria 3849
69 Ga0209673_1000085 3300025273 Bacteria 215647
70 Ga0209676_1000370 3300025292 Bacteria 83303
71 Ga0209564_1002862 3300025295 Bacteria 12664
72 Ga0209564_1025421 3300025295 Unclassified 1992
73 Ga0209758_1004045 3300025297 Bacteria 12641
74 Ga0209758_1004576 3300025297 Bacteria 11399
75 Ga0209050_1001110 3300025298 Bacteria 32580
76 Ga0209050_1002449 3300025298 Bacteria 15890
77 Ga0209050_1015399 3300025298 Bacteria 3214
78 Ga0207426_1002061 3300025302 Bacteria 13971
79 Ga0209051_1043106 3300025303 Unclassified 1587
80 Ga0209257_1000006 3300025304 Bacteria 1570111
81 Ga0209257_1002463 3300025304 Bacteria 18318
82 Ga0207647_10000529 3300025904 Bacteria 30445
83 Ga0207647_10009093 3300025904 Bacteria 7073
84 Ga0207705_10007633 3300025909 Bacteria 7954
85 Ga0207684_10257519 3300025910 Bacteria 1506
86 Ga0207695_10000010 3300025913 Bacteria 981919
87 Ga0207695_10001601 3300025913 Bacteria 36747
88 Ga0207671_10005395 3300025914 Bacteria 11791
89 Ga0207671_10036440 3300025914 Bacteria 3648
90 Ga0207693_10120019 3300025915 Unclassified 2065
91 Ga0207657_10016008 3300025919 Bacteria 7240
92 Ga0207700_10033454 3300025928 Unclassified 3679
93 Ga0207664_10347089 3300025929 Unclassified 1313
94 Ga0207690_10008261 3300025932 Bacteria 6174
95 Ga0207667_10012301 3300025949 Bacteria 9874
96 Ga0207667_10040294 3300025949 Bacteria 4974
97 Ga0207640_10316254 3300025981 Bacteria 1241
98 Ga0207702_10187725 3300026078 Bacteria 1907
99 Ga0307517_10125088 3300028786 Unclassified 1880
100 Ga0265325_10022461 3300031241 Bacteria 3456
101 Ga0265340_10022903 3300031247 Bacteria 3188
102 Ga0307513_10421450 3300031456 Unclassified 1065
103 Ga0307408_100042025 3300031548 Bacteria 3244
104 Ga0307405_10094009 3300031731 Bacteria 1993
105 Ga0307413_10050366 3300031824 Bacteria 2502
106 Ga0326468_10000358 3300031889 Bacteria 4841
107 Ga0307406_10016194 3300031901 Bacteria 4327
108 Ga0307407_10003446 3300031903 Bacteria 6491
109 Ga0307412_10007506 3300031911 Bacteria 6191
110 Ga0307412_10691717 3300031911 Bacteria 874
111 Ga0307416_100005588 3300032002 Bacteria 7747
112 Ga0307415_100023511 3300032126 Bacteria 3827
113 Ga0307415_100171682 3300032126 Bacteria 1692
114 Ga0395900_0012508 3300037418 Bacteria 8680
115 Ga0395898_0036621 3300037466 Bacteria 4872
116 Ga0395905_0112771 3300037471 Bacteria 2554
117 Ga0395901_0177775 3300038443 Bacteria 2232
118 Ga0436360_0110114 3300039438 Bacteria 2060
119 Ga0436360_0237733 3300039438 Unclassified 1240
120 Ga0436360_0561119 3300039438 Bacteria 4136
121 Ga0436361_0675040 3300039447 Bacteria 1361
122 Ga0436361_0679752 3300039447 Bacteria 2405
123 Ga0436361_0814925 3300039447 Bacteria 6124
124 Ga0436361_0816738 3300039447 Bacteria 4889
125 Ga0436361_0827287 3300039447 Bacteria 7123
126 Ga0436361_0871729 3300039447 Bacteria 3279
127 Ga0436361_1162183 3300039447 Bacteria 3395
128 Ga0436361_1164737 3300039447 Unclassified 1651
129 Ga0436363_1014402 3300039450 Bacteria 769
130 Ga0436362_0461047 3300039453 Bacteria 2310
131 Ga0436362_0902693 3300039453 Bacteria 1111
132 Ga0439436_0009613 3300041404 Bacteria 2965
133 Ga0439447_023172 3300041407 Bacteria 1620
134 Ga0439448_0017732 3300042005 Bacteria 2176
135 Ga0439452_007968 3300042010 Bacteria 3210
136 Ga0466972_0000374 3300044658 Bacteria 24067
137 Ga0466965_0089085 3300044683 Bacteria 1568
138 Ga0466971_0251121 3300044719 Bacteria 843
139 Ga0466957_0095125 3300044842 Bacteria 1871
140 Ga0466960_0354172 3300044901 Bacteria 838
141 Ga0495629_0028346 3300046459 Bacteria 3976
142 Ga0495638_0000001 3300046460 Bacteria 1114121
143 Ga0495580_0149839 3300046472 Bacteria 1616
144 Ga0495606_0006589 3300046507 Bacteria 10673
145 Ga0495637_0006356 3300046520 Bacteria 5938
146 Ga0495668_0000997 3300046616 Bacteria 30583
147 Ga0495668_0007187 3300046616 Bacteria 7157
148 Ga0495625_0056271 3300046660 Bacteria 2801
149 Ga0495674_0129774 3300047319 Bacteria 2124
150 Ga0495626_0005097 3300048091 Bacteria 7829
151 Ga0496110_0052566 3300048913 Bacteria 3580
152 Ga0496115_0355531 3300048918 Bacteria 1194
153 Ga0496121_0000007 3300048924 Bacteria 942516
154 Ga0496124_0102578 3300048927 Unclassified 2315
155 Ga0501074_0030841 3300049590 Bacteria 3884
156 Ga0500659_0003751 3300053135 Eukaryota 8825
157 Ga0500604_0001500 3300053151 Bacteria 6529
158 Ga0500622_0000175 3300053156 Bacteria 69363
159 Ga0500622_0042136 3300053156 Bacteria 2373

