F253198

General Info

Members Datasets Scaffolds Average Seq Length
168 74 168 346

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0000169|Ga0453684_0000169_260642_261718
Length 358
Sequence MAGANVQVNAAGLSKADYRGAPSTLCVGCGHNSIANQIISVCYEMNIVPENILKFSGIGCSSKSPTYFLNRTFGFNGLHGRMPSVATGALFADHSMRGLGVSGDGDSASIGMGQFKHLMRRNVNMVYIVENNGVYGLTKGQFSATADKGLALKKQGTNQYLPVDICMEAMASRATFVARLFAGNAKQVKEVLKAAMAHRGVAVLDIISPCVTFNNQENTYYSYDFGKANEEPLHDISFHQASEGGTSTISYVPPKPEITLEADMVEGEIREVTMHDGSAIILKTLEKGYDPTNRAEAIRVLEEASANNWLLTGLIYVDTTKPALTELHNLTDTPLNRLTEKELRPAPETMAKINAQMF

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
6 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
7 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
8 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
12 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
13 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006194 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
18 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
19 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
20 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
21 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
24 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
25 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
26 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
27 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
28 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
39 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
40 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
41 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
42 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
43 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
44 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
45 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
46 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
47 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
48 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
49 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
51 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
52 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
53 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
54 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
55 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
56 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
57 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
58 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
59 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
60 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
61 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
62 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
63 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
64 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
65 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
66 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
67 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
68 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
69 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
70 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
71 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
72 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
73 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
