F252352

General Info

Members Datasets Scaffolds Average Seq Length
168 127 154 270

Family's Representative Sequence

Representative Sequence 3300006038|Ga0075365_10001147|Ga0075365_1000114710
Length 315
Sequence MSEVDYDASLQLAERLVRFRKTRYITPTGALHSSLRTERDIRLMANQLPRILLIGCGNMGGAMLSGWLDRGVEKVVVVAPRPHQVGFTDNRVLVCRNMTEIPTSFSPSVVVFAVKPQVATQILTEYRRYAVAGTVFLSIMAGFTTQSLVEALGENTCVVRAMPNSPAAIRQGFTVAFAGSGIAEEHKHLFNDLLEAVGEVAWVEDETLLDPATAISGGGPAYVYLLVEMLQAAAVDQGIPNAIAERMARATVAGSGALLAGSDVDAAQLRKNVTSPGGTTERALSVLMHAGAWPKSVSDAICAATARSKELSGSQ

Samples

Sample ID Description Type Environment
1 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
2 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
3 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
4 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
5 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
6 2842698319 Methylobacterium sp. R-72139 Isolate Unclassified
7 2852673933 Sporosarcina sp. JAI121 Isolate Rhizosphere
8 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
9 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
10 2902330777 Methylobacterium sp. 2A Isolate Unclassified
11 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
12 2928510474 Sporosarcina psychrophila 1288 Isolate Rhizosphere
13 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
14 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
15 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
26 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
27 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
32 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
33 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
34 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
35 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
41 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
42 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
43 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
44 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
45 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
59 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
62 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
63 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
64 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
65 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
66 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
69 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
70 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
71 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
72 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
73 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
74 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
80 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
83 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
84 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
87 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
88 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
89 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
90 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
91 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
92 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
100 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
101 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
104 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
107 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
108 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
109 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
110 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
111 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
112 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
114 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
115 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
116 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