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039447 Ga0436361_0827287 Ga0436361_0827287_86_682 198
2 3300039450 Ga0436363_1014402 Ga0436363_1014402_21_629 198
3 3300009551 Ga0105238_10245997 Ga0105238_102459972 208
4 3300013105 Ga0157369_10000362 Ga0157369_1000036247 208
5 3300003791 Ga0055530_10016476 Ga0055530_100164762 217
6 3300025298 Ga0209050_1001110 Ga0209050_100111015 217
7 3300046460 Ga0495638_0000001 Ga0495638_0000001_964917_965657 217
8 3300053151 Ga0500604_0001500 Ga0500604_0001500_284_1024 217
9 3300044842 Ga0466957_0095125 Ga0466957_0095125_765_1499 222
10 3300031247 Ga0265340_10022903 Ga0265340_100229032 228
11 3300046616 Ga0495668_0007187 Ga0495668_0007187_596_1336 229
12 3300009545 Ga0105237_10094735 Ga0105237_100947352 230
13 3300014497 Ga0182008_10000043 Ga0182008_1000004373 230
14 3300015261 Ga0182006_1054461 Ga0182006_10544612 230
15 3300025914 Ga0207671_10005395 Ga0207671_100053952 230
16 3300048918 Ga0496115_0355531 Ga0496115_0355531_484_1176 230
17 3300025295 Ga0209564_1025421 Ga0209564_10254213 231
18 3300025302 Ga0207426_1002061 Ga0207426_10020612 231
19 3300025303 Ga0209051_1043106 Ga0209051_10431062 231
20 3300025304 Ga0209257_1002463 Ga0209257_100246314 231
21 3300031241 Ga0265325_10022461 Ga0265325_100224614 231
22 3300031911 Ga0307412_10007506 Ga0307412_100075062 231
23 iso_pu_bacteria 2887478801 2887478969 235
24 3300005327 Ga0070658_10005027 Ga0070658_1000502710 236
25 3300005339 Ga0070660_100153523 Ga0070660_1001535231 236
26 3300005563 Ga0068855_100027851 Ga0068855_1000278513 236
27 3300005578 Ga0068854_100369483 Ga0068854_1003694832 236
28 3300013104 Ga0157370_10010657 Ga0157370_100106573 236
29 3300025909 Ga0207705_10007633 Ga0207705_100076337 236
30 3300025914 Ga0207671_10036440 Ga0207671_100364402 236
31 3300025949 Ga0207667_10012301 Ga0207667_100123019 236
32 3300025981 Ga0207640_10316254 Ga0207640_103162542 236
33 iso_pu_bacteria 2818991442 2819575471 236
34 3300003320 rootH2_10124054 rootH2_1012405418 238
35 3300005435 Ga0070714_100104539 Ga0070714_1001045393 238
36 3300006028 Ga0070717_10022440 Ga0070717_100224407 238
37 3300009093 Ga0105240_10993009 Ga0105240_109930092 238
38 3300049590 Ga0501074_0030841 Ga0501074_0030841_1269_1988 238
39 iso_pu_bacteria 2643221592 2643971328 238
40 iso_pu_bacteria 2643221625 2644142823 238
41 iso_pu_bacteria 2643221648 2644272616 238
42 3300003320 rootH2_10104130 rootH2_101041304 239
43 3300003323 rootH1_10177336 rootH1_101773363 239
44 3300005434 Ga0070709_10204810 Ga0070709_102048102 239
45 3300005435 Ga0070714_100388452 Ga0070714_1003884522 239
46 3300005436 Ga0070713_100009287 Ga0070713_1000092872 239
47 3300006028 Ga0070717_10271229 Ga0070717_102712291 239
48 3300006173 Ga0070716_100162071 Ga0070716_1001620711 239
49 3300021361 Ga0213872_10000687 Ga0213872_1000068711 239
50 3300021361 Ga0213872_10013358 Ga0213872_100133582 239
51 3300025297 Ga0209758_1004576 Ga0209758_10045768 239
52 3300025915 Ga0207693_10120019 Ga0207693_101200192 239
53 3300025928 Ga0207700_10033454 Ga0207700_100334543 239
54 3300025929 Ga0207664_10347089 Ga0207664_103470891 239
55 3300031456 Ga0307513_10421450 Ga0307513_104214501 239
56 3300039438 Ga0436360_0110114 Ga0436360_0110114_585_1316 239
57 3300039438 Ga0436360_0237733 Ga0436360_0237733_188_907 239
58 3300039438 Ga0436360_0561119 Ga0436360_0561119_1600_2319 239
