F257308

General Info

Members Datasets Scaffolds Average Seq Length
170 120 340 321

Family's Representative Sequence

Representative Sequence 3300044735|Ga0466968_0005257|Ga0466968_0005257_1691_2779
Length 362
Sequence LIVSTHAWELLSNRAVATAGVIYFLALLSHLVEWSALIGRRADRPGQADRADRTADAQVLVGAGAPTEKIDGPEAGAASADDDGADRTDRIAMFGRLGYLLTCLGALAHLTAVISRGIAAHRVPWGNMYEFTIAGTCIVALAYVLLYARLKLAWMAPAVVAFVLVVMMVGVLVLYTPVEPLTEALNSYWLVIHVIAAALATGAFTLGGISSIIYLIKRRRPEADSGWMSRVPSLGALDRVAYRIHAFGFVLWTFAVLIAGPIWAHQAWGSYWNWDPKEVWAFITWVVYAGYLHARATAGWKGRNAAILAIVGLATLWFNFIGINYFSTTSQHSYAGLPAHVAPGGAPALSSSVVAVQTPTVV

Samples

Sample ID Description Type Environment
1 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
7 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
8 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
9 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
14 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
17 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
19 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
20 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
21 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
22 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
23 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
24 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
31 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
32 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
34 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
35 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
36 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
37 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
38 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
39 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
43 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
44 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
45 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
46 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
47 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
48 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
49 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
50 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
51 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
52 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
53 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
54 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
55 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
56 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
57 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
58 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
59 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
60 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
61 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
62 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
63 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
64 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
65 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
66 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
67 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
68 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
69 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
70 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
71 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
72 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
73 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
74 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
75 3300049533 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
76 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
83 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
88 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
89 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
92 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
98 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
99 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
100 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
101 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
104 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
105 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
106 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
107 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
108 2643221561 Nocardioides sp. Root151 Isolate Unclassified
109 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
110 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
111 2643221696 Nocardioides sp. Root140 Isolate Unclassified
112 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
113 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
114 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
115 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
116 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
117 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
118 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
119 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
120 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 91.18
Metatranscriptomes 1.18
Isolates 7.65