74 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.02
Metatranscriptomes 2.98
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 100
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3855837 2162886007 Bacteria 4821
2 JGI25406J46586_10009527 3300003203 Bacteria 4348
3 Ga0065704_10071980 3300005289 Bacteria 9462
4 Ga0065707_10000524 3300005295 Bacteria 33009
5 Ga0065707_10005264 3300005295 Bacteria 4529
6 Ga0065707_10097876 3300005295 Bacteria 3132
7 Ga0070710_10170768 3300005437 Bacteria 1355
8 Ga0070694_100142703 3300005444 Unclassified 1741
9 Ga0070707_100029177 3300005468 Bacteria 5252
10 Ga0070698_100084906 3300005471 Bacteria 3154
11 Ga0070698_100162930 3300005471 Bacteria 2173
12 Ga0070699_100085094 3300005518 Bacteria 2759
13 Ga0070679_100157073 3300005530 Bacteria 2249
14 Ga0070704_100065832 3300005549 Bacteria 2610
15 Ga0070704_100095973 3300005549 Bacteria 2222
16 Ga0068859_100052252 3300005617 Bacteria 4108
17 Ga0068859_100101652 3300005617 Bacteria 2932
18 Ga0068862_100037690 3300005844 Bacteria 4098
19 Ga0068862_100075147 3300005844 Bacteria 2922
20 Ga0081539_10003098 3300005985 Bacteria 21345
21 Ga0081539_10008095 3300005985 Bacteria 9296
22 Ga0075427_10000782 3300006194 Bacteria 3869
23 Ga0075428_100048642 3300006844 Bacteria 4654
24 Ga0075428_100085273 3300006844 Bacteria 3445
25 Ga0075430_100065065 3300006846 Bacteria 3063
26 Ga0075430_100219136 3300006846 Bacteria 1579
27 Ga0075431_100262607 3300006847 Bacteria 1752
28 Ga0075434_100035223 3300006871 Unclassified 4947
29 Ga0075429_100009127 3300006880 Bacteria 8607
30 Ga0075429_100059908 3300006880 Bacteria 3317
31 Ga0097620_100052256 3300006931 Bacteria 4108
32 Ga0097620_100101654 3300006931 Bacteria 2932
33 Ga0111539_10200010 3300009094 Bacteria 2330
34 Ga0105245_10194065 3300009098 Bacteria 1947
35 Ga0114129_10000357 3300009147 Bacteria 52960
36 Ga0114129_10008034 3300009147 Bacteria 15031
37 Ga0114129_10112071 3300009147 Bacteria 3763
38 Ga0114129_10152152 3300009147 Bacteria 3165
39 Ga0114129_10161665 3300009147 Bacteria 3058
40 Ga0114129_10262882 3300009147 Bacteria 2312
41 Ga0105243_10095981 3300009148 Bacteria 2452
42 Ga0105243_10186086 3300009148 Bacteria 1810
43 Ga0105249_10097616 3300009553 Bacteria 2758
44 Ga0105246_10156577 3300011119 Unclassified 1731
45 Ga0163162_10083493 3300013306 Bacteria 3268
46 Ga0163163_10245478 3300014325 Bacteria 1841
47 Ga0207684_10085320 3300025910 Bacteria 2690
48 Ga0207652_10126079 3300025921 Bacteria 2280
49 Ga0207646_10026230 3300025922 Bacteria 5320
50 Ga0207709_10075013 3300025935 Unclassified 2160
51 Ga0207712_10172826 3300025961 Bacteria 1690
52 Ga0207708_10062594 3300026075 Bacteria 2842
53 Ga0207674_10096321 3300026116 Bacteria 2944
54 Ga0207674_10476214 3300026116 Bacteria 1207
55 Ga0268265_10015574 3300028380 Bacteria 5206
56 Ga0265334_10061554 3300028573 Bacteria 1414
57 Ga0265338_10007441 3300028800 Bacteria 13593
58 Ga0265327_10018569 3300031251 Bacteria 4305
59 Ga0316579_10049042 3300031691 Unclassified 1973
60 Ga0265314_10069188 3300031711 Bacteria 2370
61 Ga0316576_10041619 3300031727 Bacteria 3309
62 Ga0316576_10051090 3300031727 Bacteria 3008
63 Ga0316576_10150461 3300031727 Bacteria 1754
64 Ga0316578_10004465 3300031728 Bacteria 6613
65 Ga0316578_10023778 3300031728 Bacteria 3432
66 Ga0316578_10077495 3300031728 Unclassified 1974
67 Ga0307405_10162167 3300031731 Bacteria 1585
68 Ga0316577_10002768 3300031733 Bacteria 8737
