F252910

General Info

Members Datasets Scaffolds Average Seq Length
168 121 336 539

Family's Representative Sequence

Representative Sequence 3300030745|Ga0316182_1123105|Ga0316182_11231052
Length 558
Sequence MSPKHSTPFRAGRYPQRQSILTEADYVVVGGGSAGCAVAGRLAASGASVILIEAGKNDRRNFMVNKPGMIGPMHAEPKLKKTVDWGYHTVPQANARNRELPQPRGKVLGGSSSINGLLWVRGNRANYDSWAAEGNVGWDADSVNDVYRRIEDFEDGADAYRGAGGPIKVTRHNQPTEASLSFQQAAADTLSVKILHDYNGAEQEGVSIFQQSAAGGRRYSAARGYIHDQNLPTLSTLTQVHATKIAIENGRAVGVQVADRKGQHHVVRAGKEVIVSAGVFGSPQLLMLSGIGHADHLAQHGITPVQDLPVGDNLHDHMFVPLTFEMPTALHRGLASYFARGLAKELTRGNSFLVNSVFETVGFVRTSLATDVPDLQIHVLPWSYPSPNQDAPIRHEVDKRAALTVMSSLIYPRSRGSLRLRDADPFSEPLIDFNYLAEPGDRQVLLEGVAMIREIMASPAFGDQVKSEIHPGVNLDAEAMKEEVTNRATSIYHAVGSCRMGVDDRAVVGPDLKVNGIDGLRVADASIMPSIIGGNTNAPSIMIGDKCAELILGTESVA