Biome Distribution

Category Percentage (%)
Aerial Root 1.18
Bulb 0
Endosphere 10
Nodule 0
Rhizoplane 7.65
Rhizosphere 74.12
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466968_0005257 3300044735 Bacteria 4850
2 Ga0070658_10185873 3300005327 Bacteria 1750
3 Ga0070682_100080490 3300005337 Bacteria 2106
4 Ga0070682_100153504 3300005337 Bacteria 1583
5 Ga0070659_100241892 3300005366 Bacteria 1494
6 Ga0070714_100083215 3300005435 Bacteria 2790
7 Ga0070662_100141400 3300005457 Bacteria 1865
8 Ga0070664_100171867 3300005564 Bacteria 1922
9 Ga0068857_100111912 3300005577 Bacteria 2454
10 Ga0068860_100016601 3300005843 Bacteria 7179
11 Ga0081455_10000177 3300005937 Bacteria 79964
12 Ga0081455_10000671 3300005937 Bacteria 44288
13 Ga0081538_10001516 3300005981 Bacteria 23832
14 Ga0075365_10037265 3300006038 Bacteria 3156
15 Ga0075365_10053246 3300006038 Bacteria 2679
16 Ga0075365_10062925 3300006038 Bacteria 2483
17 Ga0075367_10001229 3300006178 Bacteria 10757
18 Ga0075428_100025271 3300006844 Bacteria 6573
19 Ga0075431_100000108 3300006847 Bacteria 52602
20 Ga0075431_100053529 3300006847 Bacteria 4161
21 Ga0111539_10010952 3300009094 Bacteria 11414
22 Ga0114129_10044460 3300009147 Bacteria 6248
23 Ga0105243_10428805 3300009148 Bacteria 1235
24 Ga0105237_10043107 3300009545 Bacteria 4547
25 Ga0157371_10307811 3300013102 Bacteria 1148
26 Ga0157372_10069712 3300013307 Bacteria 3954
27 Ga0157380_10156099 3300014326 Bacteria 1978
28 Ga0182008_10071209 3300014497 Bacteria 1710
29 Ga0207652_10200546 3300025921 Bacteria 1795
30 Ga0207664_10069675 3300025929 Bacteria 2828
31 Ga0207690_10160630 3300025932 Bacteria 1675
32 Ga0207709_10170667 3300025935 Bacteria 1526
33 Ga0207708_10029802 3300026075 Bacteria 4137
34 Ga0207674_10070400 3300026116 Bacteria 3517
35 Ga0209813_10000902 3300027866 Bacteria 6677
36 Ga0207428_10002940 3300027907 Bacteria 16876
37 Ga0268264_10000193 3300028381 Bacteria 126247
38 Ga0268264_10179625 3300028381 Bacteria 1921
39 Ga0316181_1147298 3300030744 Bacteria 2705
40 Ga0316575_10000810 3300031665 Bacteria 9473
41 Ga0316579_10011446 3300031691 Bacteria 3770
42 Ga0316579_10016747 3300031691 Bacteria 3206
43 Ga0316576_10002044 3300031727 Bacteria 11322
44 Ga0316576_10322802 3300031727 Bacteria 1151
45 Ga0316578_10018133 3300031728 Bacteria 3848
46 Ga0307405_10261675 3300031731 Bacteria 1292
47 Ga0316577_10022491 3300031733 Bacteria 3500
48 Ga0307406_10087730 3300031901 Bacteria 2086
49 Ga0307407_10246357 3300031903 Bacteria 1222
50 Ga0307412_10007210 3300031911 Bacteria 6309
51 Ga0307409_100023586 3300031995 Bacteria 4268
52 Ga0307409_100060612 3300031995 Bacteria 2952
53 Ga0307409_100528234 3300031995 Bacteria 1154
54 Ga0307416_100107187 3300032002 Bacteria 2451
55 Ga0307415_100000246 3300032126 Bacteria 23474
56 Ga0307415_100342404 3300032126 Bacteria 1255
57 Ga0316585_10003404 3300032137 Bacteria 4385
58 Ga0316580_10002839 3300032139 Bacteria 4834
59 Ga0316596_1007530 3300033541 Bacteria 2576
60 Ga0316574_0006194 3300035398 Bacteria 6442
61 Ga0316574_0009599 3300035398 Bacteria 5426
62 Ga0316574_0026433 3300035398 Bacteria 3490
63 Ga0316584_0010416 3300036712 Bacteria 6495
64 Ga0316584_0033335 3300036712 Bacteria 3815
65 Ga0395901_0035521 3300038443 Bacteria 5150
66 Ga0451833_0665749 3300041491 Bacteria 6715
67 Ga0439432_033756 3300042006 Bacteria 1645
68 Ga0439464_0045031 3300042439 Bacteria 1265
69 Ga0466972_0043163 3300044658 Bacteria 2191
70 Ga0466965_0009793 3300044683 Bacteria 4459
71 Ga0466961_0021677 3300044693 Bacteria 4134
72 Ga0466961_0077109 3300044693 Bacteria 2112
73 Ga0466961_0215613 3300044693 Bacteria 1184
74 Ga0466963_0202704 3300044694 Bacteria 1388
75 Ga0466964_0018593 3300044706 Bacteria 2668
76 Ga0466968_0108909 3300044735 Bacteria 1244
77 Ga0466970_0022934 3300044765 Bacteria 3257
78 Ga0466970_0035562 3300044765 Bacteria 2638
79 Ga0466970_0047749 3300044765 Bacteria 2282
80 Ga0466970_0063996 3300044765 Bacteria 1972
81 Ga0466957_0024751 3300044842 Bacteria 3555
82 Ga0466957_0273418 3300044842 Bacteria 1129
