F254832

General Info

Members Datasets Scaffolds Average Seq Length
169 138 338 496

Family's Representative Sequence

Representative Sequence 3300025302|Ga0207426_1000596|Ga0207426_100059620
Length 552
Sequence MKLVKSLLLGSAAGLIAVGGAQAADLPVKAKAVEYVKICSLYGAGFYYIPGTDTCIKLGGYLRAEVALNTNSDFSGQLNVSSQGANGARNRLTNYYTMRAREDLNIDTRTATEYGVVRTFFDGVFSWTTGNYVGINSTSGGTAYSGTLTAGPAATGTSAFNSVSLYGSGSGSVNGTDGNTSAGSLGVYYAFIQFAGFTMGKAVSQFDAPWTNYPGNNFDSLVGGSGTVTGINQFTYTADFGQGVTAAFSAEDPTSYMQAGNVNLAGASGIGLVGGSFGTTNNSIGGSRSPNLVAMVRVDQAWGLFQASIAAKDNHTAYYGSNEATGHPDDKWGWAVQLALSIKNIPTGAGDVINISGVYTDGATRYNFQNLAGSSYSMWGSNGAAGTYGSVGFAFAPDTTFNGAGTSQETVKTWGFRGAYTHNWDAYWNTAIYGAYAGVSYSDNQKAGICAAFFSASAVTGIGATAATNTCNPDFNVAQLGLITRWTPVKNLTFSADLNWTHLDQKYAGNITLPAAQNAGGAIVAGAAKPTATYTLKDQDTVTLLLRAQRNW