Samples

Sample ID Description Type Environment
1 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
6 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
7 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
8 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
9 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
12 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
13 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
14 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
15 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
16 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
17 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
20 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
21 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
27 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
29 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
30 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
31 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
32 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
33 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
34 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
35 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
36 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
37 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
38 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
39 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
40 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
41 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
42 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
43 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
44 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
45 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
46 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
47 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
48 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
49 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
50 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
51 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
52 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
53 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
54 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
55 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
56 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
57 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
58 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
59 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
60 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
61 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
63 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
66 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
71 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
73 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
74 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
75 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
76 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
77 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
80 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
81 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
82 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
83 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
84 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
85 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
86 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
87 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
88 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
89 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
90 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
91 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
92 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
93 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
94 2558860280 Kutzneria sp. 744 Isolate Unclassified
95 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
96 2643221561 Nocardioides sp. Root151 Isolate Unclassified
97 2643221576 Nocardioides sp. Root614 Isolate Unclassified
98 2643221590 Nocardioides sp. Root682 Isolate Unclassified
99 2643221604 Nocardioides sp. Root190 Isolate Unclassified
100 2643221615 Nocardioides sp. Root224 Isolate Unclassified
101 2643221617 Nocardioides sp. Root79 Isolate Unclassified
102 2643221620 Nocardioides sp. Root240 Isolate Unclassified
103 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
104 2643221692 Nocardia sp. Root136 Isolate Unclassified
105 2643221696 Nocardioides sp. Root140 Isolate Unclassified
106 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
107 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
108 2738541305 Nocardioides sp. CF167 Isolate Unclassified
109 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
110 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
111 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
112 2808606522 Amycolatopsis sp. BJA-103 Isolate Unclassified
113 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
114 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
115 2881147464 Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 Isolate Nodule
116 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
117 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
118 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
119 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
120 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified
121 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.33
Metatranscriptomes 0
Isolates 16.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 19.05
Nodule 0.6