83 Ga0466960_0041842 3300044901 Bacteria 2172
84 Ga0466960_0052261 3300044901 Bacteria 1976
85 Ga0466960_0056462 3300044901 Bacteria 1912
86 Ga0466967_0001414 3300045976 Bacteria 13890
87 Ga0466967_0097305 3300045976 Bacteria 2686
88 Ga0495653_0053163 3300046463 Bacteria 3100
89 Ga0496100_0131340 3300048903 Bacteria 1764
90 Ga0496101_0095266 3300048904 Bacteria 2220
91 Ga0496102_0024168 3300048905 Bacteria 5401
92 Ga0496102_0047095 3300048905 Bacteria 3917
93 Ga0496104_0212549 3300048907 Bacteria 1846
94 Ga0496108_0133319 3300048911 Bacteria 2135
95 Ga0496108_0480672 3300048911 Bacteria 1085
96 Ga0496109_0422963 3300048912 Bacteria 1258
97 Ga0496110_0253756 3300048913 Bacteria 1601
98 Ga0496110_0491379 3300048913 Bacteria 1118
99 Ga0496114_0009612 3300048917 Bacteria 7681
100 Ga0496114_0078249 3300048917 Bacteria 2790
101 Ga0496115_0303915 3300048918 Bacteria 1307
102 Ga0496124_0057715 3300048927 Bacteria 3270
103 Ga0501317_018910 3300049533 Bacteria 916
104 Ga0501031_0067270 3300049568 Bacteria 2334
105 Ga0501033_0002329 3300049570 Bacteria 16184
106 Ga0501036_0239931 3300049572 Bacteria 1520
107 Ga0501037_0033542 3300049573 Bacteria 3791
108 Ga0501037_0122794 3300049573 Bacteria 1866
109 Ga0501038_0003607 3300049574 Bacteria 14414
110 Ga0501039_0018421 3300049575 Bacteria 5359
111 Ga0501039_0126008 3300049575 Bacteria 2009
112 Ga0501039_0186110 3300049575 Bacteria 1633
113 Ga0501040_0136264 3300049576 Bacteria 1729
114 Ga0501042_0101048 3300049578 Bacteria 2074
115 Ga0501043_0118805 3300049579 Bacteria 2073
116 Ga0501046_0000707 3300049580 Bacteria 32240
117 Ga0501046_0003461 3300049580 Bacteria 14486
118 Ga0501046_0198452 3300049580 Bacteria 1494
119 Ga0501047_0071306 3300049581 Bacteria 3344
120 Ga0501047_0432076 3300049581 Bacteria 1147
121 Ga0501067_0010807 3300049583 Bacteria 5050
122 Ga0501068_0032250 3300049584 Bacteria 3115
123 Ga0501069_0020766 3300049585 Bacteria 3561
124 Ga0501069_0040579 3300049585 Bacteria 2573
125 Ga0501069_0139828 3300049585 Bacteria 1389
126 Ga0501070_0075528 3300049586 Bacteria 2790
127 Ga0501070_0088787 3300049586 Bacteria 2558
128 Ga0501073_0073870 3300049589 Bacteria 2374
129 Ga0501076_0127630 3300049592 Bacteria 2062
130 Ga0501080_0039236 3300049742 Bacteria 4420
131 Ga0501045_0070062 3300049824 Bacteria 2579
132 Ga0501045_0116081 3300049824 Bacteria 1986
133 Ga0501045_0122633 3300049824 Bacteria 1930
134 nmdc:mga00v17_205801_c1 3300050491 Bacteria 1273
135 nmdc:mga00v17_43558_c1 3300050491 Bacteria 2703
136 nmdc:mga00v17_9765_c1 3300050491 Bacteria 5211
137 nmdc:mga0yw44_137875_c1 3300050492 Bacteria 1584
138 nmdc:mga0yw44_38986_c1 3300050492 Bacteria 2814
139 nmdc:mga0yw44_47226_c1 3300050492 Bacteria 2590
140 nmdc:mga0yw44_76185_c1 3300050492 Bacteria 2093
141 nmdc:mga0yw44_95623_c1 3300050492 Bacteria 1885
142 nmdc:mga06z11_29072_c1 3300050494 Bacteria 2659
143 nmdc:mga06z11_94072_c1 3300050494 Bacteria 1633
144 nmdc:mga07m45_137482_c1 3300050496 Bacteria 1415
145 nmdc:mga07m45_72262_c1 3300050496 Bacteria 1963
146 nmdc:mga05p37_715_c1 3300050507 Bacteria 36765
147 nmdc:mga09592_27994_c1 3300050508 Bacteria 4680
148 nmdc:mga06r32_210_c1 3300050510 Bacteria 47209
149 nmdc:mga06r32_56_c1 3300050510 Bacteria 71167
150 nmdc:mga08y16_3209_c1 3300050511 Bacteria 16925
151 nmdc:mga08y16_420303_c1 3300050511 Bacteria 1366
152 nmdc:mga0n895_122184_c1 3300050512 Bacteria 2625
153 Ga0495601_0117694 3300053077 Bacteria 1724
154 Ga0501084_0321879 3300054114 Bacteria 1306
155 Ga0466962_0137913 3300061719 Bacteria 1181
156 Ga0530510_0059163 3300061734 Bacteria 2772
157 Ga0530510_0088744 3300061734 Bacteria 2254
158 2643824705 2643221561 Bacteria 4984412
159 2643851342 2643221567 Bacteria 4163945
160 2644138068 2643221624 Bacteria 4384879
161 2644535957 2643221696 Bacteria 5431823
162 2774395000 2773857762 Bacteria 5971770
163 2809194152 2808606439 Bacteria 5952208
164 2812348901 2811994878 Bacteria 5992952
165 2857484850 2857481737 Bacteria 4761446
166 2891973353 2891968417 Bacteria 5821697