69 Ga0316577_10024923 3300031733 Unclassified 3327
70 Ga0316577_10053658 3300031733 Unclassified 2249
71 Ga0316577_10067617 3300031733 Bacteria 1994
72 Ga0316577_10090783 3300031733 Bacteria 1710
73 Ga0307406_10252734 3300031901 Bacteria 1329
74 Ga0316585_10020330 3300032137 Bacteria 2032
75 Ga0316593_10006532 3300032168 Bacteria 3153
76 Ga0316593_10013648 3300032168 Bacteria 2410
77 Ga0316593_10030734 3300032168 Unclassified 1746
78 Ga0316593_10037845 3300032168 Bacteria 1595
79 Ga0316592_1018455 3300033524 Bacteria 1469
80 Ga0316574_0004134 3300035398 Bacteria 7555
81 Ga0316574_0005625 3300035398 Bacteria 6702
82 Ga0316574_0021118 3300035398 Unclassified 3861
83 Ga0316574_0023186 3300035398 Bacteria 3704
84 Ga0316574_0023553 3300035398 Bacteria 3677
85 Ga0316582_0001816 3300036647 Bacteria 9645
86 Ga0316582_0032509 3300036647 Bacteria 3197
87 Ga0316582_0061442 3300036647 Bacteria 2410
88 Ga0316582_0207987 3300036647 Bacteria 1336
89 Ga0316582_0269498 3300036647 Unclassified 1168
90 Ga0316584_0000873 3300036712 Bacteria 17118
91 Ga0316584_0006306 3300036712 Bacteria 8032
92 Ga0316584_0007617 3300036712 Bacteria 7426
93 Ga0316584_0021620 3300036712 Unclassified 4679
94 Ga0316584_0028268 3300036712 Bacteria 4133
95 Ga0316584_0081005 3300036712 Unclassified 2431
96 Ga0451577_0002865 3300042876 Bacteria 19838
97 Ga0451577_0025354 3300042876 Bacteria 5380
98 Ga0451577_0094156 3300042876 Unclassified 2675
99 Ga0451577_0102056 3300042876 Bacteria 2563
100 Ga0451577_0131478 3300042876 Unclassified 2245
101 Ga0451577_0152472 3300042876 Unclassified 2080
102 Ga0453683_0001922 3300044673 Bacteria 16936
103 Ga0453683_0005841 3300044673 Bacteria 8520
104 Ga0453683_0030290 3300044673 Bacteria 3421
105 Ga0453683_0095770 3300044673 Bacteria 1862
106 Ga0453684_0000007 3300044712 Bacteria 1301482
107 Ga0453684_0000021 3300044712 Bacteria 873490
108 Ga0453684_0000023 3300044712 Bacteria 857153
109 Ga0453684_0000169 3300044712 Bacteria 289762
110 Ga0453684_0001972 3300044712 Bacteria 52694
111 Ga0453684_0002685 3300044712 Bacteria 42343
112 Ga0453684_0003383 3300044712 Bacteria 36067
113 Ga0453684_0005462 3300044712 Bacteria 25166
114 Ga0453684_0006020 3300044712 Bacteria 23482
115 Ga0453684_0006291 3300044712 Bacteria 22718
116 Ga0453684_0007072 3300044712 Bacteria 20965
117 Ga0453684_0009092 3300044712 Bacteria 17516
118 Ga0453684_0009518 3300044712 Bacteria 16987
119 Ga0453684_0010152 3300044712 Bacteria 16164
120 Ga0453684_0023734 3300044712 Bacteria 9009
121 Ga0453684_0025127 3300044712 Bacteria 8664
122 Ga0453684_0046741 3300044712 Bacteria 5752
123 Ga0453684_0053079 3300044712 Bacteria 5294
124 Ga0453684_0057848 3300044712 Bacteria 5013
125 Ga0453684_0078051 3300044712 Bacteria 4146
126 Ga0453684_0101085 3300044712 Bacteria 3528
127 Ga0453684_0104251 3300044712 Bacteria 3463
128 Ga0453684_0127030 3300044712 Unclassified 3067
129 Ga0453684_0144870 3300044712 Bacteria 2831
130 Ga0453684_0164032 3300044712 Bacteria 2625
131 Ga0453684_0165157 3300044712 Bacteria 2614
132 Ga0453684_0173585 3300044712 Bacteria 2538
133 Ga0453684_0187218 3300044712 Bacteria 2424
134 Ga0453684_0197157 3300044712 Bacteria 2350
135 Ga0453684_0243211 3300044712 Unclassified 2070
136 Ga0453684_0336594 3300044712 Bacteria 1705
137 Ga0453684_0455554 3300044712 Bacteria 1423
138 Ga0453684_0685055 3300044712 Bacteria 1115
139 Ga0451576_0000164 3300045051 Bacteria 168460
140 Ga0451576_0004311 3300045051 Bacteria 18582