Rhizoplane 1.79
Rhizosphere 58.33
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316182_1123105 3300030745 Bacteria 3578
2 JGI25406J46586_10008593 3300003203 Bacteria 4614
3 Ga0070658_10128002 3300005327 Bacteria 2115
4 Ga0070668_100020764 3300005347 Bacteria 4960
5 Ga0070714_100000205 3300005435 Bacteria 47895
6 Ga0070663_100000355 3300005455 Bacteria 24103
7 Ga0070663_100036434 3300005455 Bacteria 3419
8 Ga0070698_100005768 3300005471 Bacteria 13540
9 Ga0068853_100041964 3300005539 Bacteria 3909
10 Ga0068860_100000237 3300005843 Bacteria 84631
11 Ga0081455_10000174 3300005937 Bacteria 80174
12 Ga0081539_10000214 3300005985 Bacteria 135110
13 Ga0081539_10016328 3300005985 Bacteria 5313
14 Ga0075365_10000451 3300006038 Bacteria 15354
15 Ga0075365_10047466 3300006038 Bacteria 2823
16 Ga0075368_10003655 3300006042 Bacteria 5154
17 Ga0075368_10010435 3300006042 Bacteria 3358
18 Ga0075368_10014179 3300006042 Bacteria 2940
19 Ga0075363_100002995 3300006048 Bacteria 7061
20 Ga0075363_100026793 3300006048 Bacteria 2951
21 Ga0075364_10021440 3300006051 Bacteria 4072
22 Ga0075364_10035124 3300006051 Bacteria 3239
23 Ga0075362_10019658 3300006177 Bacteria 2812
24 Ga0075370_10001272 3300006353 Bacteria 10744
25 Ga0075370_10007814 3300006353 Bacteria 5470
26 Ga0075370_10043959 3300006353 Bacteria 2525
27 Ga0105240_10146812 3300009093 Bacteria 2814
28 Ga0105239_10185501 3300010375 Bacteria 2328
29 Ga0157369_10197916 3300013105 Bacteria 2109
30 Ga0207647_10038835 3300025904 Bacteria 3008
31 Ga0207705_10138437 3300025909 Bacteria 1816
32 Ga0207657_10004479 3300025919 Bacteria 14773
33 Ga0207679_10013117 3300025945 Bacteria 5427
34 Ga0207678_10001274 3300026067 Bacteria 23306
35 Ga0207678_10040130 3300026067 Bacteria 4060
36 Ga0209813_10012709 3300027866 Bacteria 2233
37 Ga0268264_10000195 3300028381 Bacteria 123899
38 Ga0265336_10008059 3300028666 Bacteria 3714
39 Ga0265338_10000503 3300028800 Bacteria 69758
40 Ga0307511_10015527 3300030521 Bacteria 7376
41 Ga0316182_1302543 3300030745 Bacteria 3900
42 Ga0307513_10070040 3300031456 Bacteria 3668
43 Ga0307513_10094184 3300031456 Bacteria 3041
44 Ga0307518_10003042 3300031838 Bacteria 12136
45 Ga0307409_100145285 3300031995 Bacteria 2050
46 Ga0307415_100065255 3300032126 Bacteria 2536
47 Ga0307507_10019753 3300033179 Bacteria 7575
48 Ga0373925_0000072 3300037068 Bacteria 106707
49 Ga0395900_0151934 3300037418 Bacteria 2365
50 Ga0395900_0161427 3300037418 Bacteria 2285
51 Ga0395900_0178382 3300037418 Bacteria 2160
52 Ga0451833_0312948 3300041491 Bacteria 1844
53 Ga0451837_0309987 3300041494 Bacteria 2931
54 Ga0451839_0521443 3300041496 Bacteria 7021
55 Ga0451853_1292950 3300041512 Bacteria 7604
56 Ga0439445_0012452 3300042004 Bacteria 2045
57 Ga0466969_0004932 3300044656 Bacteria 7110
58 Ga0466972_0007992 3300044658 Bacteria 5304
59 Ga0466972_0038839 3300044658 Bacteria 2325
60 Ga0466965_0016122 3300044683 Bacteria 3551
61 Ga0466965_0018272 3300044683 Bacteria 3359
62 Ga0466966_0015104 3300044684 Bacteria 5108
63 Ga0466966_0099355 3300044684 Bacteria 1801
64 Ga0466961_0007239 3300044693 Bacteria 7062
65 Ga0466961_0010912 3300044693 Bacteria 5803
66 Ga0466961_0104993 3300044693 Bacteria 1779
67 Ga0466963_0001209 3300044694 Bacteria 13596
68 Ga0466963_0012071 3300044694 Bacteria 5279
69 Ga0466964_0005952 3300044706 Bacteria 4543
70 Ga0466971_0002250 3300044719 Bacteria 8167
71 Ga0466971_0015136 3300044719 Bacteria 3394
72 Ga0466970_0014707 3300044765 Bacteria 4020
73 Ga0466970_0015088 3300044765 Bacteria 3974
74 Ga0466970_0017620 3300044765 Bacteria 3691
75 Ga0466970_0024917 3300044765 Bacteria 3130
76 Ga0466957_0014886 3300044842 Bacteria 4536
77 Ga0466960_0012281 3300044901 Bacteria 3609
78 Ga0466959_0001851 3300045049 Bacteria 13288
79 Ga0466959_0012074 3300045049 Bacteria 6232
80 Ga0466959_0015040 3300045049 Bacteria 5637
81 Ga0466959_0030716 3300045049 Bacteria 3978
82 Ga0466959_0095495 3300045049 Bacteria 2132
83 Ga0466958_0006492 3300045836 Bacteria 6370
84 Ga0466958_0006941 3300045836 Bacteria 6195
85 Ga0466958_0037328 3300045836 Bacteria 2911
86 Ga0466967_0005166 3300045976 Bacteria 8983
87 Ga0466967_0036964 3300045976 Bacteria 4174
88 Ga0466967_0066422 3300045976 Bacteria 3214
89 Ga0466967_0085048 3300045976 Bacteria 2863
90 Ga0495683_0000234 3300047323 Bacteria 50555
91 Ga0496102_0006142 3300048905 Bacteria 10237
92 Ga0496103_0026974 3300048906 Bacteria 3478
93 Ga0496114_0030827 3300048917 Bacteria 4412
94 Ga0501031_0014593 3300049568 Bacteria 5108
95 Ga0501032_0008986 3300049569 Bacteria 7268
96 Ga0501032_0022011 3300049569 Bacteria 4425
97 Ga0501034_0066635 3300049571 Bacteria 3614
98 Ga0501034_0095354 3300049571 Bacteria 2972
99 Ga0501034_0206624 3300049571 Bacteria 1920
100 Ga0501036_0015656 3300049572 Bacteria 6335
101 Ga0501037_0002718 3300049573 Bacteria 12787
102 Ga0501038_0004045 3300049574 Bacteria 13628
103 Ga0501038_0030354 3300049574 Bacteria 4784
104 Ga0501038_0079466 3300049574 Bacteria 2766
105 Ga0501039_0014719 3300049575 Bacteria 5984
106 Ga0501042_0018538 3300049578 Bacteria 4820
107 Ga0501043_0028418 3300049579 Bacteria 4390
108 Ga0501046_0023447 3300049580 Bacteria 5077
109 Ga0501048_0014030 3300049582 Bacteria 5940
110 Ga0501048_0027816 3300049582 Bacteria 4106
111 Ga0501070_0011136 3300049586 Bacteria 7591
112 Ga0501070_0039472 3300049586 Bacteria 3938
113 Ga0501070_0089630 3300049586 Bacteria 2545
114 Ga0501073_0042607 3300049589 Bacteria 3203
115 Ga0501074_0055493 3300049590 Bacteria 2855
116 Ga0501079_0044159 3300049741 Bacteria 3440
117 Ga0501080_0037845 3300049742 Bacteria 4505
118 Ga0501035_0037736 3300049822 Bacteria 4373
119 Ga0501035_0079768 3300049822 Bacteria 2891
120 Ga0501044_0042458 3300049823 Bacteria 4729
121 nmdc:mga03n38_1989_c1 3300050490 Bacteria 6153