59 3300039447 Ga0436361_0675040 Ga0436361_0675040_473_1192 239
60 3300039447 Ga0436361_0814925 Ga0436361_0814925_4387_5106 239
61 3300039447 Ga0436361_0816738 Ga0436361_0816738_510_1229 239
62 3300039447 Ga0436361_0871729 Ga0436361_0871729_2456_3175 239
63 3300039447 Ga0436361_1162183 Ga0436361_1162183_1430_2149 239
64 3300039447 Ga0436361_1164737 Ga0436361_1164737_825_1556 239
65 3300039453 Ga0436362_0461047 Ga0436362_0461047_1375_2094 239
66 3300039453 Ga0436362_0902693 Ga0436362_0902693_306_1025 239
67 3300046507 Ga0495606_0006589 Ga0495606_0006589_9060_9785 239
68 3300046616 Ga0495668_0000997 Ga0495668_0000997_9740_10465 239
69 3300048091 Ga0495626_0005097 Ga0495626_0005097_2393_3118 239
70 3300015265 Ga0182005_1000204 Ga0182005_100020415 240
71 iso_pu_bacteria 2510065045 2510246925 240
72 iso_pu_bacteria 2718217991 2719638050 240
73 iso_pu_bacteria 8055266321 8055273326 240
74 3300003215 JGI25153J46596_10023839 JGI25153J46596_100238392 241
75 3300005344 Ga0070661_100062386 Ga0070661_1000623862 241
76 3300031548 Ga0307408_100042025 Ga0307408_1000420253 241
77 3300031731 Ga0307405_10094009 Ga0307405_100940091 241
78 3300031824 Ga0307413_10050366 Ga0307413_100503662 241
79 3300031889 Ga0326468_10000358 Ga0326468_100003582 241
80 3300031901 Ga0307406_10016194 Ga0307406_100161942 241
81 3300031903 Ga0307407_10003446 Ga0307407_100034465 241
82 3300031911 Ga0307412_10691717 Ga0307412_106917171 241
83 3300032002 Ga0307416_100005588 Ga0307416_1000055883 241
84 3300032126 Ga0307415_100023511 Ga0307415_1000235112 241
85 iso_pu_bacteria 2738541283 2738757967 241
86 3300028786 Ga0307517_10125088 Ga0307517_101250881 242
87 3300037471 Ga0395905_0112771 Ga0395905_0112771_1237_1965 242
88 3300044658 Ga0466972_0000374 Ga0466972_0000374_16761_17489 242
89 3300044683 Ga0466965_0089085 Ga0466965_0089085_719_1447 242
90 3300044719 Ga0466971_0251121 Ga0466971_0251121_68_796 242
91 3300044901 Ga0466960_0354172 Ga0466960_0354172_78_806 242
92 3300053135 Ga0500659_0003751 Ga0500659_0003751_6394_7179 242
93 3300053156 Ga0500622_0042136 Ga0500622_0042136_591_1319 242
94 iso_pu_bacteria 2738541302 2738855942 242
95 3300003320 rootH2_10034613 rootH2_100346134 243
96 3300009093 Ga0105240_10002985 Ga0105240_1000298516 243
97 3300025913 Ga0207695_10001601 Ga0207695_100016019 243
98 3300048924 Ga0496121_0000007 Ga0496121_0000007_405323_406054 243
99 iso_pu_bacteria 2818991444 2819585534 243
100 3300009093 Ga0105240_10138234 Ga0105240_101382343 244
101 3300010375 Ga0105239_10000052 Ga0105239_1000005210 244
102 3300010375 Ga0105239_10037012 Ga0105239_100370121 244
103 3300013100 Ga0157373_10031408 Ga0157373_100314082 244
104 3300013296 Ga0157374_10000244 Ga0157374_1000024446 244
105 3300013307 Ga0157372_10068231 Ga0157372_100682314 244
106 3300025904 Ga0207647_10009093 Ga0207647_100090934 244
107 3300025913 Ga0207695_10000010 Ga0207695_10000010687 244
108 3300025919 Ga0207657_10016008 Ga0207657_100160088 244
109 3300025949 Ga0207667_10040294 Ga0207667_100402945 244
110 3300026078 Ga0207702_10187725 Ga0207702_101877252 244
111 3300037418 Ga0395900_0012508 Ga0395900_0012508_3807_4541 244
112 3300037466 Ga0395898_0036621 Ga0395898_0036621_3001_3735 244
113 3300038443 Ga0395901_0177775 Ga0395901_0177775_720_1454 244
114 3300041404 Ga0439436_0009613 Ga0439436_0009613_1355_2089 244