Samples

Sample ID Description Type Environment
1 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
2 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
3 3300003305 Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_13 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003574 Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
5 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
11 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
12 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
13 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
14 3300006941 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW Metagenome Nodule
15 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
16 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
17 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
18 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
19 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
20 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
21 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
22 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
23 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
24 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
25 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
26 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
31 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
32 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
33 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
34 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
35 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
36 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
37 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
38 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
39 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
40 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
41 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
42 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
43 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
44 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
45 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
46 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
47 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
48 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
49 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
52 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
53 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
54 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
55 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
56 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
57 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
58 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
59 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
60 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
61 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
62 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
63 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
64 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
65 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
66 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
67 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
68 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
69 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
70 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
71 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
72 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
73 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
74 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
75 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
76 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
77 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
78 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
79 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
80 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
81 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
82 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
83 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
84 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
85 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
86 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
87 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
88 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
89 3300053725 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 endosphere Metagenome Endosphere
90 3300053736 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 endosphere Metagenome Endosphere
91 3300053737 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 endosphere Metagenome Endosphere
92 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
93 3300059478 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 58R_AW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
95 3300059640 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 8R_CD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
96 3300059646 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 42R_SW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
97 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
98 2507262055 Bradyrhizobium sp. WSM1417 Isolate Nodule
99 2508501009 Bradyrhizobium sp. WSM471 Isolate Nodule
100 2511231028 Bradyrhizobium sp. YR681 Isolate Rhizosphere
101 2513237094 Bradyrhizobium sp. WSM3983 Isolate Nodule
102 2513237102 Bradyrhizobium japonicum USDA 135 Isolate Nodule
103 2524023205 Bradyrhizobium sp. Cp5.3 Isolate Nodule
104 2744054633 Bradyrhizobium neotropicale BR 10247 Isolate Unclassified
105 2791355196 Bradyrhizobium sp. Y36 Isolate Nodule
106 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
107 2824609381 Bradyrhizobium sp. HAMBI 2134 Isolate Unclassified
108 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
109 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
110 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
111 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
112 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
113 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified
114 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
115 2847939898 Bradyrhizobium ottawaense OO99 Isolate Unclassified