117 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
118 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
119 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
120 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
121 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
124 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 641522639 Methylobacterium sp. 4-46 Isolate Nodule
127 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.07
Metatranscriptomes 0.6
Isolates 8.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.1
Nodule 1.79
Rhizoplane 0.6
Rhizosphere 75.6
Stem 0
Stem Tuber 0
Unclassified 8.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10027942 3300005327 Bacteria 4527
2 Ga0070676_10048359 3300005328 Bacteria 2487
3 Ga0070680_100021960 3300005336 Bacteria 5076
4 Ga0070660_100112945 3300005339 Bacteria 2163
5 Ga0070669_100116039 3300005353 Unclassified 2037
6 Ga0070659_100021402 3300005366 Bacteria 4924
7 Ga0070667_100111393 3300005367 Unclassified 2374
8 Ga0070667_100162072 3300005367 Bacteria 1970
9 Ga0070663_100200624 3300005455 Bacteria 1557
10 Ga0070681_10449340 3300005458 Bacteria 1201
11 Ga0068867_100326359 3300005459 Bacteria 1273
12 Ga0070679_100138416 3300005530 Bacteria 2415
13 Ga0068863_100002720 3300005841 Bacteria 17466
14 Ga0068860_100380267 3300005843 Bacteria 1394
15 Ga0068862_100055812 3300005844 Bacteria 3384
16 Ga0081540_1008252 3300005983 Bacteria 7297
17 Ga0075365_10001147 3300006038 Bacteria 11597
18 Ga0075365_10274831 3300006038 Bacteria 1185
19 Ga0075368_10019969 3300006042 Bacteria 2533
20 Ga0075363_100079569 3300006048 Bacteria 1791
21 Ga0075367_10001011 3300006178 Bacteria 11560
22 Ga0075366_10001326 3300006195 Bacteria 12359
23 Ga0075370_10000739 3300006353 Bacteria 13026
24 Ga0105240_10177251 3300009093 Bacteria 2519
25 Ga0111539_10318579 3300009094 Bacteria 1810
26 Ga0105248_10168845 3300009177 Bacteria 2466
27 Ga0105238_10397525 3300009551 Bacteria 1371
28 Ga0105249_10006085 3300009553 Bacteria 10461
29 Ga0105249_10145177 3300009553 Unclassified 2279
30 Ga0105239_10521262 3300010375 Bacteria 1352
31 Ga0157370_10021857 3300013104 Bacteria 6372
32 Ga0157370_10658250 3300013104 Bacteria 957
33 Ga0157369_10230081 3300013105 Bacteria 1938
34 Ga0157369_10340194 3300013105 Bacteria 1559
35 Ga0163162_10098186 3300013306 Bacteria 3018
36 Ga0206353_11902790 3300020082 Bacteria 3470
37 Ga0213875_10000142 3300021388 Bacteria 77423
38 Ga0207643_10183415 3300025908 Bacteria 1267
39 Ga0207707_10299243 3300025912 Bacteria 1391
40 Ga0207695_10112278 3300025913 Bacteria 2703
41 Ga0207660_10119274 3300025917 Bacteria 1996
42 Ga0207657_10115075 3300025919 Bacteria 2217
43 Ga0207652_10025327 3300025921 Bacteria 4931
44 Ga0207652_10032689 3300025921 Bacteria 4376
45 Ga0207652_10077016 3300025921 Bacteria 2909
46 Ga0207681_10195038 3300025923 Bacteria 1552
47 Ga0207687_10358763 3300025927 Bacteria 1189
48 Ga0207690_10093762 3300025932 Bacteria 2128
49 Ga0207712_10002376 3300025961 Bacteria 12201
50 Ga0207678_10203736 3300026067 Bacteria 1692
51 Ga0207641_10790158 3300026088 Bacteria 938
52 Ga0207674_10236799 3300026116 Bacteria 1773
53 Ga0209813_10013297 3300027866 Bacteria 2195
54 Ga0268265_10139763 3300028380 Bacteria 2026
55 Ga0268264_10148958 3300028381 Bacteria 2096
56 Ga0268264_10290461 3300028381 Bacteria 1535
57 Ga0307515_10001903 3300028794 Bacteria 46429
58 Ga0265331_10001138 3300031250 Bacteria 20276
59 Ga0265327_10000095 3300031251 Bacteria 194803
60 Ga0307513_10011118 3300031456 Bacteria 11219
61 Ga0307513_10236470 3300031456 Bacteria 1636
62 Ga0265313_10001798 3300031595 Bacteria 19605
63 Ga0265314_10019883 3300031711 Bacteria 5193
64 Ga0307409_100763829 3300031995 Bacteria 971
65 Ga0307510_10080846 3300033180 Bacteria 3157
66 Ga0373955_0018804 3300035172 Bacteria 3444
67 Ga0373955_0180185 3300035172 Bacteria 1253
68 Ga0373955_0286040 3300035172 Bacteria 992
69 Ga0373931_0252292 3300035691 Bacteria 1073
70 Ga0373933_0307346 3300035724 Bacteria 1027