167 2919449160 2919446982 Bacteria 3994487
168 2984578748 2984576629 Bacteria 4248407
169 2990258000 2990256926 Bacteria 4252839
170 3001890415 3001889506 Bacteria 2975194
171 Ga0466968_0005257
172 Ga0070658_10185873
173 Ga0070682_100080490
174 Ga0070682_100153504
175 Ga0070659_100241892
176 Ga0070714_100083215
177 Ga0070662_100141400
178 Ga0070664_100171867
179 Ga0068857_100111912
180 Ga0068860_100016601
181 Ga0081455_10000177
182 Ga0081455_10000671
183 Ga0081538_10001516
184 Ga0075365_10037265
185 Ga0075365_10053246
186 Ga0075365_10062925
187 Ga0075367_10001229
188 Ga0075428_100025271
189 Ga0075431_100000108
190 Ga0075431_100053529
191 Ga0111539_10010952
192 Ga0114129_10044460
193 Ga0105243_10428805
194 Ga0105237_10043107
195 Ga0157371_10307811
196 Ga0157372_10069712
197 Ga0157380_10156099
198 Ga0182008_10071209
199 Ga0207652_10200546
200 Ga0207664_10069675
201 Ga0207690_10160630
202 Ga0207709_10170667
203 Ga0207708_10029802
204 Ga0207674_10070400
205 Ga0209813_10000902
206 Ga0207428_10002940
207 Ga0268264_10000193
208 Ga0268264_10179625
209 Ga0316181_1147298
210 Ga0316575_10000810
211 Ga0316579_10011446
212 Ga0316579_10016747
213 Ga0316576_10002044
214 Ga0316576_10322802
215 Ga0316578_10018133
216 Ga0307405_10261675
217 Ga0316577_10022491
218 Ga0307406_10087730
219 Ga0307407_10246357
220 Ga0307412_10007210
221 Ga0307409_100023586
222 Ga0307409_100060612
223 Ga0307409_100528234
224 Ga0307416_100107187
225 Ga0307415_100000246
226 Ga0307415_100342404
227 Ga0316585_10003404
228 Ga0316580_10002839
229 Ga0316596_1007530
230 Ga0316574_0006194
231 Ga0316574_0009599
232 Ga0316574_0026433
233 Ga0316584_0010416
234 Ga0316584_0033335
235 Ga0395901_0035521
236 Ga0451833_0665749
237 Ga0439432_033756
238 Ga0439464_0045031
239 Ga0466972_0043163
240 Ga0466965_0009793
241 Ga0466961_0021677
242 Ga0466961_0077109
243 Ga0466961_0215613
244 Ga0466963_0202704
245 Ga0466964_0018593
246 Ga0466968_0108909
247 Ga0466970_0022934
248 Ga0466970_0035562
249 Ga0466970_0047749
250 Ga0466970_0063996
251 Ga0466957_0024751
252 Ga0466957_0273418
253 Ga0466960_0041842
254 Ga0466960_0052261
255 Ga0466960_0056462
256 Ga0466967_0001414
257 Ga0466967_0097305
258 Ga0495653_0053163
259 Ga0496100_0131340
260 Ga0496101_0095266
261 Ga0496102_0024168
262 Ga0496102_0047095
263 Ga0496104_0212549
264 Ga0496108_0133319
265 Ga0496108_0480672
266 Ga0496109_0422963
267 Ga0496110_0253756
268 Ga0496110_0491379
269 Ga0496114_0009612
270 Ga0496114_0078249
271 Ga0496115_0303915
272 Ga0496124_0057715
273 Ga0501317_018910
274 Ga0501031_0067270
275 Ga0501033_0002329
276 Ga0501036_0239931
277 Ga0501037_0033542
278 Ga0501037_0122794
279 Ga0501038_0003607
280 Ga0501039_0018421
281 Ga0501039_0126008
282 Ga0501039_0186110
283 Ga0501040_0136264
284 Ga0501042_0101048
285 Ga0501043_0118805
286 Ga0501046_0000707
287 Ga0501046_0003461
288 Ga0501046_0198452
289 Ga0501047_0071306
290 Ga0501047_0432076
291 Ga0501067_0010807
292 Ga0501068_0032250
293 Ga0501069_0020766
294 Ga0501069_0040579
295 Ga0501069_0139828
296 Ga0501070_0075528
297 Ga0501070_0088787
298 Ga0501073_0073870
299 Ga0501076_0127630
300 Ga0501080_0039236
301 Ga0501045_0070062
302 Ga0501045_0116081
303 Ga0501045_0122633
304 nmdc:mga00v17_205801_c1
305 nmdc:mga00v17_43558_c1
306 nmdc:mga00v17_9765_c1
307 nmdc:mga0yw44_137875_c1
308 nmdc:mga0yw44_38986_c1
309 nmdc:mga0yw44_47226_c1
310 nmdc:mga0yw44_76185_c1
311 nmdc:mga0yw44_95623_c1
312 nmdc:mga06z11_29072_c1
313 nmdc:mga06z11_94072_c1
314 nmdc:mga07m45_137482_c1
315 nmdc:mga07m45_72262_c1
316 nmdc:mga05p37_715_c1
317 nmdc:mga09592_27994_c1
318 nmdc:mga06r32_210_c1
319 nmdc:mga06r32_56_c1
320 nmdc:mga08y16_3209_c1
321 nmdc:mga08y16_420303_c1
322 nmdc:mga0n895_122184_c1
323 Ga0495601_0117694
324 Ga0501084_0321879
325 Ga0466962_0137913
326 Ga0530510_0059163
327 Ga0530510_0088744
328 2643824705
329 2643851342
330 2644138068
331 2644535957
332 2774395000
333 2809194152
334 2812348901
335 2857484850
336 2891973353
337 2919449160
338 2984578748
339 2990258000
340 3001890415