115 3300041407 Ga0439447_023172 Ga0439447_023172_78_812 244
116 3300042005 Ga0439448_0017732 Ga0439448_0017732_1053_1787 244
117 3300042010 Ga0439452_007968 Ga0439452_007968_1058_1792 244
118 3300046459 Ga0495629_0028346 Ga0495629_0028346_3187_3921 244
119 3300047319 Ga0495674_0129774 Ga0495674_0129774_1210_1944 244
120 3300001989 JGI24739J22299_10002451 JGI24739J22299_100024512 246
121 3300003215 JGI25153J46596_10018479 JGI25153J46596_100184792 246
122 3300003320 rootH2_10217803 rootH2_102178032 246
123 3300003322 rootL2_10065766 rootL2_100657668 246
124 3300003322 rootL2_10092306 rootL2_100923063 246
125 3300003322 rootL2_10354865 rootL2_103548652 246
126 3300003323 rootH1_10348954 rootH1_103489543 246
127 3300003354 JGI25160J50197_1022618 JGI25160J50197_10226182 246
128 3300003771 Ga0055526_1006150 Ga0055526_10061508 246
129 3300003771 Ga0055526_1012993 Ga0055526_10129932 246
130 3300003790 Ga0055528_1000188 Ga0055528_100018812 246
131 3300003791 Ga0055530_10015836 Ga0055530_100158362 246
132 3300003791 Ga0055530_10015918 Ga0055530_100159182 246
133 3300003794 Ga0055531_10032597 Ga0055531_100325972 246
134 3300005262 Ga0065165_1000128 Ga0065165_100012854 246
135 3300005471 Ga0070698_100015197 Ga0070698_1000151978 246
136 3300005536 Ga0070697_100321109 Ga0070697_1003211092 246
137 3300009093 Ga0105240_10744304 Ga0105240_107443041 246
138 3300025273 Ga0209673_1000085 Ga0209673_100008578 246
139 3300025295 Ga0209564_1002862 Ga0209564_10028629 246
140 3300025297 Ga0209758_1004045 Ga0209758_10040458 246
141 3300025298 Ga0209050_1002449 Ga0209050_100244911 246
142 3300025298 Ga0209050_1015399 Ga0209050_10153993 246
143 3300025304 Ga0209257_1000006 Ga0209257_100000688 246
144 3300025910 Ga0207684_10257519 Ga0207684_102575192 246
145 3300032126 Ga0307415_100171682 Ga0307415_1001716823 246
146 3300046472 Ga0495580_0149839 Ga0495580_0149839_251_1015 246
147 3300046520 Ga0495637_0006356 Ga0495637_0006356_3004_3744 246
148 3300046660 Ga0495625_0056271 Ga0495625_0056271_1495_2307 246
149 3300048913 Ga0496110_0052566 Ga0496110_0052566_2290_3054 246
150 3300053156 Ga0500622_0000175 Ga0500622_0000175_52939_53751 246
151 3300010375 Ga0105239_10295329 Ga0105239_102953293 247
152 3300039447 Ga0436361_0679752 Ga0436361_0679752_210_953 247
153 3300048927 Ga0496124_0102578 Ga0496124_0102578_1175_1918 247
154 3300001904 JGI24736J21556_1007826 JGI24736J21556_10078261 248
155 3300002067 JGI24735J21928_10002126 JGI24735J21928_100021268 248
156 3300003322 rootL2_10101088 rootL2_101010885 248
157 3300003323 rootH1_10073059 rootH1_100730592 248
158 3300005262 Ga0065165_1001277 Ga0065165_10012774 248
159 3300005327 Ga0070658_10257915 Ga0070658_102579151 248
160 3300005366 Ga0070659_100037857 Ga0070659_1000378574 248
161 3300005577 Ga0068857_100079443 Ga0068857_1000794433 248
162 3300009093 Ga0105240_10050035 Ga0105240_100500354 248
163 3300010375 Ga0105239_10001726 Ga0105239_100017263 248
164 3300010375 Ga0105239_10002084 Ga0105239_1000208413 248
165 3300010375 Ga0105239_10048809 Ga0105239_100488092 248
166 3300013102 Ga0157371_10000107 Ga0157371_1000010791 248
167 3300013307 Ga0157372_10005428 Ga0157372_1000542810 248
168 3300025292 Ga0209676_1000370 Ga0209676_100037028 248
169 3300025904 Ga0207647_10000529 Ga0207647_1000052922 248
170 3300025932 Ga0207690_10008261 Ga0207690_100082612 248