71 Ga0373937_0015860 3300036401 Bacteria 6679
72 Ga0373937_0037892 3300036401 Bacteria 4394
73 Ga0373937_0268366 3300036401 Bacteria 1610
74 Ga0373937_0553360 3300036401 Bacteria 1093
75 Ga0316584_0056180 3300036712 Bacteria 2947
76 Ga0373925_0334025 3300037068 Bacteria 1228
77 Ga0395900_0072015 3300037418 Bacteria 3554
78 Ga0395905_0000571 3300037471 Bacteria 49947
79 Ga0436364_1465979 3300037853 Bacteria 23307
80 Ga0395901_0239965 3300038443 Bacteria 1891
81 Ga0400486_15468 3300038742 Bacteria 3117
82 Ga0400486_26225 3300038742 Bacteria 1891
83 Ga0439453_0013643 3300041408 Bacteria 1384
84 Ga0453684_0021661 3300044712 Bacteria 9587
85 Ga0466968_0002411 3300044735 Bacteria 6854
86 Ga0466970_0067045 3300044765 Bacteria 1927
87 Ga0451576_0005584 3300045051 Bacteria 15714
88 Ga0466967_0282722 3300045976 Bacteria 1592
89 Ga0495664_0193157 3300046477 Bacteria 1234
90 Ga0495628_0214321 3300046516 Bacteria 1448
91 Ga0495643_0234886 3300046522 Bacteria 863
92 Ga0495645_0053088 3300046543 Bacteria 2947
93 Ga0496115_0234008 3300048918 Bacteria 1514
94 Ga0496121_0133859 3300048924 Bacteria 1850
95 Ga0501031_0145552 3300049568 Bacteria 1548
96 Ga0501031_0196319 3300049568 Bacteria 1317
97 Ga0501032_0035583 3300049569 Bacteria 3403
98 Ga0501032_0062109 3300049569 Bacteria 2504
99 Ga0501032_0065776 3300049569 Bacteria 2424
100 Ga0501033_0029866 3300049570 Bacteria 4097
101 Ga0501034_0026834 3300049571 Bacteria 5860
102 Ga0501034_0074900 3300049571 Bacteria 3392
103 Ga0501034_0079203 3300049571 Bacteria 3289
104 Ga0501034_0203701 3300049571 Bacteria 1936
105 Ga0501034_0276229 3300049571 Bacteria 1620
106 Ga0501036_0044366 3300049572 Bacteria 3766
107 Ga0501036_0061937 3300049572 Bacteria 3169
108 Ga0501037_0017593 3300049573 Bacteria 5262
109 Ga0501037_0077873 3300049573 Bacteria 2406
110 Ga0501037_0257427 3300049573 Bacteria 1220
111 Ga0501038_0000892 3300049574 Bacteria 26434
112 Ga0501038_0097579 3300049574 Bacteria 2451
113 Ga0501038_0138323 3300049574 Bacteria 1994
114 Ga0501039_0010247 3300049575 Bacteria 7144
115 Ga0501043_0242464 3300049579 Bacteria 1390
116 Ga0501043_0450547 3300049579 Bacteria 967
117 Ga0501046_0000011 3300049580 Bacteria 326457
118 Ga0501047_0017144 3300049581 Bacteria 6929
119 Ga0501047_0081844 3300049581 Bacteria 3104
120 Ga0501047_0256653 3300049581 Bacteria 1596
121 Ga0501067_0003181 3300049583 Bacteria 9064
122 Ga0501069_0003428 3300049585 Bacteria 8146
123 Ga0501070_0009040 3300049586 Bacteria 8427
124 Ga0501070_0035246 3300049586 Bacteria 4183
125 Ga0501073_0032469 3300049589 Bacteria 3721
126 Ga0501073_0297615 3300049589 Bacteria 1113
127 Ga0501074_0009358 3300049590 Bacteria 7117
128 Ga0501074_0024201 3300049590 Bacteria 4413
129 Ga0501074_0197491 3300049590 Bacteria 1434
130 Ga0501077_0063343 3300049593 Bacteria 2346
131 Ga0501079_0025245 3300049741 Bacteria 4558
132 Ga0501079_0462293 3300049741 Bacteria 997
133 Ga0501081_0325190 3300049743 Bacteria 1131
134 Ga0501083_0070201 3300049744 Bacteria 2330
135 Ga0501035_0070398 3300049822 Bacteria 3098
136 Ga0501044_0007667 3300049823 Bacteria 11869
137 Ga0501044_0068303 3300049823 Bacteria 3620
138 Ga0501044_0078141 3300049823 Bacteria 3354
139 nmdc:mga0yw44_817_c1 3300050492 Bacteria 11605
140 nmdc:mga0k408_353_c1 3300050493 Bacteria 25220
141 nmdc:mga06z11_123897_c1 3300050494 Bacteria 1445
142 nmdc:mga06z11_33605_c1 3300050494 Bacteria 2511
143 nmdc:mga06z11_791_c1 3300050494 Bacteria 11560
144 nmdc:mga04h51_19382_c1 3300050495 Bacteria 2017
145 nmdc:mga04h51_5107_c1 3300050495 Bacteria 3325
146 nmdc:mga07m45_88_c1 3300050496 Bacteria 34971
147 Ga0500556_0000191 3300053104 Bacteria 50112
148 Ga0500562_011378 3300053108 Bacteria 2260
149 Ga0500573_0132696 3300053140 Bacteria 1378
150 Ga0500616_0015042 3300053153 Bacteria 4434
151 Ga0500616_0018799 3300053153 Bacteria 3903
152 Ga0500645_054572 3300053730 Bacteria 1162
153 Ga0501084_0018945 3300054114 Bacteria 5730
154 Ga0501082_0076940 3300060353 Bacteria 2877