141 Ga0451576_0045731 3300045051 Bacteria 4609
142 Ga0451576_0052429 3300045051 Bacteria 4274
143 Ga0451576_0100485 3300045051 Bacteria 3008
144 Ga0451576_0121564 3300045051 Bacteria 2719
145 Ga0451576_0246016 3300045051 Bacteria 1869
146 Ga0451576_0287329 3300045051 Bacteria 1719
147 Ga0451576_0501310 3300045051 Bacteria 1275
148 Ga0495665_0013306 3300046531 Bacteria 4452
149 Ga0495672_0076158 3300047320 Bacteria 1885
150 Ga0495675_0017877 3300047444 Bacteria 4495
151 Ga0501047_0048677 3300049581 Bacteria 4093
152 Ga0501073_0024002 3300049589 Bacteria 4379
153 Ga0501073_0218768 3300049589 Bacteria 1316
154 Ga0501079_0016987 3300049741 Bacteria 5558
155 Ga0501080_0080426 3300049742 Bacteria 3029
156 Ga0501081_0078935 3300049743 Bacteria 2302
157 Ga0501083_0024393 3300049744 Bacteria 4189
158 Ga0501045_0106306 3300049824 Bacteria 2080
159 nmdc:mga05p37_235892_c1 3300050507 Bacteria 2202
160 nmdc:mga05p37_25467_c1 3300050507 Bacteria 7195
161 nmdc:mga05p37_494_c1 3300050507 Bacteria 43235
162 nmdc:mga09592_14769_c1 3300050508 Bacteria 6374
163 nmdc:mga0qj67_282860_c1 3300050509 Bacteria 1344
164 nmdc:mga06r32_60212_c1 3300050510 Bacteria 3653
165 nmdc:mga0a205_213732_c1 3300050515 Bacteria 1816
166 Ga0501084_0003253 3300054114 Bacteria 13143
167 Ga0501084_0013124 3300054114 Bacteria 6855
168 Ga0501082_0291991 3300060353 Bacteria 1419

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0053079 Ga0453684_0053079_49_963 304
2 3300044712 Ga0453684_0685055 Ga0453684_0685055_107_1021 304
3 3300045051 Ga0451576_0287329 Ga0451576_0287329_702_1616 304
4 3300042876 Ga0451577_0094156 Ga0451577_0094156_1302_2354 308
5 3300044673 Ga0453683_0095770 Ga0453683_0095770_397_1449 308
6 3300036647 Ga0316582_0269498 Ga0316582_0269498_27_986 319
7 3300035398 Ga0316574_0005625 Ga0316574_0005625_2730_3695 321
8 3300036647 Ga0316582_0061442 Ga0316582_0061442_132_1097 321
9 3300044712 Ga0453684_0336594 Ga0453684_0336594_609_1691 322
10 3300044712 Ga0453684_0000021 Ga0453684_0000021_624970_626019 326
11 3300044712 Ga0453684_0006020 Ga0453684_0006020_91_1140 326
12 3300042876 Ga0451577_0102056 Ga0451577_0102056_370_1425 328
13 3300044712 Ga0453684_0006291 Ga0453684_0006291_14671_15720 328
14 3300031733 Ga0316577_10090783 Ga0316577_100907832 329
15 3300044712 Ga0453684_0002685 Ga0453684_0002685_24558_25607 331
16 3300032168 Ga0316593_10013648 Ga0316593_100136482 332
17 3300031728 Ga0316578_10023778 Ga0316578_100237782 334
18 3300033524 Ga0316592_1018455 Ga0316592_10184552 334
19 3300036647 Ga0316582_0032509 Ga0316582_0032509_372_1403 334
20 3300036712 Ga0316584_0006306 Ga0316584_0006306_6611_7642 334
21 3300032168 Ga0316593_10006532 Ga0316593_100065323 335
22 3300032168 Ga0316593_10030734 Ga0316593_100307342 335
23 3300036712 Ga0316584_0081005 Ga0316584_0081005_41_1090 335
24 3300031727 Ga0316576_10051090 Ga0316576_100510902 338
25 3300036712 Ga0316584_0028268 Ga0316584_0028268_2619_3641 338
26 3300031727 Ga0316576_10041619 Ga0316576_100416192 340
27 3300035398 Ga0316574_0023186 Ga0316574_0023186_2479_3507 340
28 3300031728 Ga0316578_10077495 Ga0316578_100774951 341
29 3300031733 Ga0316577_10024923 Ga0316577_100249231 341
30 3300036712 Ga0316584_0007617 Ga0316584_0007617_385_1410 341
31 3300031727 Ga0316576_10150461 Ga0316576_101504612 342
32 3300005437 Ga0070710_10170768 Ga0070710_101707682 343
33 3300005530 Ga0070679_100157073 Ga0070679_1001570732 343