116 2849076700 Bradyrhizobium symbiodeficiens 85S1MB Isolate Nodule
117 2857509624 Bradyrhizobium sp. R-73088 Isolate Unclassified
118 2881665667 Bradyrhizobium vignae LMG 28791 Isolate Unclassified
119 2885366525 Bradyrhizobium sp. LVM 105 Isolate Unclassified
120 2888388044 Bradyrhizobium cosmicum 58S1 Isolate Unclassified
121 2906610324
122 2906643746 Bradyrhizobium genosp. SA-3 Rp7b Isolate Unclassified
123 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
124 2932801729 Bradyrhizobium sp. S3.3.6 Isolate Nodule
125 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
126 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
127 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
128 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
129 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
130 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
131 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
132 2941531003 Bradyrhizobium sp. LB11.1 Isolate Nodule
133 3005718088 Bradyrhizobium sp. CCBAU 53338 Isolate Nodule
134 8016583857 Bradyrhizobium sp. LM2.7 Isolate Nodule
135 8019555841 Bradyrhizobium sp. JR6.1 Isolate Nodule
136 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule
137 8019648815 Bradyrhizobium sp. GM24.11 Isolate Nodule
138 8056967851 Bradyrhizobium zhengyangense WYCCWR 12678 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 69.05
Metatranscriptomes 4.76
Isolates 26.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 24.85
Nodule 24.85
Rhizoplane 2.96
Rhizosphere 33.73
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207426_1000596 3300025302 Bacteria 47621
2 JGI25165J46597_1003867 3300003214 Bacteria 3476
3 Ga0006770J48903_1016718 3300003305 Bacteria 1804
4 Ga0007410J51695_1015205 3300003574 Bacteria 1757
5 Ga0055543_1003997 3300004625 Bacteria 4145
6 Ga0065165_1007747 3300005262 Bacteria 5194
7 Ga0070660_100121394 3300005339 Bacteria 2085
8 Ga0070713_100078204 3300005436 Bacteria 2815
9 Ga0068856_100167806 3300005614 Bacteria 2206
10 Ga0068852_100130767 3300005616 Bacteria 2311
11 Ga0081540_1010460 3300005983 Bacteria 6279
12 Ga0081540_1031443 3300005983 Bacteria 2918
13 Ga0075369_10016278 3300006186 Bacteria 2998
14 Ga0075434_100182165 3300006871 Bacteria 2121
15 Ga0099825_1029315 3300006941 Bacteria 2569
16 Ga0099825_1035575 3300006941 Bacteria 1770
17 Ga0099824_1009504 3300006942 Bacteria 11940
18 Ga0099822_1018175 3300006943 Bacteria 7361
19 Ga0105238_10154204 3300009551 Bacteria 2272
20 Ga0214544_1001102 3300021320 Bacteria 54570
21 Ga0214542_1001818 3300021321 Bacteria 44104
22 Ga0209677_100889 3300025253 Bacteria 14651
23 Ga0209233_1001977 3300025261 Bacteria 7782
24 Ga0209455_1005927 3300025272 Bacteria 3685
25 Ga0209564_1002681 3300025295 Bacteria 13500
26 Ga0209758_1000100 3300025297 Bacteria 227948
27 Ga0209758_1000553 3300025297 Bacteria 59265
28 Ga0209758_1004912 3300025297 Bacteria 10748
29 Ga0209758_1004969 3300025297 Bacteria 10633
30 Ga0209256_1009837 3300025299 Bacteria 4114
31 Ga0209256_1012620 3300025299 Bacteria 3208
32 Ga0207426_1000237 3300025302 Bacteria 124707
33 Ga0207426_1002476 3300025302 Bacteria 11751
34 Ga0209257_1003884 3300025304 Bacteria 12195
35 Ga0207692_10059385 3300025898 Bacteria 1975
36 Ga0207699_10054489 3300025906 Bacteria 2376
37 Ga0207671_10010817 3300025914 Bacteria 7487
38 Ga0209389_1032114 3300027296 Bacteria 4371
39 Ga0209589_1003816 3300027357 Bacteria 26258
40 Ga0209589_1011904 3300027357 Bacteria 12032
41 Ga0209589_1024981 3300027357 Bacteria 4428
42 Ga0209489_100105 3300027361 Bacteria 118979
43 Ga0209489_109495 3300027361 Bacteria 12032
44 Ga0209489_115539 3300027361 Bacteria 4576
45 Ga0209700_100138 3300027363 Bacteria 111133
46 Ga0209700_109030 3300027363 Bacteria 12032
47 Ga0265326_10000801 3300028558 Bacteria 11638
48 Ga0265334_10001682 3300028573 Bacteria 10568
49 Ga0265323_10001311 3300028653 Bacteria 12382
50 Ga0265336_10000188 3300028666 Bacteria 43129
51 Ga0265338_10000393 3300028800 Bacteria 78303
52 Ga0265324_10000885 3300029957 Bacteria 19065
53 Ga0265330_10025269 3300031235 Bacteria 2693
54 Ga0307516_10018016 3300031730 Bacteria 7347
55 Ga0436364_0934233 3300037853 Bacteria 2374
56 Ga0436365_1743369 3300039437 Bacteria 4710
57 Ga0466972_0000389 3300044658 Bacteria 23455
58 Ga0466972_0014195 3300044658 Bacteria 3992
59 Ga0466966_0001560 3300044684 Bacteria 14713
60 Ga0466966_0026929 3300044684 Bacteria 3749
61 Ga0466961_0000009 3300044693 Bacteria 139001
62 Ga0466961_0000064 3300044693 Bacteria 63553
63 Ga0466963_0035422 3300044694 Bacteria 3252
64 Ga0466968_0007231 3300044735 Bacteria 4218
65 Ga0466960_0014221 3300044901 Bacteria 3400
66 Ga0466967_0126779 3300045976 Bacteria 2365
67 Ga0466967_0155042 3300045976 Bacteria 2144
68 Ga0495629_0026366 3300046459 Bacteria 4128
69 Ga0495583_0010633 3300046506 Bacteria 5351
70 Ga0495606_0019680 3300046507 Bacteria 5009
71 Ga0495606_0020084 3300046507 Bacteria 4939
72 Ga0495648_0009329 3300046524 Bacteria 7622
73 Ga0495648_0010442 3300046524 Bacteria 7073
74 Ga0495652_0169120 3300046529 Bacteria 1689
75 Ga0495622_0012852 3300046557 Bacteria 3882
76 Ga0495635_0016748 3300046663 Bacteria 5121
77 Ga0495671_0071299 3300046692 Bacteria 1707
78 Ga0495649_0081757 3300046694 Bacteria 1727
79 Ga0495604_0023066 3300047317 Bacteria 4966
80 Ga0495604_0053394 3300047317 Bacteria 3123
81 Ga0495676_0077416 3300047321 Bacteria 2536
82 Ga0495686_0089742 3300047472 Bacteria 1867
83 Ga0495602_0032201 3300048088 Bacteria 4941
84 Ga0495602_0167887 3300048088 Bacteria 1706
85 Ga0495626_0047129 3300048091 Bacteria 2005
86 Ga0496104_0013312 3300048907 Bacteria 7413
87 Ga0496105_0001479 3300048908 Bacteria 16579
88 Ga0496105_0007135 3300048908 Bacteria 8619
89 Ga0496111_0174055 3300048914 Bacteria 1600
90 Ga0496112_0088982 3300048915 Bacteria 3055
91 Ga0496117_0041895 3300048920 Bacteria 3348
92 Ga0496119_0062766 3300048922 Bacteria 2212
93 Ga0496120_0037673 3300048923 Bacteria 2867
94 Ga0496125_0096997 3300048928 Bacteria 2186
95 nmdc:mga00v17_62090_c1 3300050491 Bacteria 2298
96 nmdc:mga0yw44_44544_c1 3300050492 Bacteria 2654
97 nmdc:mga07m45_10017_c1 3300050496 Bacteria 4934
98 nmdc:mga0sz30_19776_c1 3300050516 Bacteria 2709
99 Ga0500578_0009917 3300053086 Bacteria 6183
100 Ga0500578_0034378 3300053086 Bacteria 3257
101 Ga0500566_0003061 3300053094 Bacteria 9992
102 Ga0500557_000001 3300053105 Bacteria 241298