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300026088 Ga0207641_10790158 Ga0207641_107901582 226
2 3300049579 Ga0501043_0450547 Ga0501043_0450547_13_726 234
3 3300013104 Ga0157370_10021857 Ga0157370_100218573 235
4 3300025917 Ga0207660_10119274 Ga0207660_101192742 235
5 3300025921 Ga0207652_10025327 Ga0207652_100253277 235
6 3300005455 Ga0070663_100200624 Ga0070663_1002006242 239
7 3300025921 Ga0207652_10077016 Ga0207652_100770163 242
8 3300006353 Ga0075370_10000739 Ga0075370_1000073910 243
9 3300005983 Ga0081540_1008252 Ga0081540_10082525 245
10 3300038742 Ga0400486_26225 Ga0400486_26225_31_879 245
11 3300053104 Ga0500556_0000191 Ga0500556_0000191_3932_4753 245
12 3300053730 Ga0500645_054572 Ga0500645_054572_210_1031 245
13 3300005336 Ga0070680_100021960 Ga0070680_1000219604 246
14 3300037068 Ga0373925_0334025 Ga0373925_0334025_74_904 246
15 3300045976 Ga0466967_0282722 Ga0466967_0282722_465_1307 246
16 3300050492 nmdc:mga0yw44_817_c1 nmdc:mga0yw44_817_c1_8247_9020 247
17 3300050493 nmdc:mga0k408_353_c1 nmdc:mga0k408_353_c1_2399_3172 247
18 3300050494 nmdc:mga06z11_791_c1 nmdc:mga06z11_791_c1_8202_8975 247
19 3300050495 nmdc:mga04h51_5107_c1 nmdc:mga04h51_5107_c1_1452_2225 247
20 3300050496 nmdc:mga07m45_88_c1 nmdc:mga07m45_88_c1_16710_17483 247
21 3300013104 Ga0157370_10658250 Ga0157370_106582501 248
22 3300025912 Ga0207707_10299243 Ga0207707_102992431 248
23 3300025913 Ga0207695_10112278 Ga0207695_101122783 248
24 3300025921 Ga0207652_10032689 Ga0207652_100326896 248
25 3300025932 Ga0207690_10093762 Ga0207690_100937621 248
26 3300013105 Ga0157369_10340194 Ga0157369_103401942 249
27 3300044765 Ga0466970_0067045 Ga0466970_0067045_1088_1891 250
28 3300036712 Ga0316584_0056180 Ga0316584_0056180_2109_2927 251
29 3300036401 Ga0373937_0268366 Ga0373937_0268366_715_1521 252
30 3300031250 Ga0265331_10001138 Ga0265331_100011382 253
31 3300031251 Ga0265327_10000095 Ga0265327_10000095121 253
32 3300038742 Ga0400486_15468 Ga0400486_15468_52_849 253
33 3300050494 nmdc:mga06z11_123897_c1 nmdc:mga06z11_123897_c1_60_845 253
34 3300050494 nmdc:mga06z11_33605_c1 nmdc:mga06z11_33605_c1_1481_2266 253
35 3300050495 nmdc:mga04h51_19382_c1 nmdc:mga04h51_19382_c1_1018_1803 253
36 3300049571 Ga0501034_0276229 Ga0501034_0276229_257_1036 254
37 3300049574 Ga0501038_0138323 Ga0501038_0138323_52_831 254
38 3300006038 Ga0075365_10274831 Ga0075365_102748312 255
39 3300041408 Ga0439453_0013643 Ga0439453_0013643_333_1154 257
40 3300006038 Ga0075365_10001147 Ga0075365_1000114710 258
41 3300006042 Ga0075368_10019969 Ga0075368_100199694 258
42 3300006178 Ga0075367_10001011 Ga0075367_1000101110 258
43 3300006195 Ga0075366_10001326 Ga0075366_1000132611 258
44 3300010375 Ga0105239_10521262 Ga0105239_105212622 258
45 3300027866 Ga0209813_10013297 Ga0209813_100132972 258
46 3300031595 Ga0265313_10001798 Ga0265313_1000179817 258
47 3300044712 Ga0453684_0021661 Ga0453684_0021661_3251_4039 258
48 3300045051 Ga0451576_0005584 Ga0451576_0005584_7120_7929 258
49 3300053108 Ga0500562_011378 Ga0500562_011378_622_1443 258
50 3300053153 Ga0500616_0015042 Ga0500616_0015042_3471_4256 258
51 3300005339 Ga0070660_100112945 Ga0070660_1001129452 259
52 3300005366 Ga0070659_100021402 Ga0070659_1000214022 259
53 3300005458 Ga0070681_10449340 Ga0070681_104493402 259
54 3300005530 Ga0070679_100138416 Ga0070679_1001384163 259
55 3300009093 Ga0105240_10177251 Ga0105240_101772513 259
