F254260

General Info

Members Datasets Scaffolds Average Seq Length
169 146 338 374

Family's Representative Sequence

Representative Sequence 3300005468|Ga0070707_100131204|Ga0070707_1001312043
Length 408
Sequence MKFIIMSDTASLLSLMRWNWQQPDWPRFTWRKSRLAQAEQQFLVGAGTLVGAVKHVGGEERDQITIETISTEAVTTSEIEGEILDRASVQSSIRRQFGLATENRRVGPAEQGIAEMMVDLYHSFAAPLSGEMLCAWHRMLVSGRRDLKDVGRYRTSGGPMQVVSGAIDEPKVHFEAPPSLRVASEMTRFITWFNGTGPGGAEPLLALTRAGMAHLYFESIHPFEDGNGRIGRALAEKSLAQNLGQPTLTALAATILAKRKSYYGALEAANRGNEITNWLAWFAGVAIEAQRRTVELVEFLIDKTKLLDGLRGEINHRQEKALLRMFREGPEGFAGGLSAGKYATITGASPATATRDLVALVEKGALIRTGERKHARYQLSIPLRTAPHVTITEQGEVVQAGSKGVVHG

Samples

Sample ID Description Type Environment
1 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
2 2162886012 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
21 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
22 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
23 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
24 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
27 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
28 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
31 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
32 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
35 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
39 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
40 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
44 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
50 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
69 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
70 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
71 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
72 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
73 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
74 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
75 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
76 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
77 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
78 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
79 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
80 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
81 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
82 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
85 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
86 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
89 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
90 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
91 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
92 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
93 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
94 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
95 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
96 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
97 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
98 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
99 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
100 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
101 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
102 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
103 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
104 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
105 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
106 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
107 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
108 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
109 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
110 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
111 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
112 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
113 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
116 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
117 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
118 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
119 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
120 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
122 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
123 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
124 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
125 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