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00106

adh_short

short chain dehydrogenase

37

221

0.94

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

43

268

0.92

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

39

125

0.89

PF23441

30

270

0.88

PF08659

KR

KR domain

38

200

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
4bms-assembly1.cif.gz_B short chain alcohol dehydrogenase from ralstonia sp. dsm 6428 in complex with nadph 0.9593 11 248
4bms-assembly2.cif.gz_E-2 short chain alcohol dehydrogenase from ralstonia sp. dsm 6428 in complex with nadph 0.9593 11 248
4i5e-assembly1.cif.gz_B crystal structure of ralstonia sp. alcohol dehydrogenase in complex with nadp+ 0.959 10 248
4bms-assembly1.cif.gz_F short chain alcohol dehydrogenase from ralstonia sp. dsm 6428 in complex with nadph 0.9588 10 248
4bms-assembly1.cif.gz_C short chain alcohol dehydrogenase from ralstonia sp. dsm 6428 in complex with nadph 0.9587 11 248
ID Description Score Start End Superfamily
3uceC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9473 15 248 3.40.50.720
af_Q9BL81_2_252_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9395 16 248 3.40.50.720
3ucfB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9359 15 248 3.40.50.720
3uceC00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9346 15 248 3.40.50.720
af_C6TLW3_3_253_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9246 10 244 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A4U6CNW6-F1-model_v4 SDR family oxidoreductase 0.9911 10 248 GO:0016491
AF-A0A2P8HJ98-F1-model_v4 NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) 0.9897 10 248 GO:0016491
AF-A0A495TW01-F1-model_v4 deleted 0.9875 11 248
AF-A0A839ML44-F1-model_v4 deleted 0.9873 11 248
AF-A0A3S0RF32-F1-model_v4 SDR family oxidoreductase 0.9866 12 248 GO:0016491

Feature Viewer

pLDDT pTM Quality
93 0.91 High
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Predicted Structure (AlphaFold2)

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