56 3300009551 Ga0105238_10397525 Ga0105238_103975252 259
57 3300013105 Ga0157369_10230081 Ga0157369_102300811 259
58 3300020082 Ga0206353_11902790 Ga0206353_119027905 259
59 3300025919 Ga0207657_10115075 Ga0207657_101150753 259
60 3300048918 Ga0496115_0234008 Ga0496115_0234008_469_1275 259
61 3300049590 Ga0501074_0197491 Ga0501074_0197491_582_1406 259
62 iso_pu_bacteria 2902330777 2902330949 259
63 3300031711 Ga0265314_10019883 Ga0265314_100198835 260
64 3300049569 Ga0501032_0062109 Ga0501032_0062109_1144_1959 260
65 3300049571 Ga0501034_0026834 Ga0501034_0026834_327_1142 260
66 3300049573 Ga0501037_0257427 Ga0501037_0257427_201_1016 260
67 3300049581 Ga0501047_0017144 Ga0501047_0017144_5376_6191 260
68 3300049583 Ga0501067_0003181 Ga0501067_0003181_5955_6770 260
69 3300049585 Ga0501069_0003428 Ga0501069_0003428_4146_4961 260
70 3300049586 Ga0501070_0009040 Ga0501070_0009040_4453_5268 260
71 3300049589 Ga0501073_0032469 Ga0501073_0032469_2637_3452 260
72 3300049590 Ga0501074_0009358 Ga0501074_0009358_6102_6917 260
73 3300049741 Ga0501079_0025245 Ga0501079_0025245_2400_3215 260
74 3300049744 Ga0501083_0070201 Ga0501083_0070201_300_1115 260
75 3300049822 Ga0501035_0070398 Ga0501035_0070398_2058_2873 260
76 3300049823 Ga0501044_0007667 Ga0501044_0007667_7545_8360 260
77 3300054114 Ga0501084_0018945 Ga0501084_0018945_3923_4738 260
78 3300060353 Ga0501082_0076940 Ga0501082_0076940_957_1772 260
79 3300009094 Ga0111539_10318579 Ga0111539_103185792 262
80 3300044735 Ga0466968_0002411 Ga0466968_0002411_3870_4673 262
81 3300046522 Ga0495643_0234886 Ga0495643_0234886_52_849 262
82 3300049574 Ga0501038_0000892 Ga0501038_0000892_21666_22475 262
83 3300049741 Ga0501079_0462293 Ga0501079_0462293_10_825 262
84 3300049743 Ga0501081_0325190 Ga0501081_0325190_31_846 262
85 iso_pu_bacteria 2545555834 2545673376 262
86 iso_pu_bacteria 2738541281 2738747281 262
87 iso_pu_bacteria 2738543032 2739356536 262
88 iso_pu_bacteria 2829745981 2829750052 262
89 iso_pu_bacteria 2842698319 2842699448 262
90 iso_pu_bacteria 2852673933 2852675443 262
91 iso_pu_bacteria 2861691609 2861695291 262
92 iso_pu_bacteria 2889306138 2889308638 262
93 iso_pu_bacteria 2902405164 2902408510 262
94 iso_pu_bacteria 2928510474 2928512552 262
95 iso_pu_bacteria 641522639 641641191 262
96 iso_pu_bacteria 643348564 643599103 262
97 3300021388 Ga0213875_10000142 Ga0213875_1000014242 263
98 3300037853 Ga0436364_1465979 Ga0436364_1465979_5907_6800 263
99 3300049589 Ga0501073_0297615 Ga0501073_0297615_103_921 263
100 iso_pu_bacteria 2808606364 2808869319 263
101 3300006048 Ga0075363_100079569 Ga0075363_1000795691 264
102 3300028794 Ga0307515_10001903 Ga0307515_1000190314 264
103 3300031456 Ga0307513_10011118 Ga0307513_100111189 264
104 3300031995 Ga0307409_100763829 Ga0307409_1007638291 264
105 3300033180 Ga0307510_10080846 Ga0307510_100808464 264
106 3300037418 Ga0395900_0072015 Ga0395900_0072015_922_1740 264
107 3300037471 Ga0395905_0000571 Ga0395905_0000571_37056_37874 264
108 3300038443 Ga0395901_0239965 Ga0395901_0239965_506_1324 264
109 3300048924 Ga0496121_0133859 Ga0496121_0133859_20_853 264
110 3300049568 Ga0501031_0145552 Ga0501031_0145552_361_1197 264
111 3300049568 Ga0501031_0196319 Ga0501031_0196319_49_885 264
112 3300049569 Ga0501032_0035583 Ga0501032_0035583_955_1791 264
113 3300049569 Ga0501032_0065776 Ga0501032_0065776_1480_2316 264