34 3300005617 Ga0068859_100101652 Ga0068859_1001016522 343
35 3300006931 Ga0097620_100101654 Ga0097620_1001016542 343
36 3300009098 Ga0105245_10194065 Ga0105245_101940652 343
37 3300013306 Ga0163162_10083493 Ga0163162_100834932 343
38 3300014325 Ga0163163_10245478 Ga0163163_102454782 343
39 3300025921 Ga0207652_10126079 Ga0207652_101260792 343
40 3300028800 Ga0265338_10007441 Ga0265338_100074412 343
41 3300031691 Ga0316579_10049042 Ga0316579_100490422 343
42 3300031711 Ga0265314_10069188 Ga0265314_100691882 343
43 3300031728 Ga0316578_10004465 Ga0316578_100044657 343
44 3300031733 Ga0316577_10002768 Ga0316577_100027683 343
45 3300031733 Ga0316577_10053658 Ga0316577_100536582 343
46 3300031733 Ga0316577_10067617 Ga0316577_100676171 343
47 3300032137 Ga0316585_10020330 Ga0316585_100203302 343
48 3300032168 Ga0316593_10037845 Ga0316593_100378452 343
49 3300035398 Ga0316574_0004134 Ga0316574_0004134_5799_6833 343
50 3300035398 Ga0316574_0021118 Ga0316574_0021118_1207_2250 343
51 3300035398 Ga0316574_0023553 Ga0316574_0023553_1151_2194 343
52 3300036647 Ga0316582_0001816 Ga0316582_0001816_6844_7887 343
53 3300036647 Ga0316582_0207987 Ga0316582_0207987_220_1263 343
54 3300036712 Ga0316584_0000873 Ga0316584_0000873_8835_9878 343
55 3300036712 Ga0316584_0021620 Ga0316584_0021620_1329_2372 343
56 3300044712 Ga0453684_0000007 Ga0453684_0000007_217734_218783 343
57 3300046531 Ga0495665_0013306 Ga0495665_0013306_21_1076 343
58 3300047320 Ga0495672_0076158 Ga0495672_0076158_41_1096 343
59 3300047444 Ga0495675_0017877 Ga0495675_0017877_952_1998 343
60 3300049581 Ga0501047_0048677 Ga0501047_0048677_1299_2354 343
61 3300049589 Ga0501073_0024002 Ga0501073_0024002_2845_3900 343
62 3300049589 Ga0501073_0218768 Ga0501073_0218768_161_1204 343
63 3300049744 Ga0501083_0024393 Ga0501083_0024393_159_1214 343
64 3300054114 Ga0501084_0013124 Ga0501084_0013124_3933_4988 343
65 3300044712 Ga0453684_0001972 Ga0453684_0001972_27429_28481 344
66 3300044712 Ga0453684_0003383 Ga0453684_0003383_10380_11435 344
67 3300044712 Ga0453684_0005462 Ga0453684_0005462_10739_11788 344
68 3300044712 Ga0453684_0009092 Ga0453684_0009092_8268_9308 344
69 3300044712 Ga0453684_0101085 Ga0453684_0101085_345_1400 344
70 3300044712 Ga0453684_0197157 Ga0453684_0197157_776_1822 344
71 3300045051 Ga0451576_0052429 Ga0451576_0052429_2118_3164 344
72 3300054114 Ga0501084_0003253 Ga0501084_0003253_10438_11487 344
73 2162886007 SwRhRL2b_contig_3855837 SwRhRL2b_0549.00001760 345
74 3300003203 JGI25406J46586_10009527 JGI25406J46586_100095274 345
75 3300005289 Ga0065704_10071980 Ga0065704_100719809 345
76 3300005295 Ga0065707_10000524 Ga0065707_1000052427 345
77 3300005295 Ga0065707_10005264 Ga0065707_100052643 345
78 3300005295 Ga0065707_10097876 Ga0065707_100978762 345
79 3300005444 Ga0070694_100142703 Ga0070694_1001427031 345
80 3300005468 Ga0070707_100029177 Ga0070707_1000291773 345
81 3300005471 Ga0070698_100084906 Ga0070698_1000849062 345
82 3300005471 Ga0070698_100162930 Ga0070698_1001629302 345
83 3300005518 Ga0070699_100085094 Ga0070699_1000850943 345
84 3300005549 Ga0070704_100065832 Ga0070704_1000658322 345
85 3300005549 Ga0070704_100095973 Ga0070704_1000959733 345
86 3300005617 Ga0068859_100052252 Ga0068859_1000522523 345
87 3300005844 Ga0068862_100037690 Ga0068862_1000376902 345
88 3300005844 Ga0068862_100075147 Ga0068862_1000751472 345
89 3300005985 Ga0081539_10003098 Ga0081539_100030985 345