126 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
127 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
128 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
129 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
130 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
131 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
132 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
133 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
134 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
135 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
136 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
137 3300053159 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 endosphere Metagenome Endosphere
138 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
139 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
140 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
141 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
142 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
143 2585427594 Rhizobium sp. YR528 Isolate Rhizosphere
144 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
145 2904578770 Phyllobacterium sp. 586 Isolate Unclassified
146 2919119836 Phyllobacterium sp. 1468 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.63
Metatranscriptomes 0
Isolates 2.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.06
Nodule 0
Rhizoplane 8.88
Rhizosphere 76.92
Stem 0
Stem Tuber 0
Unclassified 6.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070707_100131204 3300005468 Bacteria 2436
2 MBSR1b_contig_1244024 2162886012 Bacteria 1289
3 JGI25406J46586_10000096 3300003203 Bacteria 39663
4 rootH2_10035265 3300003320 Bacteria 1670
5 rootH1_10335363 3300003323 Bacteria 1515
6 Ga0070658_10008614 3300005327 Bacteria 8200
7 Ga0070680_100071720 3300005336 Unclassified 2846
8 Ga0070682_100120841 3300005337 Unclassified 1758
9 Ga0068868_100089928 3300005338 Bacteria 2472
10 Ga0070660_100066970 3300005339 Bacteria 2797
11 Ga0070688_100061111 3300005365 Bacteria 2381
12 Ga0070713_100045730 3300005436 Bacteria 3589
13 Ga0070711_100096764 3300005439 Bacteria 2139
14 Ga0070708_100183155 3300005445 Bacteria 1958
15 Ga0070708_100330889 3300005445 Unclassified 1435
16 Ga0070681_10035577 3300005458 Bacteria 5003
17 Ga0070697_100127029 3300005536 Bacteria 2136
18 Ga0070665_100260008 3300005548 Bacteria 1737
19 Ga0068855_100254898 3300005563 Bacteria 1956
20 Ga0068854_100132274 3300005578 Bacteria 1906
21 Ga0068860_100292825 3300005843 Bacteria 1593
22 Ga0068862_100174651 3300005844 Bacteria 1925
23 Ga0081539_10000051 3300005985 Bacteria 268337
24 Ga0081539_10021263 3300005985 Bacteria 4343
25 Ga0070717_10038308 3300006028 Bacteria 3897
26 Ga0070717_10158094 3300006028 Bacteria 1965
27 Ga0070716_100197197 3300006173 Bacteria 1335
28 Ga0070712_100021017 3300006175 Bacteria 4280
29 Ga0075430_100080694 3300006846 Bacteria 2725
30 Ga0075431_100000020 3300006847 Bacteria 82958
31 Ga0068865_100290734 3300006881 Bacteria 1304
32 Ga0099794_10000407 3300007265 Bacteria 14455
33 Ga0099794_10001786 3300007265 Bacteria 7674
34 Ga0099795_10000221 3300007788 Bacteria 9899
35 Ga0105240_10023611 3300009093 Bacteria 8124
36 Ga0105240_10132915 3300009093 Bacteria 2982
37 Ga0105247_10102051 3300009101 Bacteria 1835
38 Ga0114129_10000437 3300009147 Bacteria 49415
39 Ga0105243_10166394 3300009148 Bacteria 1906
40 Ga0105241_10134482 3300009174 Bacteria 2006
41 Ga0105242_10108300 3300009176 Bacteria 2364
42 Ga0105242_10171970 3300009176 Unclassified 1905
43 Ga0105248_10029279 3300009177 Bacteria 6143
44 Ga0105237_10100270 3300009545 Bacteria 2887
45 Ga0105238_10178746 3300009551 Bacteria 2099
46 Ga0105238_10286059 3300009551 Bacteria 1631
47 Ga0099796_10000105 3300010159 Bacteria 13192
48 Ga0105239_10090939 3300010375 Bacteria 3367
49 Ga0105239_10434454 3300010375 Unclassified 1488
50 Ga0105246_10124126 3300011119 Bacteria 1918
51 Ga0157370_10046973 3300013104 Bacteria 4139
52 Ga0157369_10147088 3300013105 Bacteria 2491
53 Ga0157378_10003857 3300013297 Bacteria 13263
54 Ga0163162_10200480 3300013306 Bacteria 2124
55 Ga0157372_10010690 3300013307 Bacteria 9766
56 Ga0157372_10045315 3300013307 Bacteria 4878
57 Ga0157375_10099994 3300013308 Bacteria 2980
58 Ga0157379_10150626 3300014968 Bacteria 2098
59 Ga0207710_10029194 3300025900 Bacteria 2398
60 Ga0207705_10020643 3300025909 Bacteria 4704
61 Ga0207654_10104992 3300025911 Bacteria 1747
62 Ga0207707_10050107 3300025912 Bacteria 3638