114 3300049570 Ga0501033_0029866 Ga0501033_0029866_2012_2848 264
115 3300049571 Ga0501034_0074900 Ga0501034_0074900_958_1794 264
116 3300049571 Ga0501034_0079203 Ga0501034_0079203_1706_2542 264
117 3300049571 Ga0501034_0203701 Ga0501034_0203701_266_1102 264
118 3300049572 Ga0501036_0044366 Ga0501036_0044366_879_1715 264
119 3300049572 Ga0501036_0061937 Ga0501036_0061937_1549_2385 264
120 3300049573 Ga0501037_0017593 Ga0501037_0017593_2213_3049 264
121 3300049573 Ga0501037_0077873 Ga0501037_0077873_926_1762 264
122 3300049574 Ga0501038_0097579 Ga0501038_0097579_1439_2275 264
123 3300049575 Ga0501039_0010247 Ga0501039_0010247_1008_1844 264
124 3300049579 Ga0501043_0242464 Ga0501043_0242464_359_1195 264
125 3300049581 Ga0501047_0081844 Ga0501047_0081844_307_1143 264
126 3300049581 Ga0501047_0256653 Ga0501047_0256653_174_1010 264
127 3300049586 Ga0501070_0035246 Ga0501070_0035246_1686_2522 264
128 3300049590 Ga0501074_0024201 Ga0501074_0024201_1000_1836 264
129 3300049823 Ga0501044_0068303 Ga0501044_0068303_1406_2242 264
130 3300049823 Ga0501044_0078141 Ga0501044_0078141_2314_3150 264
131 3300005367 Ga0070667_100111393 Ga0070667_1001113934 265
132 3300005459 Ga0068867_100326359 Ga0068867_1003263592 265
133 3300005843 Ga0068860_100380267 Ga0068860_1003802671 265
134 3300025908 Ga0207643_10183415 Ga0207643_101834152 265
135 3300025927 Ga0207687_10358763 Ga0207687_103587632 265
136 3300026067 Ga0207678_10203736 Ga0207678_102037362 265
137 3300028381 Ga0268264_10290461 Ga0268264_102904612 265
138 3300031456 Ga0307513_10236470 Ga0307513_102364702 265
139 3300035172 Ga0373955_0018804 Ga0373955_0018804_2452_3273 265
140 3300035172 Ga0373955_0286040 Ga0373955_0286040_94_915 265
141 3300035691 Ga0373931_0252292 Ga0373931_0252292_44_862 265
142 3300035724 Ga0373933_0307346 Ga0373933_0307346_149_970 265
143 3300036401 Ga0373937_0015860 Ga0373937_0015860_723_1544 265
144 3300036401 Ga0373937_0037892 Ga0373937_0037892_506_1327 265
145 3300049580 Ga0501046_0000011 Ga0501046_0000011_189317_190141 265
146 3300049593 Ga0501077_0063343 Ga0501077_0063343_595_1419 265
147 3300053153 Ga0500616_0018799 Ga0500616_0018799_1375_2196 265
148 3300053140 Ga0500573_0132696 Ga0500573_0132696_144_992 266
149 3300009553 Ga0105249_10006085 Ga0105249_100060858 267
150 3300025961 Ga0207712_10002376 Ga0207712_100023763 267
151 3300036401 Ga0373937_0553360 Ga0373937_0553360_222_1043 267
152 3300046516 Ga0495628_0214321 Ga0495628_0214321_13_816 267
153 3300005353 Ga0070669_100116039 Ga0070669_1001160392 268
154 3300005367 Ga0070667_100162072 Ga0070667_1001620722 268
155 3300005841 Ga0068863_100002720 Ga0068863_1000027208 268
156 3300005844 Ga0068862_100055812 Ga0068862_1000558125 268
157 3300009177 Ga0105248_10168845 Ga0105248_101688452 268
158 3300009553 Ga0105249_10145177 Ga0105249_101451772 268
159 3300025923 Ga0207681_10195038 Ga0207681_101950382 268
160 3300026116 Ga0207674_10236799 Ga0207674_102367992 268
161 3300028380 Ga0268265_10139763 Ga0268265_101397631 268
162 3300028381 Ga0268264_10148958 Ga0268264_101489582 268
163 3300013306 Ga0163162_10098186 Ga0163162_100981862 269
164 3300005327 Ga0070658_10027942 Ga0070658_100279423 278
165 3300005328 Ga0070676_10048359 Ga0070676_100483591 278
166 3300035172 Ga0373955_0180185 Ga0373955_0180185_88_924 278
167 3300046477 Ga0495664_0193157 Ga0495664_0193157_344_1180 278
168 3300046543 Ga0495645_0053088 Ga0495645_0053088_682_1584 278