90 3300005985 Ga0081539_10008095 Ga0081539_1000809510 345
91 3300006194 Ga0075427_10000782 Ga0075427_100007823 345
92 3300006844 Ga0075428_100048642 Ga0075428_1000486424 345
93 3300006844 Ga0075428_100085273 Ga0075428_1000852734 345
94 3300006846 Ga0075430_100065065 Ga0075430_1000650652 345
95 3300006846 Ga0075430_100219136 Ga0075430_1002191362 345
96 3300006847 Ga0075431_100262607 Ga0075431_1002626072 345
97 3300006871 Ga0075434_100035223 Ga0075434_1000352234 345
98 3300006880 Ga0075429_100009127 Ga0075429_1000091272 345
99 3300006880 Ga0075429_100059908 Ga0075429_1000599082 345
100 3300006931 Ga0097620_100052256 Ga0097620_1000522563 345
101 3300009094 Ga0111539_10200010 Ga0111539_102000102 345
102 3300009147 Ga0114129_10000357 Ga0114129_1000035711 345
103 3300009147 Ga0114129_10008034 Ga0114129_100080344 345
104 3300009147 Ga0114129_10112071 Ga0114129_101120714 345
105 3300009147 Ga0114129_10152152 Ga0114129_101521524 345
106 3300009147 Ga0114129_10161665 Ga0114129_101616652 345
107 3300009147 Ga0114129_10262882 Ga0114129_102628822 345
108 3300009148 Ga0105243_10095981 Ga0105243_100959812 345
109 3300009148 Ga0105243_10186086 Ga0105243_101860862 345
110 3300009553 Ga0105249_10097616 Ga0105249_100976164 345
111 3300011119 Ga0105246_10156577 Ga0105246_101565772 345
112 3300025910 Ga0207684_10085320 Ga0207684_100853202 345
113 3300025922 Ga0207646_10026230 Ga0207646_100262304 345
114 3300025935 Ga0207709_10075013 Ga0207709_100750131 345
115 3300025961 Ga0207712_10172826 Ga0207712_101728262 345
116 3300026075 Ga0207708_10062594 Ga0207708_100625942 345
117 3300026116 Ga0207674_10096321 Ga0207674_100963212 345
118 3300026116 Ga0207674_10476214 Ga0207674_104762141 345
119 3300028380 Ga0268265_10015574 Ga0268265_100155746 345
120 3300028573 Ga0265334_10061554 Ga0265334_100615542 345
121 3300031251 Ga0265327_10018569 Ga0265327_100185694 345
122 3300031731 Ga0307405_10162167 Ga0307405_101621672 345
123 3300031901 Ga0307406_10252734 Ga0307406_102527341 345
124 3300042876 Ga0451577_0002865 Ga0451577_0002865_5524_6585 345
125 3300042876 Ga0451577_0025354 Ga0451577_0025354_2742_3797 345
126 3300042876 Ga0451577_0131478 Ga0451577_0131478_1141_2184 345
127 3300042876 Ga0451577_0152472 Ga0451577_0152472_28_1083 345
128 3300044673 Ga0453683_0001922 Ga0453683_0001922_3553_4608 345
129 3300044673 Ga0453683_0005841 Ga0453683_0005841_1039_2094 345
130 3300044673 Ga0453683_0030290 Ga0453683_0030290_1900_2937 345
131 3300044712 Ga0453684_0000023 Ga0453684_0000023_159615_160670 345
132 3300044712 Ga0453684_0000169 Ga0453684_0000169_260642_261718 345
133 3300044712 Ga0453684_0007072 Ga0453684_0007072_1943_2998 345
134 3300044712 Ga0453684_0009518 Ga0453684_0009518_1654_2709 345
135 3300044712 Ga0453684_0010152 Ga0453684_0010152_1658_2719 345
136 3300044712 Ga0453684_0023734 Ga0453684_0023734_1683_2720 345
137 3300044712 Ga0453684_0025127 Ga0453684_0025127_582_1637 345
138 3300044712 Ga0453684_0046741 Ga0453684_0046741_3803_4840 345
139 3300044712 Ga0453684_0057848 Ga0453684_0057848_1005_2060 345
140 3300044712 Ga0453684_0078051 Ga0453684_0078051_2254_3309 345
141 3300044712 Ga0453684_0104251 Ga0453684_0104251_2307_3344 345
142 3300044712 Ga0453684_0127030 Ga0453684_0127030_1224_2279 345
143 3300044712 Ga0453684_0144870 Ga0453684_0144870_119_1174 345
144 3300044712 Ga0453684_0164032 Ga0453684_0164032_244_1299 345
145 3300044712 Ga0453684_0165157 Ga0453684_0165157_1171_2214 345