63 Ga0207695_10029847 3300025913 Bacteria 6016
64 Ga0207695_10167393 3300025913 Bacteria 2125
65 Ga0207671_10266287 3300025914 Bacteria 1349
66 Ga0207646_10099414 3300025922 Bacteria 2607
67 Ga0207700_10009788 3300025928 Bacteria 6011
68 Ga0207704_10313176 3300025938 Bacteria 1208
69 Ga0207667_10179409 3300025949 Bacteria 2175
70 Ga0207712_10087110 3300025961 Bacteria 2289
71 Ga0207677_10209120 3300026023 Bacteria 1557
72 Ga0207639_10276454 3300026041 Bacteria 1475
73 Ga0209179_1004686 3300027512 Bacteria 2085
74 Ga0209588_1000297 3300027671 Bacteria 13055
75 Ga0209588_1001119 3300027671 Bacteria 6901
76 Ga0268266_10000349 3300028379 Bacteria 71878
77 Ga0268265_10178109 3300028380 Bacteria 1824
78 Ga0268264_10277952 3300028381 Bacteria 1567
79 Ga0265331_10065332 3300031250 Bacteria 1711
80 Ga0265327_10000642 3300031251 Bacteria 56704
81 Ga0265316_10122024 3300031344 Bacteria 1968
82 Ga0307508_10000013 3300031616 Bacteria 242867
83 Ga0265314_10001992 3300031711 Bacteria 21668
84 Ga0265342_10150072 3300031712 Unclassified 1294
85 Ga0307516_10004452 3300031730 Bacteria 17275
86 Ga0307516_10008223 3300031730 Bacteria 11850
87 Ga0307507_10006354 3300033179 Bacteria 18224
88 Ga0373923_0014286 3300035111 Unclassified 2981
89 Ga0373936_0046755 3300035113 Bacteria 1745
90 Ga0373936_0097809 3300035113 Bacteria 1236
91 Ga0373953_0036706 3300035117 Bacteria 1931
92 Ga0373954_0008407 3300035118 Bacteria 4528
93 Ga0373956_0072335 3300035119 Bacteria 1574
94 Ga0373955_0012066 3300035172 Bacteria 4143
95 Ga0373924_0007529 3300035410 Bacteria 3935
96 Ga0373931_0020578 3300035691 Bacteria 3302
97 Ga0373927_0020444 3300035695 Bacteria 4340
98 Ga0373933_0012930 3300035724 Bacteria 4617
99 Ga0373937_0061857 3300036401 Bacteria 3441
100 Ga0436361_0595129 3300039447 Unclassified 2530
101 Ga0436361_1196822 3300039447 Bacteria 10284
102 Ga0495590_0011690 3300046457 Bacteria 3278
103 Ga0495580_0157765 3300046472 Bacteria 1571
104 Ga0495582_0014869 3300046473 Bacteria 4277
105 Ga0495639_0023537 3300046475 Bacteria 2709
106 Ga0495583_0022048 3300046506 Bacteria 3261
107 Ga0495665_0138582 3300046531 Bacteria 1272
108 Ga0495640_0087725 3300046533 Bacteria 2057
109 Ga0495645_0075082 3300046543 Unclassified 2433
110 Ga0495645_0178215 3300046543 Bacteria 1458
111 Ga0495667_0009456 3300046559 Bacteria 6604
112 Ga0495667_0012838 3300046559 Bacteria 5676
113 Ga0495625_0022611 3300046660 Bacteria 4817
114 Ga0495625_0106490 3300046660 Bacteria 1920
115 Ga0495658_0103406 3300046683 Bacteria 1703
116 Ga0495613_0036784 3300046689 Bacteria 3630
117 Ga0495674_0160035 3300047319 Bacteria 1884
118 Ga0495672_0085752 3300047320 Bacteria 1744
119 Ga0495680_0002977 3300047322 Bacteria 16923
120 Ga0495680_0069418 3300047322 Bacteria 2689
121 Ga0495684_0097070 3300047471 Bacteria 2230
122 Ga0495686_0116908 3300047472 Bacteria 1594
123 Ga0496101_0173852 3300048904 Bacteria 1656
124 Ga0496102_0075521 3300048905 Bacteria 3098
125 Ga0496104_0043825 3300048907 Bacteria 4202
126 Ga0496105_0020577 3300048908 Bacteria 5333
127 Ga0496106_0014541 3300048909 Bacteria 5815
128 Ga0496106_0210487 3300048909 Bacteria 1549
129 Ga0496108_0049738 3300048911 Bacteria 3506
130 Ga0496109_0122495 3300048912 Bacteria 2423
131 Ga0496110_0069468 3300048913 Bacteria 3119
132 Ga0496111_0070114 3300048914 Bacteria 2549
133 Ga0496112_0350161 3300048915 Bacteria 1419
134 Ga0496113_0038814 3300048916 Bacteria 3502
135 Ga0496114_0251705 3300048917 Bacteria 1554
136 Ga0496115_0239230 3300048918 Bacteria 1496
137 Ga0496115_0395997 3300048918 Unclassified 1121
138 Ga0501073_0062450 3300049589 Bacteria 2599
139 Ga0501077_0018015 3300049593 Bacteria 4464
140 Ga0501035_0169559 3300049822 Bacteria 1886
141 Ga0501044_0253838 3300049823 Bacteria 1698
142 nmdc:mga05p37_481_c1 3300050507 Bacteria 43634
143 nmdc:mga09592_1486_c1 3300050508 Bacteria 18853
144 nmdc:mga0qj67_16642_c1 3300050509 Bacteria 5580
145 nmdc:mga06r32_32_c1 3300050510 Bacteria 83882
146 nmdc:mga08y16_1157_c1 3300050511 Bacteria 25991
147 Ga0495619_0080669 3300053085 Bacteria 2190
148 Ga0500566_0000016 3300053094 Bacteria 102316
149 Ga0500640_000539 3300053095 Bacteria 9591
150 Ga0500572_003901 3300053111 Bacteria 3392
151 Ga0500595_000835 3300053119 Bacteria 17608
152 Ga0500595_014981 3300053119 Bacteria 2925
153 Ga0500608_004250 3300053122 Bacteria 5515
154 Ga0500608_006396 3300053122 Bacteria 4791
155 Ga0500614_001107 3300053123 Bacteria 6659