103 Ga0500557_000018 3300053105 Bacteria 95477
104 Ga0500562_002320 3300053108 Bacteria 4773
105 Ga0500572_001430 3300053111 Bacteria 6550
106 Ga0500595_008828 3300053119 Bacteria 4096
107 Ga0500642_0000069 3300053130 Bacteria 55916
108 Ga0500642_0000170 3300053130 Bacteria 26891
109 Ga0500559_0000036 3300053136 Bacteria 110748
110 Ga0500559_0001195 3300053136 Bacteria 15435
111 Ga0500622_0009995 3300053156 Bacteria 5232
112 Ga0500633_0005877 3300053160 Bacteria 2959
113 Ga0500638_015238 3300053162 Bacteria 3523
114 Ga0500639_008948 3300053163 Bacteria 5222
115 Ga0500576_048243 3300053725 Bacteria 1896
116 Ga0500599_000748 3300053736 Bacteria 3548
117 Ga0500601_000431 3300053737 Bacteria 6929
118 Ga0500601_000518 3300053737 Bacteria 5826
119 Ga0587084_003737 3300059477 Bacteria 1694
120 Ga0587093_002520 3300059478 Bacteria 1714
121 Ga0587082_005114 3300059504 Bacteria 1689
122 Ga0587067_006842 3300059640 Bacteria 1607
123 Ga0587078_002917 3300059646 Bacteria 1689
124 Ga0587111_0006574 3300060346 Bacteria 1851
125 2507506451 2507262055 Bacteria 8048963
126 2508543539 2508501009 Bacteria 7784016
127 2511395245 2511231028 Bacteria 8046582
128 2511399915 2511231028 Bacteria 8046582
129 2513638060 2513237094 Bacteria 8789602
130 2513643439 2513237094 Bacteria 8789602
131 2513703095 2513237102 Bacteria 7703324
132 2524439742 2524023205 Bacteria 8918781
133 2745078952 2744054633 Bacteria 8678936
134 2793064750 2791355196 Bacteria 7323613
135 2824608083 2824600985 Bacteria 8488197
136 2824611436 2824609381 Bacteria 8672835
137 2824622933 2824617872 Bacteria 8814715
138 2824630739 2824626560 Bacteria 8813858
139 2824639547 2824635225 Bacteria 8785348
140 2824651325 2824644064 Bacteria 8743947
141 2824721759 2824714736 Bacteria 8717648
142 2824729921 2824723954 Bacteria 8758240
143 2841959039 2841957949 Bacteria 8652217
144 2847940582 2847939898 Bacteria 8606328
145 2849080077 2849076700 Bacteria 7039503
146 2857510467 2857509624 Bacteria 7472071
147 2881672838 2881665667 Bacteria 8175609
148 2885373385 2885366525 Bacteria 8326213
149 2888389449 2888388044 Bacteria 7304136
150 2906615750
151 2906649900 2906643746 Bacteria 8722424
152 2932796357 2932794094 Bacteria 7915132
153 2932801163 2932794094 Bacteria 7915132
154 2932804336 2932801729 Bacteria 7987968
155 2935638004 2935630451 Bacteria 8169952
156 2935647333 2935638405 Bacteria 10015038
157 2935836778 2935827899 Bacteria 10038562
158 2935888749 2935883170 Bacteria 7964738
159 2941514646 2941507105 Bacteria 8166816
160 2941522610 2941515067 Bacteria 8166720
161 2941530552 2941523033 Bacteria 8169134
162 2941538197 2941531003 Bacteria 7653939
163 3005721477 3005718088 Bacteria 8283608
164 3005721564 3005718088 Bacteria 8283608
165 8016593691 8016583857 Bacteria 10421953
166 8019564658 8019555841 Bacteria 9642137
167 8019574748 8019565922 Bacteria 9639779
168 8019657372 8019648815 Bacteria 10014479
169 8056968327 8056967851 Bacteria 9038162
170 Ga0207426_1000596
171 JGI25165J46597_1003867
172 Ga0006770J48903_1016718
173 Ga0007410J51695_1015205
174 Ga0055543_1003997
175 Ga0065165_1007747
176 Ga0070660_100121394
177 Ga0070713_100078204
178 Ga0068856_100167806
179 Ga0068852_100130767
180 Ga0081540_1010460
181 Ga0081540_1031443
182 Ga0075369_10016278
183 Ga0075434_100182165
184 Ga0099825_1029315
185 Ga0099825_1035575
186 Ga0099824_1009504
187 Ga0099822_1018175
188 Ga0105238_10154204
189 Ga0214544_1001102
190 Ga0214542_1001818
191 Ga0209677_100889
192 Ga0209233_1001977
193 Ga0209455_1005927
194 Ga0209564_1002681
195 Ga0209758_1000100
196 Ga0209758_1000553
197 Ga0209758_1004912
198 Ga0209758_1004969
199 Ga0209256_1009837
200 Ga0209256_1012620
201 Ga0207426_1000237
202 Ga0207426_1002476
203 Ga0209257_1003884
204 Ga0207692_10059385
205 Ga0207699_10054489
206 Ga0207671_10010817
207 Ga0209389_1032114
208 Ga0209589_1003816
209 Ga0209589_1011904
210 Ga0209589_1024981
211 Ga0209489_100105
212 Ga0209489_109495
213 Ga0209489_115539
214 Ga0209700_100138
215 Ga0209700_109030
216 Ga0265326_10000801
217 Ga0265334_10001682
218 Ga0265323_10001311
219 Ga0265336_10000188
220 Ga0265338_10000393
221 Ga0265324_10000885
222 Ga0265330_10025269
223 Ga0307516_10018016
224 Ga0436364_0934233
225 Ga0436365_1743369
226 Ga0466972_0000389
227 Ga0466972_0014195
228 Ga0466966_0001560
229 Ga0466966_0026929
230 Ga0466961_0000009
231 Ga0466961_0000064
232 Ga0466963_0035422
233 Ga0466968_0007231
234 Ga0466960_0014221
235 Ga0466967_0126779
236 Ga0466967_0155042
237 Ga0495629_0026366
238 Ga0495583_0010633
239 Ga0495606_0019680
240 Ga0495606_0020084
241 Ga0495648_0009329
242 Ga0495648_0010442
243 Ga0495652_0169120
244 Ga0495622_0012852
245 Ga0495635_0016748
246 Ga0495671_0071299
247 Ga0495649_0081757
248 Ga0495604_0023066
249 Ga0495604_0053394
250 Ga0495676_0077416
251 Ga0495686_0089742
252 Ga0495602_0032201
253 Ga0495602_0167887
254 Ga0495626_0047129
255 Ga0496104_0013312
256 Ga0496105_0001479
257 Ga0496105_0007135
258 Ga0496111_0174055
259 Ga0496112_0088982
260 Ga0496117_0041895
261 Ga0496119_0062766
262 Ga0496120_0037673
263 Ga0496125_0096997
264 nmdc:mga00v17_62090_c1
265 nmdc:mga0yw44_44544_c1
266 nmdc:mga07m45_10017_c1
267 nmdc:mga0sz30_19776_c1
268 Ga0500578_0009917
269 Ga0500578_0034378
270 Ga0500566_0003061
271 Ga0500557_000001
272 Ga0500557_000018
273 Ga0500562_002320
274 Ga0500572_001430
275 Ga0500595_008828
276 Ga0500642_0000069
277 Ga0500642_0000170
278 Ga0500559_0000036
279 Ga0500559_0001195
280 Ga0500622_0009995
281 Ga0500633_0005877
282 Ga0500638_015238
283 Ga0500639_008948
284 Ga0500576_048243
285 Ga0500599_000748
286 Ga0500601_000431
287 Ga0500601_000518
288 Ga0587084_003737
289 Ga0587093_002520
290 Ga0587082_005114
291 Ga0587067_006842
292 Ga0587078_002917
293 Ga0587111_0006574
294 2507506451
295 2508543539
296 2511395245
297 2511399915
298 2513638060
299 2513643439
300 2513703095
301 2524439742
302 2745078952
303 2793064750
304 2824608083
305 2824611436
306 2824622933
307 2824630739
308 2824639547
309 2824651325
310 2824721759
311 2824729921
312 2841959039
313 2847940582
314 2849080077
315 2857510467
316 2881672838
317 2885373385
318 2888389449
319 2906615750
320 2906649900
321 2932796357
322 2932801163
323 2932804336
324 2935638004
325 2935647333
326 2935836778
327 2935888749
328 2941514646
329 2941522610
330 2941530552
331 2941538197
332 3005721477
333 3005721564
334 8016593691
335 8019564658
336 8019574748
337 8019657372
338 8056968327