122 nmdc:mga03n38_6750_c1 3300050490 Bacteria 4013
123 nmdc:mga00v17_12802_c1 3300050491 Bacteria 4637
124 nmdc:mga00v17_36015_c1 3300050491 Bacteria 2948
125 nmdc:mga0yw44_40631_c1 3300050492 Bacteria 2765
126 nmdc:mga0yw44_72332_c1 3300050492 Bacteria 2143
127 nmdc:mga06z11_28471_c1 3300050494 Bacteria 2681
128 nmdc:mga06z11_55652_c1 3300050494 Bacteria 2043
129 nmdc:mga04h51_6692_c1 3300050495 Bacteria 3004
130 nmdc:mga07m45_30582_c1 3300050496 Bacteria 2983
131 nmdc:mga07m45_86902_c1 3300050496 Bacteria 1789
132 nmdc:mga08y16_288022_c1 3300050511 Bacteria 1693
133 Ga0500644_0000278 3300053088 Bacteria 28510
134 Ga0500641_0001972 3300053096 Bacteria 7285
135 Ga0500556_0001083 3300053104 Bacteria 13734
136 Ga0500593_000052 3300053117 Bacteria 42002
137 Ga0500573_0008984 3300053140 Bacteria 5525
138 Ga0500577_0003611 3300053142 Bacteria 4023
139 Ga0500616_0009440 3300053153 Bacteria 5934
140 Ga0466962_0020699 3300061719 Bacteria 3161
141 2559423342 2558860280 Bacteria 11429938
142 2586061801 2585427649 Bacteria 9053857
143 2643824346 2643221561 Bacteria 4984412
144 2643892341 2643221576 Bacteria 5214352
145 2643961393 2643221590 Bacteria 5214697
146 2644033467 2643221604 Bacteria 5014917
147 2644090953 2643221615 Bacteria 5487866
148 2644101544 2643221617 Bacteria 5139111
149 2644118793 2643221620 Bacteria 5134593
150 2644320756 2643221657 Bacteria 5490246
151 2644511558 2643221692 Bacteria 7282860
152 2644534762 2643221696 Bacteria 5431823
153 2645721796 2643221961 Bacteria 3919167
154 2645724258 2643221962 Bacteria 3874254
155 2738869376 2738541305 Bacteria 4910150
156 2744954383 2744054611 Bacteria 5611514
157 2774392530 2773857762 Bacteria 5971770
158 2809196312 2808606439 Bacteria 5952208
159 2809590476 2808606522 Bacteria 9488490
160 2812334236 2811994874 Bacteria 5367947
161 2812351526 2811994878 Bacteria 5992952
162 2881154690 2881147464 Bacteria 7779814
163 2891970867 2891968417 Bacteria 5821697
164 2915770698 2915768154 Bacteria 8424322
165 2917742919 2917736166 Bacteria 9690793
166 8003317609 8003314358 Bacteria 10575343
167 8055181235 8055172936 Bacteria 9305943
168 8056212795 8056207758 Bacteria 8639239
169 Ga0316182_1123105
170 JGI25406J46586_10008593
171 Ga0070658_10128002
172 Ga0070668_100020764
173 Ga0070714_100000205
174 Ga0070663_100000355
175 Ga0070663_100036434
176 Ga0070698_100005768
177 Ga0068853_100041964
178 Ga0068860_100000237
179 Ga0081455_10000174
180 Ga0081539_10000214
181 Ga0081539_10016328
182 Ga0075365_10000451
183 Ga0075365_10047466
184 Ga0075368_10003655
185 Ga0075368_10010435
186 Ga0075368_10014179
187 Ga0075363_100002995
188 Ga0075363_100026793
189 Ga0075364_10021440
190 Ga0075364_10035124
191 Ga0075362_10019658
192 Ga0075370_10001272
193 Ga0075370_10007814
194 Ga0075370_10043959
195 Ga0105240_10146812
196 Ga0105239_10185501
197 Ga0157369_10197916
198 Ga0207647_10038835
199 Ga0207705_10138437
200 Ga0207657_10004479
201 Ga0207679_10013117
202 Ga0207678_10001274
203 Ga0207678_10040130
204 Ga0209813_10012709
205 Ga0268264_10000195
206 Ga0265336_10008059
207 Ga0265338_10000503
208 Ga0307511_10015527
209 Ga0316182_1302543
210 Ga0307513_10070040
211 Ga0307513_10094184
212 Ga0307518_10003042
213 Ga0307409_100145285
214 Ga0307415_100065255
215 Ga0307507_10019753
216 Ga0373925_0000072
217 Ga0395900_0151934
218 Ga0395900_0161427
219 Ga0395900_0178382
220 Ga0451833_0312948
221 Ga0451837_0309987
222 Ga0451839_0521443
223 Ga0451853_1292950
224 Ga0439445_0012452
225 Ga0466969_0004932
226 Ga0466972_0007992
227 Ga0466972_0038839
228 Ga0466965_0016122
229 Ga0466965_0018272
230 Ga0466966_0015104
231 Ga0466966_0099355
232 Ga0466961_0007239
233 Ga0466961_0010912
234 Ga0466961_0104993
235 Ga0466963_0001209
236 Ga0466963_0012071
237 Ga0466964_0005952
238 Ga0466971_0002250
239 Ga0466971_0015136
240 Ga0466970_0014707
241 Ga0466970_0015088
242 Ga0466970_0017620
243 Ga0466970_0024917
244 Ga0466957_0014886
245 Ga0466960_0012281
246 Ga0466959_0001851
247 Ga0466959_0012074
248 Ga0466959_0015040
249 Ga0466959_0030716
250 Ga0466959_0095495
251 Ga0466958_0006492
252 Ga0466958_0006941
253 Ga0466958_0037328
254 Ga0466967_0005166
255 Ga0466967_0036964
256 Ga0466967_0066422
257 Ga0466967_0085048
258 Ga0495683_0000234
259 Ga0496102_0006142
260 Ga0496103_0026974
261 Ga0496114_0030827
262 Ga0501031_0014593
263 Ga0501032_0008986
264 Ga0501032_0022011
265 Ga0501034_0066635
266 Ga0501034_0095354
267 Ga0501034_0206624
268 Ga0501036_0015656
269 Ga0501037_0002718
270 Ga0501038_0004045
271 Ga0501038_0030354
272 Ga0501038_0079466
273 Ga0501039_0014719
274 Ga0501042_0018538
275 Ga0501043_0028418
276 Ga0501046_0023447
277 Ga0501048_0014030
278 Ga0501048_0027816
279 Ga0501070_0011136
280 Ga0501070_0039472
281 Ga0501070_0089630
282 Ga0501073_0042607
283 Ga0501074_0055493
284 Ga0501079_0044159
285 Ga0501080_0037845
286 Ga0501035_0037736
287 Ga0501035_0079768
288 Ga0501044_0042458
289 nmdc:mga03n38_1989_c1
290 nmdc:mga03n38_6750_c1
291 nmdc:mga00v17_12802_c1
292 nmdc:mga00v17_36015_c1
293 nmdc:mga0yw44_40631_c1
294 nmdc:mga0yw44_72332_c1
295 nmdc:mga06z11_28471_c1
296 nmdc:mga06z11_55652_c1
297 nmdc:mga04h51_6692_c1
298 nmdc:mga07m45_30582_c1
299 nmdc:mga07m45_86902_c1
300 nmdc:mga08y16_288022_c1
301 Ga0500644_0000278
302 Ga0500641_0001972
303 Ga0500556_0001083
304 Ga0500593_000052
305 Ga0500573_0008984
306 Ga0500577_0003611
307 Ga0500616_0009440
308 Ga0466962_0020699
309 2559423342
310 2586061801
311 2643824346
312 2643892341
313 2643961393
314 2644033467
315 2644090953
316 2644101544
317 2644118793
318 2644320756
319 2644511558
320 2644534762
321 2645721796
322 2645724258
323 2738869376
324 2744954383
325 2774392530
326 2809196312
327 2809590476
328 2812334236
329 2812351526
330 2881154690
331 2891970867
332 2915770698
333 2917742919
334 8003317609
335 8055181235
336 8056212795