156 Ga0500642_0004173 3300053130 Bacteria 4480
157 Ga0500559_0003662 3300053136 Bacteria 7510
158 Ga0500616_0006792 3300053153 Bacteria 7410
159 Ga0500616_0068652 3300053153 Unclassified 1815
160 Ga0500630_000187 3300053159 Bacteria 23623
161 Ga0500638_018673 3300053162 Bacteria 3239
162 Ga0500639_000442 3300053163 Bacteria 20814
163 Ga0500637_0000703 3300053178 Bacteria 13332
164 Ga0500661_000640 3300055283 Bacteria 6532
165 Ga0501082_0000532 3300060353 Bacteria 33889
166 2585846861 2585427594 Bacteria 6180594
167 2898796269 2898795034 Bacteria 4294459
168 2904583769 2904578770 Bacteria 5302906
169 2919124338 2919119836 Bacteria 5208557
170 Ga0070707_100131204
171 MBSR1b_contig_1244024
172 JGI25406J46586_10000096
173 rootH2_10035265
174 rootH1_10335363
175 Ga0070658_10008614
176 Ga0070680_100071720
177 Ga0070682_100120841
178 Ga0068868_100089928
179 Ga0070660_100066970
180 Ga0070688_100061111
181 Ga0070713_100045730
182 Ga0070711_100096764
183 Ga0070708_100183155
184 Ga0070708_100330889
185 Ga0070681_10035577
186 Ga0070697_100127029
187 Ga0070665_100260008
188 Ga0068855_100254898
189 Ga0068854_100132274
190 Ga0068860_100292825
191 Ga0068862_100174651
192 Ga0081539_10000051
193 Ga0081539_10021263
194 Ga0070717_10038308
195 Ga0070717_10158094
196 Ga0070716_100197197
197 Ga0070712_100021017
198 Ga0075430_100080694
199 Ga0075431_100000020
200 Ga0068865_100290734
201 Ga0099794_10000407
202 Ga0099794_10001786
203 Ga0099795_10000221
204 Ga0105240_10023611
205 Ga0105240_10132915
206 Ga0105247_10102051
207 Ga0114129_10000437
208 Ga0105243_10166394
209 Ga0105241_10134482
210 Ga0105242_10108300
211 Ga0105242_10171970
212 Ga0105248_10029279
213 Ga0105237_10100270
214 Ga0105238_10178746
215 Ga0105238_10286059
216 Ga0099796_10000105
217 Ga0105239_10090939
218 Ga0105239_10434454
219 Ga0105246_10124126
220 Ga0157370_10046973
221 Ga0157369_10147088
222 Ga0157378_10003857
223 Ga0163162_10200480
224 Ga0157372_10010690
225 Ga0157372_10045315
226 Ga0157375_10099994
227 Ga0157379_10150626
228 Ga0207710_10029194
229 Ga0207705_10020643
230 Ga0207654_10104992
231 Ga0207707_10050107
232 Ga0207695_10029847
233 Ga0207695_10167393
234 Ga0207671_10266287
235 Ga0207646_10099414
236 Ga0207700_10009788
237 Ga0207704_10313176
238 Ga0207667_10179409
239 Ga0207712_10087110
240 Ga0207677_10209120
241 Ga0207639_10276454
242 Ga0209179_1004686
243 Ga0209588_1000297
244 Ga0209588_1001119
245 Ga0268266_10000349
246 Ga0268265_10178109
247 Ga0268264_10277952
248 Ga0265331_10065332
249 Ga0265327_10000642
250 Ga0265316_10122024
251 Ga0307508_10000013
252 Ga0265314_10001992
253 Ga0265342_10150072
254 Ga0307516_10004452
255 Ga0307516_10008223
256 Ga0307507_10006354
257 Ga0373923_0014286
258 Ga0373936_0046755
259 Ga0373936_0097809
260 Ga0373953_0036706
261 Ga0373954_0008407
262 Ga0373956_0072335
263 Ga0373955_0012066
264 Ga0373924_0007529
265 Ga0373931_0020578
266 Ga0373927_0020444
267 Ga0373933_0012930
268 Ga0373937_0061857
269 Ga0436361_0595129
270 Ga0436361_1196822
271 Ga0495590_0011690
272 Ga0495580_0157765
273 Ga0495582_0014869
274 Ga0495639_0023537
275 Ga0495583_0022048
276 Ga0495665_0138582
277 Ga0495640_0087725
278 Ga0495645_0075082
279 Ga0495645_0178215
280 Ga0495667_0009456
281 Ga0495667_0012838
282 Ga0495625_0022611
283 Ga0495625_0106490
284 Ga0495658_0103406
285 Ga0495613_0036784
286 Ga0495674_0160035
287 Ga0495672_0085752
288 Ga0495680_0002977
289 Ga0495680_0069418
290 Ga0495684_0097070
291 Ga0495686_0116908
292 Ga0496101_0173852
293 Ga0496102_0075521
294 Ga0496104_0043825
295 Ga0496105_0020577
296 Ga0496106_0014541
297 Ga0496106_0210487
298 Ga0496108_0049738
299 Ga0496109_0122495
300 Ga0496110_0069468
301 Ga0496111_0070114
302 Ga0496112_0350161
303 Ga0496113_0038814
304 Ga0496114_0251705
305 Ga0496115_0239230
306 Ga0496115_0395997
307 Ga0501073_0062450
308 Ga0501077_0018015
309 Ga0501035_0169559
310 Ga0501044_0253838
311 nmdc:mga05p37_481_c1
312 nmdc:mga09592_1486_c1
313 nmdc:mga0qj67_16642_c1
314 nmdc:mga06r32_32_c1
315 nmdc:mga08y16_1157_c1
316 Ga0495619_0080669
317 Ga0500566_0000016
318 Ga0500640_000539
319 Ga0500572_003901
320 Ga0500595_000835
321 Ga0500595_014981
322 Ga0500608_004250
323 Ga0500608_006396
324 Ga0500614_001107
325 Ga0500642_0004173
326 Ga0500559_0003662
327 Ga0500616_0006792
328 Ga0500616_0068652
329 Ga0500630_000187
330 Ga0500638_018673
331 Ga0500639_000442
332 Ga0500637_0000703
333 Ga0500661_000640
334 Ga0501082_0000532
335 2585846861
336 2898796269
337 2904583769
338 2919124338