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14748

P5CR_dimer

Pyrroline-5-carboxylate reductase dimerisation

206

311

0.97

PF03807

F420_oxidored

NADP oxidoreductase coenzyme F420-dependent

50

142

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ag8-assembly1.cif.gz_A nadp complex of pyrroline-5-carboxylate reductase from neisseria meningitidis 0.9568 3 264
2ag8-assembly1.cif.gz_A nadp complex of pyrroline-5-carboxylate reductase from neisseria meningitidis 0.9356 3 264
5uaw-assembly1.cif.gz_B structure of apo human pycr-1 crystallized in space group p21212 0.9272 2 264
2rcy-assembly1.cif.gz_E-2 crystal structure of plasmodium falciparum pyrroline carboxylate reductase (mal13p1.284) with nadp bound 0.9272 5 265
2ahr-assembly1.cif.gz_E crystal structures of 1-pyrroline-5-carboxylate reductase from human pathogen streptococcus pyogenes 0.9259 2 262
ID Description Score Start End Superfamily
2izzE02 Mainly Alpha;Orthogonal Bundle;ProC C-terminal domain-like fold;ProC C-terminal domain-like 0.9929 166 263 1.10.3730.10
5uauB02 Mainly Alpha;Orthogonal Bundle;ProC C-terminal domain-like fold;ProC C-terminal domain-like 0.9927 166 263 1.10.3730.10
5uauC02 Mainly Alpha;Orthogonal Bundle;ProC C-terminal domain-like fold;ProC C-terminal domain-like 0.9926 166 263 1.10.3730.10
5bsfB02 Mainly Alpha;Orthogonal Bundle;ProC C-terminal domain-like fold;ProC C-terminal domain-like 0.9924 166 263 1.10.3730.10
5bshB02 Mainly Alpha;Orthogonal Bundle;ProC C-terminal domain-like fold;ProC C-terminal domain-like 0.9923 166 263 1.10.3730.10
ID Description Score Start End GO Terms
AF-J3D365-F1-model_v4 Pyrroline-5-carboxylate reductase (P5C reductase) (P5CR) (EC 1.5.1.2) (PCA reductase) 0.9875 3 264 GO:0004735
GO:0005737
GO:0055129
AF-A0A3B9BAU3-F1-model_v4 Pyrroline-5-carboxylate reductase 0.986 151 263 GO:0004735
GO:0055129
AF-A0A7W0G0D4-F1-model_v4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.9854 65 266 GO:0004735
GO:0005737
GO:0055129
AF-A0A3B9MJV7-F1-model_v4 Pyrroline-5-carboxylate reductase 0.9845 86 264 GO:0004735
GO:0055129
AF-A0A8A5VYR7-F1-model_v4 deleted 0.9838 147 263

Feature Viewer

pLDDT pTM Quality
92.74 0.86 High
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Predicted Structure (AlphaFold2)

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