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00732

GMC_oxred_N

GMC oxidoreductase

24

319

0.97

PF00890

FAD_binding_2

FAD binding domain

25

95

0.91

PF05199

GMC_oxred_C

GMC oxidoreductase

412

544

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1m75-assembly1.cif.gz_B crystal structure of the n208s mutant of l-3-hydroxyacyl-coa dehydrogenase in complex with nad and acetoacetyl-coa 0.9956 13 41
1lso-assembly1.cif.gz_B crystal structure of the s137a mutant of l-3-hydroxyacyl-coa dehydrogenase in complex with nad 0.9893 13 41
1f12-assembly1.cif.gz_A l-3-hydroxyacyl-coa dehydrogenase complexed with 3-hydroxybutyryl-coa 0.9871 13 40
4j0f-assembly1.cif.gz_B crystal structure of 3-hydroxyacyl-coa dehydrogenase from caenorhadbitis elegans in p212121 space group 0.9723 13 43
6z5f-assembly1.cif.gz_AAA crystal structure of rat peroxisomal multifunctional enzyme type-1 (rpmfe1) complexed with 3-ketodecanoyl-coa and oxidised nicotinamide adenine dinucleotide 0.9709 12 41
ID Description Score Start End Superfamily
af_I6XF25_1_136_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 1.012 13 41 3.40.50.720
5z2gB02 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.992 13 41 3.50.50.60
af_Q5AMP2_2_178_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9891 13 39 3.40.50.720
3gg2D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9879 12 41 3.40.50.720
1mfzC01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9793 13 42 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A848TNL3-F1-model_v4 FAD-binding protein 0.9633 11 295 GO:0016614
GO:0050660
AF-A0A4R4PAC7-F1-model_v4 Choline dehydrogenase 0.96 1 544 GO:0016614
GO:0050660
AF-A0A528CBL4-F1-model_v4 Choline dehydrogenase 0.9596 75 293 GO:0016614
GO:0050660
AF-A0A4R4PAC7-F1-model_v4 Choline dehydrogenase 0.9583 1 544 GO:0016614
GO:0050660
AF-A0A531MDL2-F1-model_v4 Dehydrogenase 0.9581 90 295 GO:0008812
GO:0016020
GO:0019285
GO:0050660

Map