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13776

DUF4172

Domain of unknown function (DUF4172)

18

99

0.99

PF02661

Fic

Fic/DOC family

127

239

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
4hw0-assembly2.cif.gz_B crystal structure of sso10a-2, a dna-binding protein from sulfolobus solfataricus 0.9092 322 364
8cil-assembly1.cif.gz_B crystal structure of coxiella burnetii fic protein 2 0.8727 1 365
8b2l-assembly1.cif.gz_I1 cryo-em structure of the plant 80s ribosome 0.8698 324 365
7qiz-assembly1.cif.gz_ZA specific features and methylation sites of a plant 80s ribosome 0.8673 324 365
7ls2-assembly1.cif.gz_R3 80s ribosome from mouse bound to eef2 (class i) 0.864 324 364
ID Description Score Start End Superfamily
4hw0B00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9092 322 364 1.10.10.10
af_Q19519_316_383_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.891 322 365 1.10.10.10
2g7uC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8825 323 364 1.10.10.10
2g7uD01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8662 323 364 1.10.10.10
4lb5A00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.852 322 364 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A833CIP4-F1-model_v4 DUF4172 domain-containing protein 0.9897 300 367
AF-A0A3N5HVP0-F1-model_v4 Fic family protein 0.9896 1 294 GO:0005524
AF-A0A0F8ZBA8-F1-model_v4 Fido domain-containing protein 0.9883 1 286
AF-A0A0F3IPB6-F1-model_v4 Cell division protein Fic 0.987 1 261 GO:0005524
GO:0051301
AF-A0A257YA63-F1-model_v4 Fido domain-containing protein 0.9843 1 215

Map