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01578

Cytochrom_C_asm

Cytochrome C assembly protein

125

330

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.8424 82 328
7f02-assembly1.cif.gz_C cytochrome c-type biogenesis protein ccmabcd from e. coli 0.6776 174 325
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.6574 1 315
7s9y-assembly1.cif.gz_A helicobacter hepaticus ccsba open conformation 0.6253 82 328
6zmq-assembly1.cif.gz_A cytochrome c heme lyase ccmf 0.5879 1 315
ID Description Score Start End Superfamily
af_Q55C03_152_358_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.6264 172 316 1.20.120.1770
af_Q9LSE7_201_388_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.6116 183 317 1.20.120.1770
af_K7KZX1_376_557_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.6078 180 324 1.20.120.1770
af_A0A0N7KR22_176_382_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.6014 183 311 1.20.120.1770
af_I1N1W5_186_378_1.20.120.1770 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A); 0.595 177 312 1.20.120.1770
ID Description Score Start End GO Terms
AF-A0A094QGQ7-F1-model_v4 Cytochrome c assembly protein domain-containing protein 0.9747 89 328 GO:0005886
GO:0017004
GO:0020037
AF-A0A0Q7PG51-F1-model_v4 C-type cytochrome biogenesis protein CcsB 0.9716 1 328 GO:0005886
GO:0017004
GO:0020037
AF-A0A5Q2FAG7-F1-model_v4 C-type cytochrome biogenesis protein CcsB 0.9673 89 327 GO:0005886
GO:0017004
GO:0020037
AF-R7Y1A5-F1-model_v4 Cytochrome c assembly protein 0.965 1 328 GO:0005886
GO:0017004
GO:0020037
AF-A0A7K0L5P8-F1-model_v4 C-type cytochrome biogenesis protein CcsB 0.9636 105 318 GO:0005886
GO:0017004
GO:0020037

Map