146 3300044712 Ga0453684_0173585 Ga0453684_0173585_566_1621 345
147 3300044712 Ga0453684_0187218 Ga0453684_0187218_858_1913 345
148 3300044712 Ga0453684_0243211 Ga0453684_0243211_844_1881 345
149 3300044712 Ga0453684_0455554 Ga0453684_0455554_38_1093 345
150 3300045051 Ga0451576_0000164 Ga0451576_0000164_101976_103013 345
151 3300045051 Ga0451576_0004311 Ga0451576_0004311_10642_11697 345
152 3300045051 Ga0451576_0045731 Ga0451576_0045731_3106_4143 345
153 3300045051 Ga0451576_0100485 Ga0451576_0100485_1526_2569 345
154 3300045051 Ga0451576_0121564 Ga0451576_0121564_1481_2536 345
155 3300045051 Ga0451576_0246016 Ga0451576_0246016_640_1695 345
156 3300045051 Ga0451576_0501310 Ga0451576_0501310_142_1197 345
157 3300049741 Ga0501079_0016987 Ga0501079_0016987_3875_4912 345
158 3300049742 Ga0501080_0080426 Ga0501080_0080426_19_1056 345
159 3300049743 Ga0501081_0078935 Ga0501081_0078935_798_1835 345
160 3300049824 Ga0501045_0106306 Ga0501045_0106306_348_1385 345
161 3300050507 nmdc:mga05p37_235892_c1 nmdc:mga05p37_235892_c1_428_1465 345
162 3300050507 nmdc:mga05p37_25467_c1 nmdc:mga05p37_25467_c1_1489_2526 345
163 3300050507 nmdc:mga05p37_494_c1 nmdc:mga05p37_494_c1_20736_21773 345
164 3300050508 nmdc:mga09592_14769_c1 nmdc:mga09592_14769_c1_3667_4704 345
165 3300050509 nmdc:mga0qj67_282860_c1 nmdc:mga0qj67_282860_c1_116_1153 345
166 3300050510 nmdc:mga06r32_60212_c1 nmdc:mga06r32_60212_c1_436_1473 345
167 3300050515 nmdc:mga0a205_213732_c1 nmdc:mga0a205_213732_c1_208_1245 345
168 3300060353 Ga0501082_0291991 Ga0501082_0291991_111_1148 345

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

57

206

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
5b47-assembly1.cif.gz_B-2 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - pyruvate complex 0.8315 24 314
6n2o-assembly1.cif.gz_D 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound 0.7933 13 345
5b48-assembly1.cif.gz_D 2-oxoacid:ferredoxin oxidoreductase 1 from sulfolobus tokodai 0.7748 32 341
5b48-assembly1.cif.gz_D 2-oxoacid:ferredoxin oxidoreductase 1 from sulfolobus tokodai 0.7623 32 341
6n2o-assembly1.cif.gz_D 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound 0.7621 13 345
ID Description Score Start End Superfamily
af_Q57714_86_295_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.7879 96 211 3.40.50.970
af_O53181_117_260_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.7819 96 215 3.40.50.970
af_Q58077_321_493_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.7621 28 208 3.40.50.970
af_Q2FZ04_70_219_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.7577 84 229 3.40.50.970
af_P58416_5_175_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.7471 33 207 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A382G2C2-F1-model_v4 Thiamine pyrophosphate enzyme TPP-binding domain-containing protein 0.9797 13 102
AF-A0A535NC70-F1-model_v4 2-oxoacid:ferredoxin oxidoreductase subunit beta 0.9785 6 85
AF-A0A833DMP4-F1-model_v4 2-oxoacid:ferredoxin oxidoreductase subunit beta 0.9735 8 121 GO:0006082
GO:0016625
GO:0030976
GO:0044272
AF-A0A3N5ZNQ5-F1-model_v4 2-oxoacid:ferredoxin oxidoreductase subunit beta 0.9703 5 93
AF-A0A382A5J1-F1-model_v4 Thiamine pyrophosphate enzyme TPP-binding domain-containing protein 0.9661 8 89

Feature Viewer

pLDDT pTM Quality
80.61 0.82 High
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Predicted Structure (AlphaFold2)

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