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02530

Porin_2

Porin subfamily

25

545

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4aui-assembly1.cif.gz_C structure and function of the porb porin from disseminating n. gonorrhoeae 0.6765 56 511
4aui-assembly1.cif.gz_C structure and function of the porb porin from disseminating n. gonorrhoeae 0.6725 56 511
1gfm-assembly1.cif.gz_A ompf porin (mutant d113g) 0.6558 49 511
1pho-assembly1.cif.gz_A crystal structures explain functional properties of two e. coli porins 0.6522 49 511
1e54-assembly1.cif.gz_A anion-selective porin from comamonas acidovorans 0.6502 54 511
ID Description Score Start End Superfamily
4auiC00 Mainly Beta;Beta Barrel;Porin;Porin 0.6765 56 511 2.40.160.10
4auiC00 Mainly Beta;Beta Barrel;Porin;Porin 0.6725 56 511 2.40.160.10
1e54A00 Mainly Beta;Beta Barrel;Porin;Porin 0.6484 56 511 2.40.160.10
1nrfA00 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.6466 444 509 3.40.710.10
1e54A00 Mainly Beta;Beta Barrel;Porin;Porin 0.6432 56 511 2.40.160.10
ID Description Score Start End GO Terms
AF-A0A7Y4GZ44-F1-model_v4 Porin 0.9198 59 511 GO:0006811
GO:0009279
GO:0015288
GO:0046930
AF-A0A7T7Z6Q2-F1-model_v4 deleted 0.9191 40 511
AF-A0A7Y4GZ44-F1-model_v4 Porin 0.9158 59 511 GO:0006811
GO:0009279
GO:0015288
GO:0046930
AF-A0A7T7Z6Q2-F1-model_v4 deleted 0.9115 40 511
AF-A0A7W6T3M4-F1-model_v4 Porin 0.8947 332 511 GO:0006811
GO:0009279
GO:0015288
GO:0046930

Map